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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.242700 (62 seq.)
>W1711283058
LZOF01000010
Spirochaetota
Brachyspira hampsonii [LZOF]
99109
99182
+
Asn
GTT
[ENA]
¡û
>W1711283088
LZOG01000007
Spirochaetota
Brachyspira hampsonii [LZOG]
5446
5519
+
Asn
GTT
[ENA]
¡û
>W1711307475
MAOX01000004
Spirochaetota
Brachyspira hyodysenteriae [MAOX]
25761
25688
-
Asn
GTT
[ENA]
¡û
>W1711307511
MAOY01000005
Spirochaetota
Brachyspira hyodysenteriae [MAOY]
63028
62955
-
Asn
GTT
[ENA]
¡û
>W1711351565
MDCO01000012
Spirochaetota
Brachyspira hampsonii [MDCO]
711940
712013
+
Asn
GTT
[ENA]
¡û
>W1711507048
MKXF01000018
Spirochaetota
Brachyspira hyodysenteriae [MKXF]
58154
58227
+
Asn
GTT
[ENA]
¡û
>W131093660
AOMM01000457
Spirochaetota
Brachyspira hampsonii 30599 [AOMM]
1683
1756
+
Asn
GTT
[ENA]
¡û
>W131182401
ARQI01000126
Spirochaetota
Brachyspira innocens ATCC 29796 [ARQI]
68136
68063
-
Asn
GTT
[ENA]
¡û
>W131184502
ARSY01000042
Spirochaetota
Brachyspira hyodysenteriae ATCC 27164 [ARSY]
6647
6574
-
Asn
GTT
[ENA]
¡û
>WENV180116970
OARB01001108
[OARB] human gut metagenome; ENVO:feces
945
872
-
Asn
GTT
[ENA]
¢þ
>WENV180117045
OARC01006432
[OARC] human gut metagenome; ENVO:feces
527
454
-
Asn
GTT
[ENA]
¢þ
>WENV180117772
OARM01000064
[OARM] human gut metagenome; ENVO:feces
4129
4202
+
Asn
GTT
[ENA]
¢þ
>W141037632
ALNZ01000017
Spirochaetota
Brachyspira hampsonii 30446 [ALNZ]
145487
145560
+
Asn
GTT
[ENA]
¡û
>WENV180404668
OBSA01025788
[OBSA] human gut metagenome; ENVO:feces
454
527
+
Asn
GTT
[ENA]
¢þ
>WENV181665758
OGOJ01004920
[OGOJ] human gut metagenome; faeces
3288
3361
+
Asn
GTT
[ENA]
¢þ
>WENV181704774
OGPK01000869
[OGPK] human gut metagenome; faeces
16564
16637
+
Asn
GTT
[ENA]
¢þ
>W141275732
JADF01000017
Spirochaetota
Brachyspira alvinipulli ATCC 51933 [JADF]
7105
7178
+
Asn
GTT
[ENA]
¡û
>WENV182964644
OKWR01005034
[OKWR] human gut metagenome; human gut
3705
3632
-
Asn
GTT
[ENA]
¢þ
>WENV183384327
OLYN01002455
[OLYN] human gut metagenome; feces
7127
7200
+
Asn
GTT
[ENA]
¢þ
>WENV183423486
OMBG01002089
[OMBG] human gut metagenome; feces
1412
1339
-
Asn
GTT
[ENA]
¢þ
>WENV183447253
OMCS01003473
[OMCS] human gut metagenome; feces
4469
4542
+
Asn
GTT
[ENA]
¢þ
>WENV183642520
OQVN01006163
[OQVN] human gut metagenome; human gut
102
29
-
Asn
GTT
[ENA]
¢þ
>WENV183648505
OQVS01018182
[OQVS] human gut metagenome; human gut
1375
1448
+
Asn
GTT
[ENA]
¢þ
>WENV183653326
OQVZ01014763
[OQVZ] human gut metagenome; human gut
233
160
-
Asn
GTT
[ENA]
¢þ
>WENV183654330
OQWA01025135
[OQWA] human gut metagenome; human gut
851
924
+
Asn
GTT
[ENA]
¢þ
>WENV170101410
CEAR01031309
[CEAR] gut metagenome; human stools
186
259
+
Asn
GTT
[ENA]
¢þ
>WENV170785417
MDSP01045056
[MDSP] gut metagenome; Stomach gut content
97
24
-
Asn
GTT
[ENA]
¢þ
>C181038078
CP019600
Spirochaetota
Brachyspira hyodysenteriae BH718 [CP019600]
1165664
1165591
-
Asn
GTT
-
¡û
>C191016985
CP019914
Spirochaetota
Brachyspira hampsonii NSH-16 [CP019914]
2358974
2359047
+
Asn
GTT
-
¡û
>W09108419
ABTG01000002
Spirochaetota
Brachyspira murdochii DSM 12563 [ABTG]
319040
319113
+
Asn
GTT
[ENA]
¡û
>W1910000018
AFQM01000035
Spirochaetota
Brachyspira pilosicoli SP16 [AFQM]
17240
17313
+
Asn
GTT
[ENA]
¡û
>C09102346
CP001357
Spirochaetota
Brachyspira hyodysenteriae WA1 WA1; ATCC 49526 [CP001357]
1404507
1404434
-
Asn
GTT
[Ensembl]
¡û
>W1910569127
JJMJ01000027
Spirochaetota
Brachyspira murdochii D13-03603F2 [JJMJ]
4218
4145
-
Asn
GTT
[ENA]
¡û
>W1910569207
JJMV01000006
Spirochaetota
Brachyspira hampsonii bv. II KL-180 [JJMV]
2594530
2594457
-
Asn
GTT
[ENA]
¡û
>W1910574878
JQIU01000008
Spirochaetota
Brachyspira sp. G79 [JQIU]
1449879
1449952
+
Asn
GTT
[ENA]
¡û
>C10101939
CP001959
Spirochaetota
Brachyspira murdochii DSM 12563 [CP001959]
981455
981528
+
Asn
GTT
[Ensembl]
¡û
>C10101984
CP002025
Spirochaetota
Brachyspira pilosicoli 95/1000 [CP002025]
2361773
2361700
-
Asn
GTT
[Ensembl]
¡û
>C11103104
CP002874
Spirochaetota
Brachyspira intermedia PWS/A [CP002874]
707827
707900
+
Asn
GTT
[Ensembl]
¡û
>W1510641516
CVLB01000002
Spirochaetota
Brachyspira suanatina AN4859/03 [CVLB]
4087
4014
-
Asn
GTT
[ENA]
¡û
>W1511506958
JXNA01000077
Spirochaetota
Brachyspira hyodysenteriae 865 [JXNA]
6758
6685
-
Asn
GTT
[ENA]
¡û
>W1511506973
JXNB01000034
Spirochaetota
Brachyspira hyodysenteriae FMV89.3323 [JXNB]
7566
7493
-
Asn
GTT
[ENA]
¡û
>W1511507015
JXNC01000105
Spirochaetota
Brachyspira hyodysenteriae NX [JXNC]
174394
174467
+
Asn
GTT
[ENA]
¡û
>W1511507030
JXND01000016
Spirochaetota
Brachyspira hyodysenteriae B204 [JXND]
7514
7441
-
Asn
GTT
[ENA]
¡û
>W1511507077
JXNE01000055
Spirochaetota
Brachyspira hyodysenteriae B6933 [JXNE]
138211
138284
+
Asn
GTT
[ENA]
¡û
>W1511507088
JXNF01000010
Spirochaetota
Brachyspira hyodysenteriae B78 [JXNF]
50738
50811
+
Asn
GTT
[ENA]
¡û
>W1511507149
JXNG01000055
Spirochaetota
Brachyspira hyodysenteriae B8044 [JXNG]
92574
92647
+
Asn
GTT
[ENA]
¡û
>W1511507166
JXNH01000060
Spirochaetota
Brachyspira hyodysenteriae G21 [JXNH]
7833
7760
-
Asn
GTT
[ENA]
¡û
>W1511507210
JXNI01000091
Spirochaetota
Brachyspira hyodysenteriae G44 [JXNI]
7460
7387
-
Asn
GTT
[ENA]
¡û
>W1511507222
JXNJ01000012
Spirochaetota
Brachyspira hyodysenteriae FM88.90 [JXNJ]
259990
260063
+
Asn
GTT
[ENA]
¡û
>W1511507276
JXNK01000121
Spirochaetota
Brachyspira hyodysenteriae NSW15 [JXNK]
8251
8324
+
Asn
GTT
[ENA]
¡û
>W1511507288
JXNL01000022
Spirochaetota
Brachyspira hyodysenteriae NSW5 [JXNL]
6607
6534
-
Asn
GTT
[ENA]
¡û
>W1511507322
JXNM01000022
Spirochaetota
Brachyspira hyodysenteriae Q17 [JXNM]
6605
6532
-
Asn
GTT
[ENA]
¡û
>W1511507360
JXNN01000035
Spirochaetota
Brachyspira hyodysenteriae ST190 [JXNN]
6611
6538
-
Asn
GTT
[ENA]
¡û
>W1511507387
JXNO01000024
Spirochaetota
Brachyspira hyodysenteriae ST195 [JXNO]
100778
100851
+
Asn
GTT
[ENA]
¡û
>W1511507419
JXNP01000032
Spirochaetota
Brachyspira hyodysenteriae ST210 [JXNP]
8249
8322
+
Asn
GTT
[ENA]
¡û
>W1511507448
JXNQ01000006
Spirochaetota
Brachyspira hyodysenteriae ST265 [JXNQ]
84880
84953
+
Asn
GTT
[ENA]
¡û
>W1511507493
JXNR01000063
Spirochaetota
Brachyspira hyodysenteriae Vic2 [JXNR]
7595
7522
-
Asn
GTT
[ENA]
¡û
>W1511507521
JXNS01000071
Spirochaetota
Brachyspira hyodysenteriae WA100 [JXNS]
99146
99219
+
Asn
GTT
[ENA]
¡û
>C161092123
CP015910
Spirochaetota
Brachyspira hyodysenteriae ATCC 27164 B-78 [CP015910]
2316303
2316376
+
Asn
GTT
[Ensembl]
¡û
>C131001480
CP002873
Spirochaetota
Brachyspira pilosicoli P43/6/78 [CP002873]
916661
916734
+
Asn
GTT
[Ensembl]
¡û
>C131003833
CP003490
Spirochaetota
Brachyspira pilosicoli B2904 [CP003490]
1077943
1077870
-
Asn
GTT
[Ensembl]
¡û
>C131019654
HE793032
Spirochaetota
Brachyspira pilosicoli WesB [HE793032]
1821227
1821300
+
Asn
GTT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK