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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.24185 (64 seq.)
>W1711272803
LZFP01000001
Bacteroidota
Maribacter hydrothermalis T28 [LZFP]
591851
591941
+
Ser
GGA
[ENA]
¡û
>C171010424
CP011318
Bacteroidota
Maribacter sp. 1_2014MBL_MicDiv [CP011318]
2601165
2601255
+
Ser
GGA
-
¡û
>W141079183
ATLH01000029
Bacteroidota
Cellulophaga baltica 13 [ATLH]
284218
284130
-
Ser
GGA
[ENA]
¡û
>W141079218
ATLI01000026
Bacteroidota
Cellulophaga baltica 18 [ATLI]
288559
288471
-
Ser
GGA
[ENA]
¡û
>W141079250
ATLJ01000034
Bacteroidota
Cellulophaga baltica NN016038 [ATLJ]
222685
222597
-
Ser
GGA
[ENA]
¡û
>WENV182587404
OJHM01003527
[OJHM] seawater metagenome; Sea water
775
863
+
Ser
GGA
[ENA]
¡û
>WENV183748990
PPFU01105065
[PPFU] hypolithon metagenome; Antarctic Hypolithon
965
877
-
Ser
GGA
[ENA]
¡û
>WENV170016155
AZIJ01013286
[AZIJ] marine sediment metagenome; enrichment culture of sample MGS-ElMAX(UA) from oil contaminated site at the El-Max
1691
1603
-
Ser
GGA
[ENA]
¡û
>WENV170263699
CERC01066615
[CERC] marine metagenome genome assembly TARA_070_MES_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
35112
35202
+
Ser
GGA
[ENA]
¡û
>WENV170265149
CERD01114373
[CERD] marine metagenome genome assembly TARA_070_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
35110
35200
+
Ser
GGA
[ENA]
¡û
>WENV170300405
CESG01122411
[CESG] marine metagenome genome assembly TARA_078_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
336
246
-
Ser
GGA
[ENA]
¡û
>WENV170822978
MDSY01049578
[MDSY] marine metagenome; seawater
22256
22346
+
Ser
GGA
[ENA]
¡û
>C191023086
CP022985
Bacteroidota
Mariniflexile sp. TRM1-10 [CP022985]
2203412
2203500
+
Ser
GGA
-
¡û
>C191182951
CP040812
Bacteroidota
Antarcticibacterium flavum KCTC 52984 [CP040812]
2603472
2603560
+
Ser
GGA
-
¡û
>W1910547508
FZNV01000001
Bacteroidota
Maribacter sedimenticola DSM 19840 [FZNV]
633677
633765
+
Ser
GGA
[ENA]
¡û
>W1910693637
MDGN01000054
Bacteroidota
Maribacter sp. 4U21 [MDGN]
94067
94155
+
Ser
GGA
[ENA]
¡û
>W1810351312
PVEO01000001
Bacteroidota
Jejuia pallidilutea DSM 21165 [PVEO]
787835
787747
-
Ser
GGA
[ENA]
¡û
>W1810596529
QGGP01000001
Bacteroidota
Xanthomarina spongicola DSM 22637 [QGGP]
602809
602897
+
Ser
GGA
[ENA]
¡û
>W1810757321
QPHL01000012
Bacteroidota
Winogradskyella sp. KYW1333 [QPHL]
91023
90935
-
Ser
GGA
[ENA]
¡û
>C151062864
CP009976
Bacteroidota
Cellulophaga baltica 18 [CP009976]
1756842
1756930
+
Ser
GGA
[Ensembl]
¡û
>W2010429269
FZNV01000001
Bacteroidota
Maribacter sedimenticola DSM 19840 [FZNV]
633677
633765
+
Ser
GGA
[ENA]
¡û
>W2010597184
JABFDF010000005
Bacteroidota
Winogradskyella sp. HL116 [JABFDF]
119815
119727
-
Ser
GGA
[ENA]
¡û
>W2010827451
MDGN01000054
Bacteroidota
Maribacter sp. 4U21 [MDGN]
94067
94155
+
Ser
GGA
[ENA]
¡û
>W2011479235
RQPJ01000001
Bacteroidota
Arenibacter sp. GUO666 [RQPJ]
89828
89740
-
Ser
GGA
[ENA]
¡û
>W2011600260
SIRS01000003
Bacteroidota
Hyunsoonleella pacifica SW033 [SIRS]
186275
186187
-
Ser
GGA
[ENA]
¡û
>W2011600309
SIRT01000007
Bacteroidota
Hyunsoonleella sp. T58 [SIRT]
33910
33998
+
Ser
GGA
[ENA]
¡û
>W2011652619
SNZW01000011
Bacteroidota
Maribacter caenipelagi CECT 8455 [SNZW]
777147
777235
+
Ser
GGA
[ENA]
¡û
>W2011665430
SORL01000008
Bacteroidota
Algibacter wandonensis CECT 8301 [SORL]
167036
166948
-
Ser
GGA
[ENA]
¡û
>W2011980492
VDCS01000008
Bacteroidota
Tamlana sp. CW2-9 [VDCS]
162889
162977
+
Ser
GGA
[ENA]
¡û
>W2012042100
VISB01000001
Bacteroidota
Maribacter sp. MAR_2009_72 [VISB]
3444014
3444102
+
Ser
GGA
[ENA]
¡û
>W2012102720
VOGY01000008
Bacteroidota
Algibacter sp. H164 [VOGY]
154547
154635
+
Ser
GGA
[ENA]
¡û
>W2012107724
VOSC01000012
Bacteroidota
Seonamhaeicola algicola Gy8 [VOSC]
21041
20953
-
Ser
GGA
[ENA]
¡û
>W2012124198
VRKQ01000010
Bacteroidota
Seonamhaeicola maritimus 1505 [VRKQ]
1075088
1075176
+
Ser
GGA
[ENA]
¡û
>W2012157105
VVIN01000030
Bacteroidota
Arenibacter sp. JC631 [VVIN]
19684
19772
+
Ser
GGA
[ENA]
¡û
>W2012205566
VXDE01000002
Bacteroidota
Algibacter wandonensis WS-MY22 [VXDE]
167235
167147
-
Ser
GGA
[ENA]
¡û
>W2012435359
WTLE01000011
Bacteroidota
Cellulophaga sp. Z1A5H [WTLE]
32041
31953
-
Ser
GGA
[ENA]
¡û
>W2110021040
BMEE01000002
Bacteroidota
Hyunsoonleella pacifica CGMCC 1.11009 [BMEE]
1058985
1059073
+
Ser
GGA
[ENA]
¡û
>W2110361147
JADOET010000005
Bacteroidota
Winogradskyella marina F6397 [JADOET]
217932
218020
+
Ser
GGA
[ENA]
¡û
>W2110371233
JADPRW010000036
Bacteroidota
Cellulophaga sp. E16_2 [JADPRW]
67764
67852
+
Ser
GGA
[ENA]
¡û
>W2110532334
JAGEVG010000015
Bacteroidota
Gelidibacter pelagius DF109 [JAGEVG]
104611
104699
+
Ser
GGA
[ENA]
¡û
>W2110611930
JAHKPX010000004
Bacteroidota
Maribacter dokdonensis C3R19 [JAHKPX]
780514
780426
-
Ser
GGA
[ENA]
¡û
>W2110716655
JAJAPX010000001
Bacteroidota
Tamlana sp. 62-3 [JAJAPX]
304407
304319
-
Ser
GGA
[ENA]
¡û
>W1510012919
BBNR01000004
Bacteroidota
Jejuia pallidilutea JCM 19301 [BBNR]
219432
219344
-
Ser
GGA
[ENA]
¡û
>W1510012945
BBNS01000002
Bacteroidota
Jejuia pallidilutea JCM 19302 [BBNS]
219290
219202
-
Ser
GGA
[ENA]
¡û
>W1510013032
BBNY01000001
Bacteroidota
Jejuia pallidilutea JCM 19538 [BBNY]
22225
22313
+
Ser
GGA
[ENA]
¡û
>C231312668
CP092099
Bacteroidota
Sabulilitoribacter sp. BrNp1-15 [CP092099]
110158
110070
-
Ser
GGA
-
¡û
>C231320448
CP092597
Bacteroidota
Cellulophaga baltica 4 [CP092597]
2367779
2367691
-
Ser
GGA
-
¡û
>C231374626
CP096884
Bacteroidota
Seonamhaeicola sp. ML3 [CP096884]
1011298
1011210
-
Ser
GGA
-
¡û
>C241114937
CP047027
Bacteroidota
Cellulophaga sp. L1A9 [CP047027]
2502796
2502884
+
Ser
GGA
-
¡û
>C241115023
CP047029
Bacteroidota
Algibacter sp. L1A34 [CP047029]
1766875
1766963
+
Ser
GGA
-
¡û
>C241115090
CP047030
Bacteroidota
Algibacter sp. L3A6 [CP047030]
1141900
1141812
-
Ser
GGA
-
¡û
>W1511398886
JTDV01000013
Bacteroidota
Tamlana nanhaiensis FHC16 [JTDV]
169531
169619
+
Ser
GGA
[ENA]
¡û
>W1610587440
LDKC01000001
Bacteroidota
Tamlana sp. s12 [LDKC]
142456
142544
+
Ser
GGA
[ENA]
¡û
>W1610588065
LDPE01000001
Bacteroidota
Maribacter dokdonensis DSW-8 [LDPE]
1917368
1917278
-
Ser
GGA
[ENA]
¡û
>W1611032152
LZFP01000001
Bacteroidota
Maribacter hydrothermalis T28 [LZFP]
591851
591941
+
Ser
GGA
[ENA]
¡û
>W1710514677
FNBD01000001
Bacteroidota
Cellulophaga baltica [FNBD]
286307
286219
-
Ser
GGA
[ENA]
¡û
>W1710575133
FOYX01000001
Bacteroidota
Maribacter stanieri [FOYX]
1484999
1485089
+
Ser
GGA
[ENA]
¡û
>W1710587335
FQYK01000003
Bacteroidota
Algibacter luteus lutea [FQYK]
492444
492532
+
Ser
GGA
[ENA]
¡û
>W1710587897
FQYX01000011
Bacteroidota
Arenibacter nanhaiticus [FQYX]
38204
38292
+
Ser
GGA
[ENA]
¡û
>W1710589150
FQZX01000001
Bacteroidota
Maribacter aquivivus [FQZX]
1522388
1522478
+
Ser
GGA
[ENA]
¡û
>W1710595582
FTMA01000001
Bacteroidota
Maribacter ulvicola [FTMA]
1244188
1244278
+
Ser
GGA
[ENA]
¡û
>W1710602700
FUYL01000003
Bacteroidota
Maribacter arcticus [FUYL]
173825
173735
-
Ser
GGA
[ENA]
¡û
>W1710606136
FWXO01000001
Bacteroidota
Cellulophaga tyrosinoxydans [FWXO]
393470
393380
-
Ser
GGA
[ENA]
¡û
>W1710706570
LDKC01000001
Bacteroidota
Tamlana sp. s12 [LDKC]
142456
142544
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK