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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.241478 (71 seq.)
>W1710791212
LJNL01000291
Gammaproteobacteria
Gammaproteobacteria bacterium SG8_15 [LJNL]
3096
3021
-
Thr
TGT
[ENA]
¡û
>W131249929
CAUE01000043
Gammaproteobacteria
Coxiella burnetii Z3055 [CAUE]
5256
5331
+
Thr
TGT
[ENA]
¡û
>W131251097
CAVF010000003
Gammaproteobacteria
Coxiella burnetii Cb175_Guyana [CAVF]
155203
155278
+
Thr
TGT
[ENA]
¡û
>C171071258
CP018005
Gammaproteobacteria
Coxiella burnetii RSA439 [CP018005]
192930
193005
+
Thr
TGT
-
¡û
>C171073861
CP018150
Gammaproteobacteria
Coxiella burnetii 'MSU Goat Q177' [CP018150]
364513
364588
+
Thr
TGT
-
¡û
>C171110888
CP020616
Gammaproteobacteria
Coxiella burnetii RSA 439 [CP020616]
192928
193003
+
Thr
TGT
-
¡û
>C171127835
HG825990
Gammaproteobacteria
Coxiella burnetii Cb175_Guyana [HG825990]
192946
193021
+
Thr
TGT
-
¡û
>C005206
AE016828
Gammaproteobacteria
Coxiella burnetii RSA 493 [AE016828]
192923
192998
+
Thr
TGT
[Ensembl]
¡û
>w024151
AAYJ01000007
Gammaproteobacteria
Coxiella burnetii RSA 334 [AAYJ]
22422
22497
+
Thr
TGT
[ENA]
¡û
>w020078
AAUP01000016
Gammaproteobacteria
Coxiella burnetii 'MSU Goat Q177' [AAUP]
19602
19530
-
Thr
TGT
[ENA]
¡û
>w016761
AAQO01000012
Gammaproteobacteria
Coxiella burnetii RSA 331 [AAQO]
22119
22047
-
Thr
TGT
[ENA]
¡û
>w016637
AAQI01000008
Gammaproteobacteria
Coxiella burnetii Dugway 7E9-12 [AAQI] Dugway 7E9-12 [AAQI]
24141
24216
+
Thr
TGT
[ENA]
¡û
>WENV180094135
MPMF02367881
[MPMF] marine metagenome; 120 m water sample prefiltered with 30 um filter, filtered on to 0.2 um supor filter
20010
20082
+
Thr
TGT
[ENA]
¢þ
>W141027227
AKYP01000024
Gammaproteobacteria
Coxiella burnetii cb109 [AKYP]
264
189
-
Thr
TGT
[ENA]
¡û
>WENV180296499
OBJA01000674
[OBJA] soil metagenome; sediment, water from around vicinity
444
519
+
Thr
TGT
[ENA]
¢þ
>WENV181413775
OGCK01134277
[OGCK] hot springs metagenome; hot spring sediment
543
468
-
Thr
TGT
[ENA]
¢þ
>C08003015
CP000733
Gammaproteobacteria
Coxiella burnetii Dugway 5J108-111 [CP000733]
1867370
1867295
-
Thr
TGT
[Ensembl]
¡û
>C08003037
CP000890
Gammaproteobacteria
Coxiella burnetii RSA 331 [CP000890]
266862
266937
+
Thr
TGT
[Ensembl]
¡û
>W141254752
CBTH010000001
Gammaproteobacteria
Coxiella burnetii Cb185 [CBTH]
192997
193072
+
Thr
TGT
[ENA]
¡û
>W141260643
CCAH010000002
Gammaproteobacteria
Coxiella burnetii [CCAH]
156423
156498
+
Thr
TGT
[ENA]
¡û
>W141260685
CCAI010000002
Gammaproteobacteria
Coxiella burnetii [CCAI]
156423
156498
+
Thr
TGT
[ENA]
¡û
>W141260729
CCAJ010000004
Gammaproteobacteria
Coxiella burnetii [CCAJ]
47566
47641
+
Thr
TGT
[ENA]
¡û
>W141260771
CCAK010000032
Gammaproteobacteria
Coxiella burnetii [CCAK]
19743
19818
+
Thr
TGT
[ENA]
¡û
>W141260820
CCAL010000002
Gammaproteobacteria
Coxiella burnetii [CCAL]
