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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.241233 (27 seq.)
>A171000195
CP000855
Euryarchaeota
Thermococcus onnurineus NA1 [CP000855]
323906
323983
+
Val
GAC
-
¡û
>A171000484
CP001398
Euryarchaeota
Thermococcus gammatolerans EJ3 EJ3; DSM 15229 [CP001398]
1724982
1725059
+
Val
GAC
-
¡û
>A171001891
CP002372
Euryarchaeota
Thermococcus barophilus MP [CP002372]
654905
654828
-
Val
GAC
-
¡û
>A171002284
CP002779
Euryarchaeota
Pyrococcus yayanosii CH1 [CP002779]
228217
228294
+
Val
GAC
-
¡û
>A171002680
CP002952
Euryarchaeota
Thermococcus sp. AM4 [CP002952]
1271701
1271624
-
Val
GAC
-
¡û
>A171003340
CP003651
Euryarchaeota
Thermococcus cleftensis CL1 [CP003651]
315613
315536
-
Val
GAC
-
¡û
>A171003881
CP006670
Euryarchaeota
Thermococcus litoralis DSM 5473 [CP006670]
1988781
1988858
+
Val
GAC
-
¡û
>A171004038
CP006965
Euryarchaeota
Thermococcus paralvinellae ES1 [CP006965]
708906
708983
+
Val
GAC
-
¡û
>A171004207
CP007140
Euryarchaeota
Thermococcus guaymasensis DSM 11113 [CP007140]
410102
410179
+
Val
GAC
-
¡û
>A171004268
CP007264
Euryarchaeota
Thermococcus nautili 30-1 [CP007264]
209843
209920
+
Val
GAC
-
¡û
>A171004454
CP008887
Euryarchaeota
Thermococcus eurythermalis A501 [CP008887]
1250633
1250710
+
Val
GAC
-
¡û
>A171006371
CP012200
Euryarchaeota
Thermococcus sp. 2319x1 [CP012200]
655110
655033
-
Val
GAC
-
¡û
>A171006491
CP013050
Euryarchaeota
Thermococcus barophilus CH5 [CP013050]
788779
788702
-
Val
GAC
-
¡û
>A171006572
CP014750
Euryarchaeota
Thermococcus peptonophilus OG-1 [CP014750]
466919
466996
+
Val
GAC
-
¡û
>A171006657
CP015520
Euryarchaeota
Thermococcus piezophilus CDGS [CP015520]
1419024
1419101
+
Val
GAC
-
¡û
>A171007118
CP021848
Euryarchaeota
Thermococcus sp. 5-4 [CP021848]
424551
424474
-
Val
GAC
-
¡û
>WENV180634693
OCRB01072349
[OCRB] metagenome; diffuse fluid
123
46
-
Val
GAC
[ENA]
¢þ
>At1920
AP006878
Euryarchaeota
Thermococcus kodakarensis KOD1 [AP006878]
424241
424318
+
Val
GAC
[Ensembl]
¡û
>WENV170676200
LDZR01001638
[LDZR] terrestrial metagenome; oil reservoir sample K2
132
209
+
Val
GAC
[ENA]
¢þ
>W1910200340
FJMQ01000151
Euryarchaeota
Thermococcus litoralis [FJMQ]
46790
46867
+
Val
GAC
[ENA]
¡û
>W1910229973
FOIW01000002
Euryarchaeota
Thermococcus thioreducens OGL-20 [FOIW]
301017
301094
+
Val
GAC
[ENA]
¡û
>W1610000721
ABSF01000010
Euryarchaeota
Thermococcus barophilus MP [ABSF]
67729
67652
-
Val
GAC
[ENA]
¡û
>W1610000891
ABXN01000014
Euryarchaeota
Thermococcus sp. AM4 [ABXN]
179791
179868
+
Val
GAC
[ENA]
¡û
>W1610004929
AHVB01000047
Euryarchaeota
Thermococcus litoralis DSM 5473 [AHVB]
141
64
-
Val
GAC
[ENA]
¡û
>W1610005567
AKID01000023
Euryarchaeota
Thermococcus sp. PK [AKID]
22825
22748
-
Val
GAC
[ENA]
¡û
>W1610548889
JXCG01000011
Euryarchaeota
Thermococcus sp. EP1 [JXCG]
41163
41086
-
Val
GAC
[ENA]
¡û
>W1610638222
LIXN01000006
Euryarchaeota
Thermococcus thioreducens DSM 14981 [LIXN]
33844
33921
+
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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