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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.241561 (63 seq.)
>W1711503750
MKTW01000018
Bacteroidota
Sphingobacteriales bacterium 44-61 [MKTW]
178164
178238
+
Asn
GTT
[ENA]
¡û
>WENV180099398
NMRC01001636
[NMRC] plant metagenome; fluid collected inside the plant's pitcher
75
1
-
Asn
GTT
[ENA]
¡û
>WENV180210245
OBAL01170607
[OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER
89
11
-
Asn
GTT
[ENA]
¡û
>WENV180283979
OBID01008602
[OBID] metagenome; sludge
634
560
-
Asn
GTT
[ENA]
¡û
>WENV180296214
OBJA01000081
[OBJA] soil metagenome; sediment, water from around vicinity
27845
27769
-
Asn
GTT
[ENA]
¡û
>WENV181307832
OFIS01000001
[OFIS] sludge metagenome; sludge
687664
687590
-
Asn
GTT
[ENA]
¡û
>WENV181401817
OFTX01008437
[OFTX] sludge metagenome; sludge
1008
1082
+
Asn
GTT
[ENA]
¡û
>WENV181845407
OGVX01002280
[OGVX] freshwater metagenome; freshwater
515
441
-
Asn
GTT
[ENA]
¡û
>WENV181850157
OGWC01002561
[OGWC] freshwater metagenome; freshwater
1629
1553
-
Asn
GTT
[ENA]
¡û
>WENV183515450
OMKS01064503
[OMKS] sediment metagenome; hot spring sediment
1037
1111
+
Asn
GTT
[ENA]
¡û
>WENV183725837
PJQF01022841
[PJQF] biofilm metagenome; biomolecule (vanillin) treated reverse osmosis membrane biofilm
63
137
+
Asn
GTT
[ENA]
¡û
>WENV183740908
PJUF01017052
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
3
77
+
Asn
GTT
[ENA]
¡û
>WENV183740918
PJUF01017817
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
1113
1039
-
Asn
GTT
[ENA]
¡û
>WENV183742387
PJUH01021110
[PJUH] feces metagenome; Chicken feces (2) enriched on wood chips: alkali lignin treatment
284
358
+
Asn
GTT
[ENA]
¡û
>WENV170468400
CEVF01030749
[CEVF] marine metagenome genome assembly TARA_124_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
43866
43790
-
Asn
GTT
[ENA]
¡û
>WENV170643749
JMBV01000472
[JMBV] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
8038
8113
+
Asn
GTT
[ENA]
¡û
>WENV170644578
JMBW01032864
[JMBW] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
337
262
-
Asn
GTT
[ENA]
¡û
>WENV170650539
JRYE01003114
[JRYE] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 4 ppm DO
4
80
+
Asn
GTT
[ENA]
¡û
>WENV170660212
JXWT01032598
[JXWT] soil metagenome; rice field; elevated CO2 plus elevated temperature
130
204
+
Asn
GTT
[ENA]
¡û
>WENV170721350
LSQX01186998
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
34602
34678
+
Asn
GTT
[ENA]
¡û
>WENV170967405
MTKW01001264
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
80439
80513
+
Asn
GTT
[ENA]
¡û
>WENV170972232
MTKX01023804
[MTKX] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
3393
3467
+
Asn
GTT
[ENA]
¡û
>WENV170989865
MWVZ01127172
[MWVZ] soil metagenome; MS6-5 sample; Antarctic (ecotone) soil
288
362
+
Asn
GTT
[ENA]
¡û
>WENV170989957
MWVZ01162516
[MWVZ] soil metagenome; MS6-5 sample; Antarctic (ecotone) soil
292
218
-
Asn
GTT
[ENA]
¡û
>WENV170999523
MWWK01078857
[MWWK] soil metagenome; BG12-3 sample; Antarctic (ecotone) soil
240
164
-
Asn
GTT
[ENA]
¡û
>W09107706
ABLI01000009
Bacteroidota
Candidatus Amoebophilus asiaticus asiaticus 5a2 [ABLI]
22373
22447
+
Asn
GTT
[ENA]
¡û
>W1810393014
PYAW01000001
Bacteroidota
Chitinophaga niastensis DSM 24859 [PYAW]
919202
919276
+
Asn
GTT
[ENA]
¡û
>W1810692640
QLKR01000006
Bacteroidota
Niabella yanshanensis HAMBI_3031 [QLKR]
183388
183462
+
Asn
GTT
[ENA]
¡û
>W1810694440
QLMA01000002
Bacteroidota
Chitinophaga dinghuensis DSM 29821 [QLMA]
20702
20776
+
Asn
GTT
[ENA]
¡û
>W1810694441
QLMA01000002
Bacteroidota
Chitinophaga dinghuensis DSM 29821 [QLMA]
25794
25868
+
Asn
GTT
[ENA]
¡û
>W1810695373
QLNL01000001
Bacteroidota
Chitinophaga ginsengisegetis 28_1 [QLNL]
1235285
1235211
-
Asn
GTT
[ENA]
¡û
>W1810858520
QTJV01000002
Bacteroidota
Chitinophaga silvisoli K20C18050901 [QTJV]
601317
601243
-
Asn
GTT
[ENA]
¡û
>C151076128
CP011071
Bacteroidota
Allomuricauda lutaonensis CC-HSB-11 [CP011071]
1705458
1705534
+
Asn
GTT
[Ensembl]
¡û
>W2010169467
CABFVU010000001
Bacteroidota
Chitinophaga polysaccharea CSUR P9684 [CABFVU]
2207312
2207238
-
Asn
GTT
[ENA]
¡û
>W2010169468
CABFVU010000001
Bacteroidota
Chitinophaga polysaccharea CSUR P9684 [CABFVU]
2199903
2199829
-
Asn
GTT
[ENA]
¡û
>W2010490865
JAAJTK010000007
Bacteroidota
Fluviicola sp. SGL-29 [JAAJTK]
73819
73745
-
Asn
GTT
[ENA]
¡û
>W2010544167
JAARML010000001
Bacteroidota
Pseudoflavitalea sp. X16 [JAARML]
1130765
1130839
+
Asn
GTT
[ENA]
¡û
>W2010586278
JABAOB010000005
Bacteroidota
Chitinophaga sp. Ak27 [JABAOB]
399068
398994
-
Asn
GTT
[ENA]
¡û
>W2010714041
JACHVO010000003
Bacteroidota
Chitinophaga sancti 1232 [JACHVO]
944765
944839
+
Asn
GTT
[ENA]
¡û
>W2011578073
SGXA01000002
Bacteroidota
Pseudobacter ginsenosidimutans DSM 18116 [SGXA]
1257217
1257291
+
Asn
GTT
[ENA]
¡û
>W2012002609
VEHN01000002
Bacteroidota
Filimonas lacunae DE0057 [VEHN]
823528
823454
-
Asn
GTT
[ENA]
¡û
>W2012048623
VIWO01000001
Bacteroidota
Chitinophaga polysaccharea 1209 [VIWO]
898183
898257
+
Asn
GTT
[ENA]
¡û
>W2012202903
VWWO01000001
Bacteroidota
Chitinophaga sp. Cy-1792 [VWWO]
903539
903465
-
Asn
GTT
[ENA]
¡û
>W2012202904
VWWO01000001
Bacteroidota
Chitinophaga sp. Cy-1792 [VWWO]
902395
902321
-
Asn
GTT
[ENA]
¡û
>W2012202905
VWWO01000001
Bacteroidota
Chitinophaga sp. Cy-1792 [VWWO]
901593
901519
-
Asn
GTT
[ENA]
¡û
>W2012426505
WRXN01000001
Bacteroidota
Chitinophaga sp. ysch24 [WRXN]
449289
449215
-
Asn
GTT
[ENA]
¡û
>W2110027371
BMJC01000004
Bacteroidota
Puia dinghuensis CGMCC 1.15448 [BMJC]
448266
448192
-
Asn
GTT
[ENA]
¡û
>W2110493973
JAFFJX010000012
Bacteroidota
Pseudoflavitalea sp. SYSU D01084 [JAFFJX]
640
566
-
Asn
GTT
[ENA]
¡û
>W2110503696
JAFIQX010000002
Bacteroidota
Niastella sp. SYSU D00799 [JAFIQX]
3555
3629
+
Asn
GTT
[ENA]
¡û
>C201212220
CP048113
Bacteroidota
Chitinophaga sp. H33E-04 [CP048113]
4695871
4695797
-
Asn
GTT
-
¡û
>C211367331
CP079215
Bacteroidota
Niabella sp. I65 [CP079215]
2404092
2404019
-
Asn
GTT
-
¡û
>W1510021036
BBYI01000008
Bacteroidota
Lentimicrobium saccharophilum TBC1 [BBYI]
144062
144138
+
Asn
GTT
[ENA]
¡û
>C241065911
CP042431
Bacteroidota
Pseudobacter ginsenosidimutans Gsoil 221 [CP042431]
1848808
1848734
-
Asn
GTT
-
¡û
>C241325458
CP135920
Bacteroidota
Paraflavitalea speifideaquila BL16E [CP135920]
188296
188222
-
Asn
GTT
-
¡û
>C241352462
CP139960
Bacteroidota
Niabella yanshanensis HAMBI_3031 [CP139960]
3646214
3646140
-
Asn
GTT
-
¡û
>W1610514954
FMAR01000002
Bacteroidota
Chitinophaga costaii [FMAR]
295674
295748
+
Asn
GTT
[ENA]
¡û
>W1710500644
FMAR01000002
Bacteroidota
Chitinophaga costaii [FMAR]
295674
295748
+
Asn
GTT
[ENA]
¡û
>W1710512681
FMZO01000013
Bacteroidota
Niabella drilacis [FMZO]
74308
74384
+
Asn
GTT
[ENA]
¡û
>W1710544790
FOBB01000001
Bacteroidota
Chitinophaga rupis [FOBB]
976471
976545
+
Asn
GTT
[ENA]
¡û
>W1710570089
FOUX01000003
Bacteroidota
Chitinophaga sp. YR627 [FOUX]
242988
242914
-
Asn
GTT
[ENA]
¡û
>W1710583476
FQUU01000027
Bacteroidota
Flavisolibacter ginsengisoli DSM 18119 [FQUU]
23145
23071
-
Asn
GTT
[ENA]
¡û
>W1710592501
FRCN01000002
Bacteroidota
Chitinophaga sp. CF418 [FRCN]
460913
460987
+
Asn
GTT
[ENA]
¡û
>W1710601091
FUWZ01000002
Bacteroidota
Chitinophaga eiseniae [FUWZ]
1233541
1233467
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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