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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.242154 (15 seq.)
>WENV180099057
MTBK01284488
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
69
144
+
Pro
CGG
[ENA]
¢þ
>WENV180851168
ODKV01032465
[ODKV] human metagenome; G_DNA_Stool
534
609
+
Pro
CGG
[ENA]
¢þ
>W141088601
AUVG01000075
Bacillota
[Clostridium] cellulosi CS-4-4 [AUVG]
206505
206430
-
Pro
CGG
[ENA]
¡û
>WENV170563040
CZCB01009140
[CZCB] anaerobic digester metagenome; anaerobic digester
623
548
-
Pro
CGG
[ENA]
¢þ
>WENV170969832
MTKW01041295
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
10007
9932
-
Pro
CGG
[ENA]
¢þ
>W141804474
JPIC01000013
Bacillota
Mageeibacillus indolicus BVAB3 str. S7-24-11 [JPIC]
39960
40035
+
Pro
CGG
[ENA]
¡û
>W1910859451
NBZD01000001
Bacillota
Mageeibacillus indolicus KA00405 [NBZD]
717575
717650
+
Pro
CGG
[ENA]
¡û
>C10103469
CP001850
Bacillota
Mageeibacillus indolicus UPII9-5 [CP001850]
1253493
1253568
+
Pro
CGG
[Ensembl]
¡û
>C161076023
CP014672
Bacillota
Thermoclostridium stercorarium subsp. thermolacticum DSM 2910 [CP014672]
969134
969209
+
Pro
CGG
[Ensembl]
¡û
>C161076071
CP014673
Bacillota
Thermoclostridium stercorarium subsp. leptospartum DSM 9219 [CP014673]
969913
969988
+
Pro
CGG
[Ensembl]
¡û
>W1610043721
BAZZ01000009
Bacillota
Thermoclostridium stercorarium subsp. thermolacticum JCM 9324 [BAZZ]
74333
74408
+
Pro
CGG
[ENA]
¡û
>C131011039
CP003992
Bacillota
Thermoclostridium stercorarium subsp. stercorarium DSM 8532 [CP003992]
960821
960896
+
Pro
CGG
-
¡û
>C131011905
CP004044
Bacillota
Thermoclostridium stercorarium subsp. stercorarium DSM 8532 [CP004044]
960715
960790
+
Pro
CGG
-
¡û
>W1710040881
BAZZ01000009
Bacillota
Thermoclostridium stercorarium subsp. thermolacticum JCM 9324 [BAZZ]
74333
74408
+
Pro
CGG
[ENA]
¡û
>W1710588758
FQZP01000033
Bacillota
Thermoclostridium caenicola [FQZP]
3703
3778
+
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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