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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.240252 (20 seq.)
>W1712002218
NEED01000009
Cyanobacteriota
unicellular cyanobacterium SU2 [NEED]
61262
61334
+
Ala
GGC
[ENA]
¡û
>W1712017613
NETF01000135
Cyanobacteriota
unicellular cyanobacterium SU3 [NETF]
55566
55638
+
Ala
GGC
[ENA]
¡û
>w023456
AAXW01000020
Cyanobacteriota
Crocosphaera chwakensis CCY0110 [AAXW]
34986
35061
+
Ala
GGC
[ENA]
¡û
>W08008920
ABLR01000001
Cyanobacteriota
Rippkaea orientalis PCC 8801 [ABLR]
70017
69945
-
Ala
GGC
[ENA]
¡û
>W08011485
ABVI01000001
Cyanobacteriota
Rippkaea orientalis PCC 8802 [ABVI]
485396
485468
+
Ala
GGC
[ENA]
¡û
>W141247130
CAQN01000849
Cyanobacteriota
Crocosphaera watsonii WH 0402 [CAQN]
1300
1373
+
Ala
GGC
[ENA]
¡û
>C08003976
CP000806
Cyanobacteriota
Crocosphaera subtropica ATCC 51142 [CP000806, CP000807]
2395755
2395683
-
Ala
GGC
[Ensembl]
¡û
>WENV170335954
CESZ01109704
[CESZ] marine metagenome genome assembly TARA_078_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
461
389
-
Ala
GGC
[ENA]
¢þ
>WENV170826959
MDSY01120108
[MDSY] marine metagenome; seawater
47885
47813
-
Ala
GGC
[ENA]
¢þ
>WENV171002951
NJIW01003143
[NJIW] biofilm metagenome; Green berry consortia from Sippewissett Salt Marsh
159
231
+
Ala
GGC
[ENA]
¢þ
>C181001760
AP017375
Cyanobacteriota
Stanieria sp. NIES-3757 [AP017375]
3113824
3113896
+
Ala
GGC
-
¡û
>C191001452
AP018341
Cyanobacteriota
cyanobacterium endosymbiont of Rhopalodia gibberula [AP018341]
537123
537195
+
Ala
GGC
-
¡û
>W1910018071
BDQK01000013
Cyanobacteriota
Aphanothece sacrum FPU1 [BDQK]
450376
450304
-
Ala
GGC
[ENA]
¡û
>W1910018108
BDQL01000027
Cyanobacteriota
Aphanothece sacrum FPU3 [BDQL]
42704
42632
-
Ala
GGC
[ENA]
¡û
>C09103629
CP001287
Cyanobacteriota
Rippkaea orientalis PCC 8801 [CP001287]
3921695
3921623
-
Ala
GGC
[Ensembl]
¡û
>W1810271978
PRLH01000183
Cyanobacteriota
Cyanothece sp. BG0011 [PRLH]
83809
83737
-
Ala
GGC
[ENA]
¡û
>C151000941
AP012549
Cyanobacteriota
cyanobacterium endosymbiont of Epithemia turgida isolate EtSB Lake [AP012549]
590742
590814
+
Ala
GGC
[Ensembl]
¡û
>C10104724
CP001701
Cyanobacteriota
Rippkaea orientalis [CP001701]
3899850
3899778
-
Ala
GGC
[Ensembl]
¡û
>W11181452
AGJC01000003
Cyanobacteriota
Crocosphaera subtropica ATCC 51472 [AGJC]
489888
489960
+
Ala
GGC
[ENA]
¡û
>C131004438
CP003592
Cyanobacteriota
Pseudanabaena sp. PCC 7367 [CP003592]
4413810
4413736
-
Ala
GGC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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