156219
156294
+
Thr
TGT
[ENA]
¡û
>W141260864
CCAM010000006
Gammaproteobacteria
Coxiella burnetii [CCAM]
5495
5570
+
Thr
TGT
[ENA]
¡û
>W141267632
CCNR01000063
Gammaproteobacteria
Coxiella burnetii RSA 493 [CCNR]
9939
9864
-
Thr
TGT
[ENA]
¡û
>WENV183700268
OZSS01150263
[OZSS] metagenome; Seawater sample
149
74
-
Thr
TGT
[ENA]
¢þ
>WENV170332172
CESW01138146
[CESW] marine metagenome genome assembly TARA_096_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
5382
5307
-
Thr
TGT
[ENA]
¢þ
>WENV170655221
JTFN01012554
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
292
367
+
Thr
TGT
[ENA]
¢þ
>WENV170924828
MDTG01072501
[MDTG] marine metagenome; seawater
2393
2468
+
Thr
TGT
[ENA]
¢þ
>C191091564
CP032542
Gammaproteobacteria
Coxiella burnetii 2014-PE-15890 [CP032542]
65722
65650
-
Thr
TGT
-
¡û
>C191134909
CP035112
Gammaproteobacteria
Coxiella burnetii nine mile phase II [CP035112]
466960
467032
+
Thr
TGT
-
¡û
>C191174645
CP040059
Gammaproteobacteria
Coxiella burnetii RSA439 [CP040059]
192791
192863
+
Thr
TGT
-
¡û
>W141810519
JPVV01000013
Gammaproteobacteria
Coxiella burnetii [JPVV]
39065
39140
+
Thr
TGT
[ENA]
¡û
>W1910208694
FLUY01000075
Gammaproteobacteria
Candidatus Thiosymbion oneisti ectosymbiont of Laxus oneistus [FLUY]
6911
6836
-
Thr
TGT
[ENA]
¡û
>W1910208739
FLUZ01000030
Gammaproteobacteria
Candidatus Thiosymbion oneisti ectosymbiont of Laxus oneistus [FLUZ]
15389
15314
-
Thr
TGT
[ENA]
¡û
>C09102989
CP001019
Gammaproteobacteria
Coxiella burnetii CbuG_Q212 [CP001019]
1730519
1730444
-
Thr
TGT
[Ensembl]
¡û
>C09103013
CP001020
Gammaproteobacteria
Coxiella burnetii CbuK_Q154 [CP001020]
364516
364591
+
Thr
TGT
[Ensembl]
¡û
>W1911118977
NOLM01000022
Gammaproteobacteria
Coxiella burnetii Dugway 7E65-68 [NOLM]
70241
70169
-
Thr
TGT
[ENA]
¡û
>W1911119019
NOLN01000021
Gammaproteobacteria
Coxiella burnetii Dugway 7D77-80 [NOLN]
69900
69828
-
Thr
TGT
[ENA]
¡û
>W1911119027
NOLO01000002
Gammaproteobacteria
Coxiella burnetii Turkey RSA315 [NOLO]
155066
155138
+
Thr
TGT
[ENA]
¡û
>W1911119103
NOLP01000035
Gammaproteobacteria
Coxiella burnetii Ko Q229 [NOLP]
153426
153354
-
Thr
TGT
[ENA]
¡û
>W1911119111
NOLQ01000002
Gammaproteobacteria
Coxiella burnetii Dyer RSA345 [NOLQ]
155066
155138
+
Thr
TGT
[ENA]
¡û
>W1911119153
NOLR01000002
Gammaproteobacteria
Coxiella burnetii Idaho Goat Q195 [NOLR]
157147
157219
+
Thr
TGT
[ENA]
¡û
>W1911119195
NOLS01000002
Gammaproteobacteria
Coxiella burnetii Ohio 314 RSA338 [NOLS]
155064
155136
+
Thr
TGT
[ENA]
¡û
>W1911119237
NOLT01000002
Gammaproteobacteria
Coxiella burnetii Ohio 314 RSA270 [NOLT]
155064
155136
+
Thr
TGT
[ENA]
¡û
>W1911119279
NOLU01000002
Gammaproteobacteria
Coxiella burnetii California 16 RSA350 [NOLU]
155064
155136
+
Thr
TGT
[ENA]
¡û
>W1911119321
NOLV01000002
Gammaproteobacteria
Coxiella burnetii California 33 RSA329 [NOLV]
155064
155136
+
Thr
TGT
[ENA]
¡û
>W1911136620
NOVF01000002
Gammaproteobacteria
Coxiella burnetii California 16 RSA350 clone 2 [NOVF]
155064
155136
+
Thr
TGT
[ENA]
¡û
>W1911136662
NOVG01000002
Gammaproteobacteria
Coxiella burnetii Nine Mile RSA514 [NOVG]
154994
155066
+
Thr
TGT
[ENA]
¡û
>W1911136704
NOVH01000002
Gammaproteobacteria
Coxiella burnetii Nine Mile RSA363 [NOVH]
155066
155138
+
Thr
TGT
[ENA]
¡û
>W1911136746
NOVI01000003
Gammaproteobacteria
Coxiella burnetii M44 RSA461 [NOVI]
131268
131340
+
Thr
TGT
[ENA]
¡û
>W1911136788
NOVJ01000002
Gammaproteobacteria
Coxiella burnetii Australia RSA425 [NOVJ]
155066
155138
+
Thr
TGT
[ENA]
¡û
>W1911136830
NOVK01000002
Gammaproteobacteria
Coxiella burnetii Australia RSA297 [NOVK]
155066
155138
+
Thr
TGT
[ENA]
¡û
>W1810059846
PDLP01000011
Gammaproteobacteria
Coxiella burnetii Leningrad-2 [PDLP]
39803
39875
+
Thr
TGT
[ENA]
¡û
>W1810235678
PPFM01000003
Gammaproteobacteria
Coxiella burnetii Q559 [PPFM]
140391
140463
+
Thr
TGT
[ENA]
¡û
>W1810235719
PPFN01000003
Gammaproteobacteria
Coxiella burnetii Q556 [PPFN]
140377
140449
+
Thr
TGT
[ENA]
¡û
>W1810235762
PPFO01000003
Gammaproteobacteria
Coxiella burnetii Q545 [PPFO]
156396
156468
+
Thr
TGT
[ENA]
¡û
>W1810235821
PPFP01000063
Gammaproteobacteria
Coxiella burnetii Q540 [PPFP]
5417
5489
+
Thr
TGT
[ENA]
¡û
>W1810235846
PPFQ01000003
Gammaproteobacteria
Coxiella burnetii Q532 [PPFQ]
156404
156476
+
Thr
TGT
[ENA]
¡û
>W1810235891
PPFR01000008
Gammaproteobacteria
Coxiella burnetii Cb3506 [PPFR]
13442
13370
-
Thr
TGT
[ENA]
¡û
>C151102360
LK937696
Gammaproteobacteria
Coxiella burnetii Z3055 [LK937696]
192961
193036
+
Thr
TGT
-
¡û
>W1510060732
CCXO01000001
Gammaproteobacteria
Coxiella burnetii CbuK_Q154 Cb196_Saudi_Arabia [CCXO]
342590
342665
+
Thr
TGT
[ENA]
¡û
>W1510061152
CCYB01000063
Gammaproteobacteria
Coxiella burnetii RSA 493 [CCYB]
9939
9864
-
Thr
TGT
[ENA]
¡û
>W1510064612
CDBG01000001
Gammaproteobacteria
Coxiella burnetii RSA 493 Cb171_QLYMPHOMA [CDBG]
204888
204963
+
Thr
TGT
[ENA]
¡û
>W1511555102
JZWL01000001
Gammaproteobacteria
Coxiella burnetii NL-Limburg [JZWL]
226510
226585
+
Thr
TGT
[ENA]
¡û
>C161017333
CP007555
Gammaproteobacteria
Coxiella burnetii str. Namibia [CP007555]
363551
363626
+
Thr
TGT
[Ensembl]
¡û
>C161059070
CP013667
Gammaproteobacteria
Coxiella burnetii 3262 [CP013667]
65717
65642
-
Thr
TGT
-
¡û
>C161071935
CP014354
Gammaproteobacteria
Coxiella burnetii 3345937 [CP014354]
55471
55396
-
Thr
TGT
-
¡û
>W1610655137
LJNL01000291
Gammaproteobacteria
Gammaproteobacteria bacterium SG8_15 [LJNL]
3096
3021
-
Thr
TGT
[ENA]
¡û
>WENV079149
AASZ01001876
Olavius algarvensis microbiome from Mediterranean sea
283
208
-
Thr
TGT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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