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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.241736 (43 seq.)
>W1711342429
MCHF01000002
Bacillota
Dehalobacter sp. TeCB1 [MCHF]
169772
169847
+
Lys
TTT
[ENA]
¡û
>W131237153
AUMW01000016
Bacillota
Desulfotruncus alcoholivorax DSM 16058 [AUMW]
33186
33261
+
Lys
TTT
[ENA]
¡û
>WENV180096897
MTBK01154037
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
2427
2352
-
Lys
TTT
[ENA]
¢þ
>WENV180345901
OBLN01010541
[OBLN] sediment metagenome; sediment
370
445
+
Lys
TTT
[ENA]
¢þ
>w002200
AAAW04000006
Bacillota
Desulfitobacterium hafniense DCB-2 [AAAW]
68725
68648
-
Lys
TTT
[ENA]
¡û
>w002185
AAAW04000006
Bacillota
Desulfitobacterium hafniense DCB-2 [AAAW]
71876
71799
-
Lys
TTT
[ENA]
¡û
>w002153
AAAW04000003
Bacillota
Desulfitobacterium hafniense DCB-2 [AAAW]
607233
607310
+
Lys
TTT
[ENA]
¡û
>WENV170560811
CZCA01000628
[CZCA] anaerobic digester metagenome; anaerobic digester
6479
6554
+
Lys
TTT
[ENA]
¢þ
>WENV170561812
CZCB01000135
[CZCB] anaerobic digester metagenome; anaerobic digester
3093
3168
+
Lys
TTT
[ENA]
¢þ
>WENV170561861
CZCB01000256
[CZCB] anaerobic digester metagenome; anaerobic digester
12709
12784
+
Lys
TTT
[ENA]
¢þ
>WENV170561867
CZCB01000257
[CZCB] anaerobic digester metagenome; anaerobic digester
17714
17639
-
Lys
TTT
[ENA]
¢þ
>WENV170562225
CZCB01001440
[CZCB] anaerobic digester metagenome; anaerobic digester
77433
77358
-
Lys
TTT
[ENA]
¢þ
>WENV170562514
CZCB01003269
[CZCB] anaerobic digester metagenome; anaerobic digester
108
183
+
Lys
TTT
[ENA]
¢þ
>WENV170562912
CZCB01007222
[CZCB] anaerobic digester metagenome; anaerobic digester
11757
11682
-
Lys
TTT
[ENA]
¢þ
>WENV170563861
CZCB01032758
[CZCB] anaerobic digester metagenome; anaerobic digester
2366
2441
+
Lys
TTT
[ENA]
¢þ
>WENV170563950
CZCB01038467
[CZCB] anaerobic digester metagenome; anaerobic digester
728
803
+
Lys
TTT
[ENA]
¢þ
>WENV170644572
JMBW01032373
[JMBW] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
121
196
+
Lys
TTT
[ENA]
¢þ
>WENV170644952
JMBX01000378
[JMBX] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
4193
4118
-
Lys
TTT
[ENA]
¢þ
>WENV170686694
LFRM01159419
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
7326
7251
-
Lys
TTT
[ENA]
¢þ
>WENV170721364
LSQX01187583
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
7274
7199
-
Lys
TTT
[ENA]
¢þ
>WENV170721658
LSQX01198925
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
23944
23869
-
Lys
TTT
[ENA]
¢þ
>WENV170722443
LSQX01229806
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
80
155
+
Lys
TTT
[ENA]
¢þ
>WENV170722449
LSQX01229806
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
131784
131859
+
Lys
TTT
[ENA]
¢þ
>WENV170723436
LSQX01268108
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
18409
18484
+
Lys
TTT
[ENA]
¢þ
>WENV170724508
LSQX01308167
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
9186
9111
-
Lys
TTT
[ENA]
¢þ
>WENV170967107
MTKW01000271
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
13212
13287
+
Lys
TTT
[ENA]
¢þ
>WENV170967753
MTKW01003230
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
32254
32329
+
Lys
TTT
[ENA]
¢þ
>WENV170967806
MTKW01003593
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
86554
86629
+
Lys
TTT
[ENA]
¢þ
>WENV170967817
MTKW01003627
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
32769
32694
-
Lys
TTT
[ENA]
¢þ
>WENV170968074
MTKW01005951
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
40225
40150
-
Lys
TTT
[ENA]
¢þ
>WENV170970468
MTKW01071791
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
59
134
+
Lys
TTT
[ENA]
¢þ
>C181058737
CP022121
Bacillota
Dehalobacterium formicoaceticum DMC [CP022121]
839698
839773
+
Lys
TTT
-
¡û
>C09103989
CP001336
Bacillota
Desulfitobacterium hafniense DCB-2 [CP001336]
2798026
2798101
+
Lys
TTT
[Ensembl]
¡û
>C09104004
CP001336
Bacillota
Desulfitobacterium hafniense DCB-2 [CP001336]
2801177
2801252
+
Lys
TTT
[Ensembl]
¡û
>C09104018
CP001336
Bacillota
Desulfitobacterium hafniense DCB-2 [CP001336]
5250552
5250477
-
Lys
TTT
[Ensembl]
¡û
>C11120632
CP002547
Bacillota
Syntrophobotulus glycolicus DSM 8271 [CP002547]
3383945
3383870
-
Lys
TTT
[Ensembl]
¡û
>C11120647
CP002547
Bacillota
Syntrophobotulus glycolicus DSM 8271 [CP002547]
2270377
2270302
-
Lys
TTT
[Ensembl]
¡û
>W1511633427
LDJB01000002
Bacillota
Peptococcaceae bacterium 1109 [LDJB]
210443
210368
-
Lys
TTT
[ENA]
¡û
>W1511633434
LDJB01000007
Bacillota
Peptococcaceae bacterium 1109 [LDJB]
27455
27380
-
Lys
TTT
[ENA]
¡û
>W1610190441
FCFD01000026
Bacillota
uncultured Clostridia bacterium Clostridia [FCFD]
17714
17639
-
Lys
TTT
[ENA]
¡û
>W1610606450
LFSX01000065
Bacillota
Clostridiales bacterium DTU010 [LFSX]
7326
7251
-
Lys
TTT
[ENA]
¡û
>W1710192057
FCFD01000026
Bacillota
uncultured Clostridia bacterium Clostridia [FCFD]
17714
17639
-
Lys
TTT
[ENA]
¡û
>W1710727737
LFSX01000065
Bacillota
Clostridiales bacterium DTU010 [LFSX]
7326
7251
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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