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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.240404 (121 seq.)
>W1711705074
MSQD01000001
Bacillota
Thermoanaerobacterium sp. PSU-2 [MSQD]
236347
236272
-
Val
TAC
[ENA]
¡û
>W1711705089
MSQD01000001
Bacillota
Thermoanaerobacterium sp. PSU-2 [MSQD]
6383
6310
-
Val
TAC
[ENA]
¡û
>W131051981
AMYG01000043
Bacillota
Thermoanaerobacter thermohydrosulfuricus WC1 [AMYG]
39655
39580
-
Val
TAC
[ENA]
¡û
>W131051993
AMYG01000052
Bacillota
Thermoanaerobacter thermohydrosulfuricus WC1 [AMYG]
217
142
-
Val
TAC
[ENA]
¡û
>W131167545
ARDJ01000005
Bacillota
Thermoanaerobacter indiensis BSB-33 [ARDJ]
51668
51743
+
Val
TAC
[ENA]
¡û
>W131167565
ARDJ01000017
Bacillota
Thermoanaerobacter indiensis BSB-33 [ARDJ]
89308
89233
-
Val
TAC
[ENA]
¡û
>C025824
AE008691
Bacillota
Caldanaerobacter subterraneus subsp. tengcongensis MB4 [AE008691]
499335
499410
+
Val
TAC
[Ensembl]
¡û
>C025855
AE008691
Bacillota
Caldanaerobacter subterraneus subsp. tengcongensis MB4 [AE008691]
1683009
1682934
-
Val
TAC
[Ensembl]
¡û
>WENV180346171
OBLN01034121
[OBLN] sediment metagenome; sediment
502
577
+
Val
TAC
[ENA]
¢þ
>WENV181226134
OFDK01000081
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
27912
27837
-
Val
TAC
[ENA]
¢þ
>WENV181226196
OFDK01000195
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
9261
9186
-
Val
TAC
[ENA]
¢þ
>W141153103
AXDC01000002
Bacillota
Caldanaerobacter subterraneus subsp. yonseiensis KB-1 [AXDC]
147474
147549
+
Val
TAC
[ENA]
¡û
>W141153109
AXDC01000002
Bacillota
Caldanaerobacter subterraneus subsp. yonseiensis KB-1 [AXDC]
153862
153787
-
Val
TAC
[ENA]
¡û
>W08006043
ABIL02000005
Bacillota
Anaerofustis stercorihominis DSM 17244 [ABIL]
463054
463129
+
Val
TAC
[ENA]
¡û
>W08006060
ABIL02000006
Bacillota
Anaerofustis stercorihominis DSM 17244 [ABIL]
1209624
1209552
-
Val
TAC
[ENA]
¡û
>W141193973
AYSN01000058
Bacillota
Thermoanaerobacterium aotearoense SCUT27 [AYSN]
41560
41485
-
Val
TAC
[ENA]
¡û
>W141193993
AYSN01000062
Bacillota
Thermoanaerobacterium aotearoense SCUT27 [AYSN]
3714
3639
-
Val
TAC
[ENA]
¡û
>W141238339
BBKT01000020
Bacillota
Thermoanaerobacterium saccharolyticum [BBKT]
16251
16176
-
Val
TAC
[ENA]
¡û
>W141238346
BBKT01000032
Bacillota
Thermoanaerobacterium saccharolyticum [BBKT]
81885
81810
-
Val
TAC
[ENA]
¡û
>C08010933
CP000923
Bacillota
Thermoanaerobacter sp. X514 [CP000923]
458329
458404
+
Val
TAC
[Ensembl]
¡û
>C08010970
CP000923
Bacillota
Thermoanaerobacter sp. X514 [CP000923]
2075914
2075842
-
Val
TAC
[Ensembl]
¡û
>C08011064
CP000924
Bacillota
Thermoanaerobacter pseudethanolicus ATCC 33223 ATCC 33223; 39E [CP000924]
1834167
1834095
-
Val
TAC
[Ensembl]
¡û
>W141276459
JADV01000002
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [JADV]
14696
14771
+
Val
TAC
[ENA]
¡û
>W141276480
JADV01000008
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [JADV]
61916
61841
-
Val
TAC
[ENA]
¡û
>WENV170675638
LDZP01000171
[LDZP] terrestrial metagenome; oil reservoir sample I1
58505
58580
+
Val
TAC
[ENA]
¢þ
>WENV170676252
LDZR01001872
[LDZR] terrestrial metagenome; oil reservoir sample K2
10399
10474
+
Val
TAC
[ENA]
¢þ
>WENV170676261
LDZR01001901
[LDZR] terrestrial metagenome; oil reservoir sample K2
1210
1135
-
Val
TAC
[ENA]
¢þ
>WENV170676884
LDZS01003001
[LDZS] terrestrial metagenome; oil reservoir sample K3
4018
3943
-
Val
TAC
[ENA]
¢þ
>WENV170779326
LZQN01000670
[LZQN] oil field metagenome; sample BH-FW-7 from oil reservoir
2107
2032
-
Val
TAC
[ENA]
¢þ
>WENV170784172
MCHG01000083
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
13613
13538
-
Val
TAC
[ENA]
¢þ
>WENV170784198
MCHG01000113
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
12264
12189
-
Val
TAC
[ENA]
¢þ
>W09112128
ABXP01000025
Bacillota
Caldanaerobacter subterraneus DSM 12653 [ABXP]
7161
7236
+
Val
TAC
[ENA]
¡û
>WENV170967398
MTKW01001223
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
13880
13805
-
Val
TAC
[ENA]
¢þ
>WENV170967570
MTKW01002135
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
12185
12110
-
Val
TAC
[ENA]
¢þ
>WENV170968161
MTKW01006844
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
44320
44395
+
Val
TAC
[ENA]
¢þ
>WENV170968498
MTKW01010239
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
6629
6554
-
Val
TAC
[ENA]
¢þ
>W09133524
ACPF01000019
Bacillota
Thermoanaerobacter sp. X513 [ACPF]
30880
30805
-
Val
TAC
[ENA]
¡û
>W09133547
ACPF01000041
Bacillota
Thermoanaerobacter sp. X513 [ACPF]
21200
21125
-
Val
TAC
[ENA]
¡û
>W09134131
ACQZ01000012
Bacillota
Thermoanaerobacter brockii subsp. finnii Ako-1 [ACQZ]
47793
47868
+
Val
TAC
[ENA]
¡û
>W09134982
ACVG01000003
Bacillota
Thermoanaerobacterium thermosaccharolyticum DSM 571 [ACVG]
63586
63661
+
Val
TAC
[ENA]
¡û
>W09135024
ACVG01000077
Bacillota
Thermoanaerobacterium thermosaccharolyticum DSM 571 [ACVG]
3004
3079
+
Val
TAC
[ENA]
¡û
>W09135029
ACVH01000001
Bacillota
Thermoanaerobacter italicus Ab9 [ACVH]
72598
72523
-
Val
TAC
[ENA]
¡û
>W09135033
ACVH01000002
Bacillota
Thermoanaerobacter italicus Ab9 [ACVH]
12213
12288
+
Val
TAC
[ENA]
¡û
>W09135140
ACVK01000003
Bacillota
Thermoanaerobacter mathranii subsp. mathranii str. A3 [ACVK]
22710
22785
+
Val
TAC
[ENA]
¡û
>W09135181
ACVK01000044
Bacillota
Thermoanaerobacter mathranii subsp. mathranii str. A3 [ACVK]
9061
8986
-
Val
TAC
[ENA]
¡û
>W09135847
ACXP01000008
Bacillota
Thermoanaerobacter sp. X561 [ACXP]
16805
16730
-
Val
TAC
[ENA]
¡û
>W09135858
ACXP01000016
Bacillota
Thermoanaerobacter sp. X561 [ACXP]
37781
37706
-
Val
TAC
[ENA]
¡û
>C181021920
CP016893
Bacillota
Thermoanaerobacterium thermosaccharolyticum TG57 [CP016893]
600494
600419
-
Val
TAC
-
¡û
>C181021935
CP016893
Bacillota
Thermoanaerobacterium thermosaccharolyticum TG57 [CP016893]
341155
341080
-
Val
TAC
-
¡û
>C191108099
CP033580
Bacillota
Thermoanaerobacter ethanolicus JW 200 [CP033580]
1019284
1019359
+
Val
TAC
-
¡û
>C191108134
CP033580
Bacillota
Thermoanaerobacter ethanolicus JW 200 [CP033580]
2215010
2214935
-
Val
TAC
-
¡û
>W1910747719
MINB01000020
Bacillota
Thermoanaerobacterium thermosaccharolyticum GSU5 [MINB]
6773
6698
-
Val
TAC
[ENA]
¡û
>W1910747737
MINB01000040
Bacillota
Thermoanaerobacterium thermosaccharolyticum GSU5 [MINB]
8944
9019
+
Val
TAC
[ENA]
¡û
>W1910976717
NKHD01000023
Bacillota
Thermoanaerobacterium thermosaccharolyticum M5 [NKHD]
3908
3833
-
Val
TAC
[ENA]
¡û
>W1910976749
NKHD01000056
Bacillota
Thermoanaerobacterium thermosaccharolyticum M5 [NKHD]
8033
8108
+
Val
TAC
[ENA]
¡û
>W1810721068
QNRS01000001
Bacillota
Garciella nitratireducens GHB3 [QNRS]
205703
205628
-
Val
TAC
[ENA]
¡û
>W1810721087
QNRS01000006
Bacillota
Garciella nitratireducens GHB3 [QNRS]
97673
97598
-
Val
TAC
[ENA]
¡û
>W1810721128
QNRS01000040
Bacillota
Garciella nitratireducens GHB3 [QNRS]
5160
5235
+
Val
TAC
[ENA]
¡û
>W1810721341
QNRX01000004
Bacillota
Alkalibaculum bacchi DSM 22112 [QNRX]
183338
183413
+
Val
TAC
[ENA]
¡û
>W1810721342
QNRX01000004
Bacillota
Alkalibaculum bacchi DSM 22112 [QNRX]
183526
183601
+
Val
TAC
[ENA]
¡û
>W1810721347
QNRX01000008
Bacillota
Alkalibaculum bacchi DSM 22112 [QNRX]
58035
58110
+
Val
TAC
[ENA]
¡û
>W1810889478
QUSM01000003
Bacillota
Anaerofustis stercorihominis AM25-6 [QUSM]
260280
260205
-
Val
TAC
[ENA]
¡û
>W1810889493
QUSM01000006
Bacillota
Anaerofustis stercorihominis AM25-6 [QUSM]
72053
71978
-
Val
TAC
[ENA]
¡û
>C151045287
CP009170
Bacillota
Thermoanaerobacter kivui DSM 2030; LKT-1 [CP009170]
466307
466382
+
Val
TAC
[Ensembl]
¡û
>C151045327
CP009170
Bacillota
Thermoanaerobacter kivui DSM 2030; LKT-1 [CP009170]
1534231
1534156
-
Val
TAC
[Ensembl]
¡û
>W10105912
ACXY01000003
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
92257
92182
-
Val
TAC
[ENA]
¡û
>W10105920
ACXY01000007
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
30474
30549
+
Val
TAC
[ENA]
¡û
>W10120475
ADXD01000008
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
12177
12102
-
Val
TAC
[ENA]
¡û
>W10120484
ADXD01000021
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
30128
30203
+
Val
TAC
[ENA]
¡û
>C10113373
CP001936
Bacillota
Thermoanaerobacter italicus Ab9 [CP001936]
507398
507473
+
Val
TAC
[Ensembl]
¡û
>C10113409
CP001936
Bacillota
Thermoanaerobacter italicus Ab9 [CP001936]
1544540
1544465
-
Val
TAC
[Ensembl]
¡û
>C10113427
CP002032
Bacillota
Thermoanaerobacter mathranii subsp. mathranii str. A3 [CP002032]
584082
584157
+
Val
TAC
[Ensembl]
¡û
>C10113466
CP002032
Bacillota
Thermoanaerobacter mathranii subsp. mathranii str. A3 [CP002032]
1526246
1526171
-
Val
TAC
[Ensembl]
¡û
>C10113835
CP002171
Bacillota
Thermoanaerobacterium thermosaccharolyticum DSM 571 [CP002171]
2204066
2203991
-
Val
TAC
[Ensembl]
¡û
>C10113850
CP002171
Bacillota
Thermoanaerobacterium thermosaccharolyticum DSM 571 [CP002171]
1988121
1988046
-
Val
TAC
[Ensembl]
¡û
>W11108235
ACXY01000003
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
92257
92182
-
Val
TAC
[ENA]
¡û
>W11108243
ACXY01000007
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
30474
30549
+
Val
TAC
[ENA]
¡û
>W1511275090
JOOI01000001
Bacillota
Thermoanaerobacter sp. YS13 [JOOI]
925797
925722
-
Val
TAC
[ENA]
¡û
>C11122491
CP002466
Bacillota
Thermoanaerobacter brockii subsp. finnii Ako-1 [CP002466]
1826380
1826305
-
Val
TAC
[Ensembl]
¡û
>C11122693
CP002210
Bacillota
Thermoanaerobacter sp. X513 [CP002210]
498184
498259
+
Val
TAC
[Ensembl]
¡û
>C11122709
CP002210
Bacillota
Thermoanaerobacter sp. X513 [CP002210]
878430
878505
+
Val
TAC
[Ensembl]
¡û
>C11123224
CP002991
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [CP002991]
576949
577024
+
Val
TAC
[Ensembl]
¡û
>C11123263
CP002991
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [CP002991]
1665469
1665394
-
Val
TAC
[Ensembl]
¡û
>C11123308
CP002739
Bacillota
Thermoanaerobacterium xylanolyticum LX-11 [CP002739]
890435
890508
+
Val
TAC
[Ensembl]
¡û
>C11123322
CP002739
Bacillota
Thermoanaerobacterium xylanolyticum LX-11 [CP002739]
1974263
1974188
-
Val
TAC
[Ensembl]
¡û
>W11127084
ADXD01000008
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
12177
12102
-
Val
TAC
[ENA]
¡û
>W11127093
ADXD01000021
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
30128
30203
+
Val
TAC
[ENA]
¡û
>W11150425
AEVQ01000002
Bacillota
Thermoanaerobacterium xylanolyticum LX-11 [AEVQ]
225635
225562
-
Val
TAC
[ENA]
¡û
>W11150444
AEVQ01000007
Bacillota
Thermoanaerobacterium xylanolyticum LX-11 [AEVQ]
3788
3713
-
Val
TAC
[ENA]
¡û
>W11152637
AEYS01000003
Bacillota
Thermoanaerobacter ethanolicus JW 200 [AEYS]
41279
41354
+
Val
TAC
[ENA]
¡û
>W11152659
AEYS01000013
Bacillota
Thermoanaerobacter ethanolicus JW 200 [AEYS]
23044
22969
-
Val
TAC
[ENA]
¡û
>W11152695
AEYS01000251
Bacillota
Thermoanaerobacter ethanolicus JW 200 [AEYS]
358
433
+
Val
TAC
[ENA]
¡û
>C121007643
CP003184
Bacillota
Thermoanaerobacterium saccharolyticum JW/SL-YS485 [CP003184]
2510106
2510031
-
Val
TAC
[Ensembl]
¡û
>C121007660
CP003184
Bacillota
Thermoanaerobacterium saccharolyticum JW/SL-YS485 [CP003184]
3834
3759
-
Val
TAC
[Ensembl]
¡û
>W1610043643
BAZY01000003
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [BAZY]
98426
98351
-
Val
TAC
[ENA]
¡û
>W1610043664
BAZY01000021
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [BAZY]
6083
6158
+
Val
TAC
[ENA]
¡û
>W121068074
AJUD01000002
Bacillota
Thermoanaerobacter siderophilus SR4 [AJUD]
25165
25090
-
Val
TAC
[ENA]
¡û
>W121068105
AJUD01000009
Bacillota
Thermoanaerobacter siderophilus SR4 [AJUD]
74451
74526
+
Val
TAC
[ENA]
¡û
>C131001923
CP003066
Bacillota
Thermoanaerobacterium thermosaccharolyticum M0795 [CP003066]
2242780
2242705
-
Val
TAC
[Ensembl]
¡û
>C131001938
CP003066
Bacillota
Thermoanaerobacterium thermosaccharolyticum M0795 [CP003066]
1968268
1968193
-
Val
TAC
[Ensembl]
¡û
>W1610612270
LGEO01000008
Bacillota
Thermoanaerobacter thermocopriae [LGEO]
58505
58580
+
Val
TAC
[ENA]
¡û
>W1610612654
LGEY01000064
Bacillota
Caldanaerobacter subterraneus [LGEY]
10399
10474
+
Val
TAC
[ENA]
¡û
>W1610612663
LGEY01000093
Bacillota
Caldanaerobacter subterraneus [LGEY]
1210
1135
-
Val
TAC
[ENA]
¡û
>W1610613180
LGFN01000105
Bacillota
Caldanaerobacter subterraneus [LGFN]
4018
3943
-
Val
TAC
[ENA]
¡û
>W1710040803
BAZY01000003
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [BAZY]
98426
98351
-
Val
TAC
[ENA]
¡û
>W1710040824
BAZY01000021
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [BAZY]
6083
6158
+
Val
TAC
[ENA]
¡û
>W1710515334
FNBS01000061
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FNBS]
6273
6198
-
Val
TAC
[ENA]
¡û
>W1710515336
FNBS01000068
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FNBS]
8988
8913
-
Val
TAC
[ENA]
¡û
>W1710560371
FONI01000019
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FONI]
34952
35027
+
Val
TAC
[ENA]
¡û
>W1710560377
FONI01000022
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FONI]
39690
39765
+
Val
TAC
[ENA]
¡û
>W1710582297
FQTU01000010
Bacillota
Alkalibacter saccharofermentans DSM 14828 [FQTU]
42260
42335
+
Val
TAC
[ENA]
¡û
>W1710582307
FQTU01000012
Bacillota
Alkalibacter saccharofermentans DSM 14828 [FQTU]
62702
62777
+
Val
TAC
[ENA]
¡û
>W1710583275
FQUR01000007
Bacillota
Thermoanaerobacter uzonensis DSM 18761 [FQUR]
114168
114243
+
Val
TAC
[ENA]
¡û
>W1710583302
FQUR01000010
Bacillota
Thermoanaerobacter uzonensis DSM 18761 [FQUR]
71842
71917
+
Val
TAC
[ENA]
¡û
>W1710600846
FUWV01000003
Bacillota
Garciella nitratireducens DSM 15102 [FUWV]
135698
135773
+
Val
TAC
[ENA]
¡û
>W1710600847
FUWV01000004
Bacillota
Garciella nitratireducens DSM 15102 [FUWV]
83870
83795
-
Val
TAC
[ENA]
¡û
>W1710600872
FUWV01000016
Bacillota
Garciella nitratireducens DSM 15102 [FUWV]
44707
44782
+
Val
TAC
[ENA]
¡û
>W1710733776
LGEO01000008
Bacillota
Thermoanaerobacter thermocopriae [LGEO]
58505
58580
+
Val
TAC
[ENA]
¡û
>W1710733975
LGEY01000064
Bacillota
Caldanaerobacter subterraneus [LGEY]
10399
10474
+
Val
TAC
[ENA]
¡û
>W1710733984
LGEY01000093
Bacillota
Caldanaerobacter subterraneus [LGEY]
1210
1135
-
Val
TAC
[ENA]
¡û
>W1710734387
LGFN01000105
Bacillota
Caldanaerobacter subterraneus [LGFN]
4018
3943
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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