This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.241359 (45 seq.)
>W1711377569
MDZA01000415
Bacteroidota
Hymenobacter coccineus CCM 8649 [MDZA]
55288
55365
+
Val
TAC
[ENA]
¡û
>W1712105566
NIRR01000004
Bacteroidota
Hymenobacter amundsenii CCM 8682 [NIRR]
139281
139206
-
Val
TAC
[ENA]
¡û
>W1712105567
NIRR01000004
Bacteroidota
Hymenobacter amundsenii CCM 8682 [NIRR]
139181
139106
-
Val
TAC
[ENA]
¡û
>W131180739
ARNJ01000040
Bacteroidota
Hymenobacter aerophilus DSM 13606 [ARNJ]
44238
44315
+
Val
TAC
[ENA]
¡û
>W131180740
ARNJ01000040
Bacteroidota
Hymenobacter aerophilus DSM 13606 [ARNJ]
44336
44411
+
Val
TAC
[ENA]
¡û
>W131215994
ATVL01000011
Bacteroidota
Hymenobacter norwichensis DSM 15439 [ATVL]
359895
359818
-
Val
TAC
[ENA]
¡û
>WENV180283570
OBID01000765
[OBID] metagenome; sludge
7808
7733
-
Val
TAC
[ENA]
¢þ
>WENV181189932
OEOF01332850
[OEOF] activated sludge metagenome; Activated Sludge
122
197
+
Val
TAC
[ENA]
¢þ
>WENV170989066
MWVY01078279
[MWVY] soil metagenome; MS7-5 sample; Antarctic (ecotone) soil
155
78
-
Val
TAC
[ENA]
¢þ
>WENV170997161
MWWG01041022
[MWWG] soil metagenome; MG6-4 sample; Antarctic (ecotone) soil
231
308
+
Val
TAC
[ENA]
¢þ
>C191154904
CP037922
Bacteroidota
Hymenobacter radiodurans 17J36-26 [CP037922]
95075
95000
-
Val
TAC
-
¡û
>W1910547411
FZNS01000006
Bacteroidota
Hymenobacter mucosus DSM 28041 [FZNS]
23270
23195
-
Val
TAC
[ENA]
¡û
>W1910547412
FZNS01000006
Bacteroidota
Hymenobacter mucosus DSM 28041 [FZNS]
23171
23094
-
Val
TAC
[ENA]
¡û
>W1910651917
LYMU01000129
Bacteroidota
Hymenobacter sp. UV11 [LYMU]
317831
317756
-
Val
TAC
[ENA]
¡û
>W1911788140
QYCN01000004
Bacteroidota
Hymenobacter rubripertinctus CCM 8852 [QYCN]
317344
317269
-
Val
TAC
[ENA]
¡û
>W1911788141
QYCN01000004
Bacteroidota
Hymenobacter rubripertinctus CCM 8852 [QYCN]
317243
317166
-
Val
TAC
[ENA]
¡û
>W1810089903
PGFA01000004
Bacteroidota
Hymenobacter chitinivorans DSM 11115 [PGFA]
122791
122716
-
Val
TAC
[ENA]
¡û
>W1810089904
PGFA01000004
Bacteroidota
Hymenobacter chitinivorans DSM 11115 [PGFA]
122695
122619
-
Val
TAC
[ENA]
¡û
>W1810678975
QKNS01000005
Bacteroidota
Hymenobacter sediminis ELS1360 [QKNS]
21863
21788
-
Val
TAC
[ENA]
¡û
>W1810678976
QKNS01000005
Bacteroidota
Hymenobacter sediminis ELS1360 [QKNS]
21763
21688
-
Val
TAC
[ENA]
¡û
>W1810912387
QVLT01000018
Bacteroidota
Hymenobacter sp. CCM 8763 [QVLT]
37195
37272
+
Val
TAC
[ENA]
¡û
>W1810912388
QVLT01000018
Bacteroidota
Hymenobacter sp. CCM 8763 [QVLT]
37295
37370
+
Val
TAC
[ENA]
¡û
>SRA1015760
SRR023846.185211
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
172
249
+
Val
TAC
[SRA]
>SRA1016039
SRR023846.320070
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
171
248
+
Val
TAC
[SRA]
>SRA1016254
SRR023846.420590
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
239
164
-
Val
TAC
[SRA]
>C151009404
CP006587
Bacteroidota
Hymenobacter sp. APR13 [CP006587]
1816585
1816660
+
Val
TAC
[Ensembl]
¡û
>C151009405
CP006587
Bacteroidota
Hymenobacter sp. APR13 [CP006587]
1816687
1816762
+
Val
TAC
[Ensembl]
¡û
>C151017365
CP007145
Bacteroidota
Hymenobacter swuensis DY53 [CP007145]
4671537
4671612
+
Val
TAC
[Ensembl]
¡û
>C151017366
CP007145
Bacteroidota
Hymenobacter swuensis DY53 [CP007145]
4671643
4671720
+
Val
TAC
[Ensembl]
¡û
>C151064014
CP010054
Bacteroidota
Hymenobacter sp. DG25B [CP010054]
541140
541063
-
Val
TAC
[Ensembl]
¡û
>C151096207
CP012623
Bacteroidota
Hymenobacter sp. DG25A [CP012623]
3210929
3211006
+
Val
TAC
-
¡û
>W1511543301
JZIR01000006
Bacteroidota
Hymenobacter sp. AT01-02 [JZIR]
15371
15296
-
Val
TAC
[ENA]
¡û
>W1511543302
JZIR01000006
Bacteroidota
Hymenobacter sp. AT01-02 [JZIR]
15272
15195
-
Val
TAC
[ENA]
¡û
>C161070727
CP014304
Bacteroidota
Hymenobacter sp. PAMC 26628 [CP014304]
4734834
4734759
-
Val
TAC
[Ensembl]
¡û
>C161077103
CP014771
Bacteroidota
Hymenobacter sp. PAMC 26554 [CP014771]
2780418
2780493
+
Val
TAC
[Ensembl]
¡û
>W1710530564
FNOV01000007
Bacteroidota
Hymenobacter psychrophilus [FNOV]
51448
51525
+
Val
TAC
[ENA]
¡û
>W1710530565
FNOV01000007
Bacteroidota
Hymenobacter psychrophilus [FNOV]
51547
51624
+
Val
TAC
[ENA]
¡û
>W1710553552
FOHS01000001
Bacteroidota
Hymenobacter actinosclerus [FOHS]
41421
41498
+
Val
TAC
[ENA]
¡û
>W1710553553
FOHS01000001
Bacteroidota
Hymenobacter actinosclerus [FOHS]
41522
41597
+
Val
TAC
[ENA]
¡û
>W1710587479
FQYN01000006
Bacteroidota
Hymenobacter daecheongensis DSM 21074 [FQYN]
2942
2865
-
Val
TAC
[ENA]
¡û
>W1710590090
FRAS01000001
Bacteroidota
Hymenobacter psychrotolerans DSM 18569 [FRAS]
468107
468182
+
Val
TAC
[ENA]
¡û
>W1710590091
FRAS01000001
Bacteroidota
Hymenobacter psychrotolerans DSM 18569 [FRAS]
468206
468283
+
Val
TAC
[ENA]
¡û
>W1710605397
FWWW01000034
Bacteroidota
Hymenobacter roseosalivarius DSM 11622 [FWWW]
27167
27244
+
Val
TAC
[ENA]
¡û
>W1710610182
FYEW01000003
Bacteroidota
Hymenobacter gelipurpurascens [FYEW]
30828
30753
-
Val
TAC
[ENA]
¡û
>W1710610183
FYEW01000003
Bacteroidota
Hymenobacter gelipurpurascens [FYEW]
30731
30654
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK