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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.242727 (68 seq.)
>W131093647
AOMM01000291
Spirochaetota
Brachyspira hampsonii 30599 [AOMM]
14492
14418
-
Trp
CCA
[ENA]
¡û
>W131182393
ARQI01000116
Spirochaetota
Brachyspira innocens ATCC 29796 [ARQI]
13856
13930
+
Trp
CCA
[ENA]
¡û
>W131184508
ARSY01000046
Spirochaetota
Brachyspira hyodysenteriae ATCC 27164 [ARSY]
220190
220116
-
Trp
CCA
[ENA]
¡û
>W1711283085
LZOF01000075
Spirochaetota
Brachyspira hampsonii [LZOF]
102044
102118
+
Trp
CCA
[ENA]
¡û
>W1711283096
LZOG01000099
Spirochaetota
Brachyspira hampsonii [LZOG]
37001
36927
-
Trp
CCA
[ENA]
¡û
>W1711307491
MAOX01000018
Spirochaetota
Brachyspira hyodysenteriae [MAOX]
6859
6933
+
Trp
CCA
[ENA]
¡û
>W1711307504
MAOY01000001
Spirochaetota
Brachyspira hyodysenteriae [MAOY]
15897
15823
-
Trp
CCA
[ENA]
¡û
>W1711351560
MDCO01000010
Spirochaetota
Brachyspira hampsonii [MDCO]
138279
138353
+
Trp
CCA
[ENA]
¡û
>W1711507044
MKXF01000010
Spirochaetota
Brachyspira hyodysenteriae [MKXF]
22300
22226
-
Trp
CCA
[ENA]
¡û
>WENV180116973
OARB01001288
[OARB] human gut metagenome; ENVO:feces
778
704
-
Trp
CCA
[ENA]
¢þ
>WENV180117725
OARM01000023
[OARM] human gut metagenome; ENVO:feces
18634
18708
+
Trp
CCA
[ENA]
¢þ
>WENV180231608
OBCN01081405
[OBCN] human gut metagenome; human gut
102
28
-
Trp
CCA
[ENA]
¢þ
>W141037636
ALNZ01000025
Spirochaetota
Brachyspira hampsonii 30446 [ALNZ]
103517
103591
+
Trp
CCA
[ENA]
¡û
>WENV181665653
OGOJ01002973
[OGOJ] human gut metagenome; faeces
6965
7039
+
Trp
CCA
[ENA]
¢þ
>WENV181704827
OGPK01001167
[OGPK] human gut metagenome; faeces
12937
12863
-
Trp
CCA
[ENA]
¢þ
>WENV182038485
OHDE01020155
[OHDE] human gut metagenome; feces
63
137
+
Trp
CCA
[ENA]
¢þ
>WENV182247161
OHSM01045887
[OHSM] human gut metagenome; feces
443
369
-
Trp
CCA
[ENA]
¢þ
>W141275727
JADF01000012
Spirochaetota
Brachyspira alvinipulli ATCC 51933 [JADF]
3702
3776
+
Trp
CCA
[ENA]
¡û
>WENV182915375
OKTR01021137
[OKTR] human gut metagenome; feces
19
93
+
Trp
CCA
[ENA]
¢þ
>WENV182958451
OKWH01012239
[OKWH] human gut metagenome; human gut
900
826
-
Trp
CCA
[ENA]
¢þ
>WENV182964346
OKWR01001249
[OKWR] human gut metagenome; human gut
11245
11171
-
Trp
CCA
[ENA]
¢þ
>WENV183384295
OLYN01002125
[OLYN] human gut metagenome; feces
1798
1724
-
Trp
CCA
[ENA]
¢þ
>WENV183423452
OMBG01001721
[OMBG] human gut metagenome; feces
6208
6134
-
Trp
CCA
[ENA]
¢þ
>WENV183447026
OMCS01000746
[OMCS] human gut metagenome; feces
5038
5112
+
Trp
CCA
[ENA]
¢þ
>WENV183640470
OQVL01004813
[OQVL] human gut metagenome; human gut
7876
7802
-
Trp
CCA
[ENA]
¢þ
>WENV183642724
OQVN01023466
[OQVN] human gut metagenome; human gut
796
722
-
Trp
CCA
[ENA]
¢þ
>WENV183643388
OQVO01010882
[OQVO] human gut metagenome; human gut
125
199
+
Trp
CCA
[ENA]
¢þ
>WENV183647932
OQVS01004473
[OQVS] human gut metagenome; human gut
333
407
+
Trp
CCA
[ENA]
¢þ
>WENV183651390
OQVT01146946
[OQVT] human gut metagenome; human gut
306
232
-
Trp
CCA
[ENA]
¢þ
>WENV183652275
OQVU01027042
[OQVU] human gut metagenome; human gut
1226
1152
-
Trp
CCA
[ENA]
¢þ
>WENV183653376
OQVZ01018787
[OQVZ] human gut metagenome; human gut
207
281
+
Trp
CCA
[ENA]
¢þ
>WENV170785690
MDSP01275130
[MDSP] gut metagenome; Stomach gut content
489
563
+
Trp
CCA
[ENA]
¢þ
>WENV170785704
MDSP01291255
[MDSP] gut metagenome; Stomach gut content
417
491
+
Trp
CCA
[ENA]
¢þ
>W09108426
ABTG01000003
Spirochaetota
Brachyspira murdochii DSM 12563 [ABTG]
18827
18901
+
Trp
CCA
[ENA]
¡û
>C181038071
CP019600
Spirochaetota
Brachyspira hyodysenteriae BH718 [CP019600]
2383171
2383245
+
Trp
CCA
-
¡û
>C191017002
CP019914
Spirochaetota
Brachyspira hampsonii NSH-16 [CP019914]
1097029
1096955
-
Trp
CCA
-
¡û
>W1910000006
AFQM01000008
Spirochaetota
Brachyspira pilosicoli SP16 [AFQM]
30328
30402
+
Trp
CCA
[ENA]
¡û
>W1910569125
JJMJ01000017
Spirochaetota
Brachyspira murdochii D13-03603F2 [JJMJ]
2217
2291
+
Trp
CCA
[ENA]
¡û
>W1910569208
JJMV01000006
Spirochaetota
Brachyspira hampsonii bv. II KL-180 [JJMV]
2570459
2570385
-
Trp
CCA
[ENA]
¡û
>W1910574874
JQIU01000007
Spirochaetota
Brachyspira sp. G79 [JQIU]
183233
183159
-
Trp
CCA
[ENA]
¡û
>C09102342
CP001357
Spirochaetota
Brachyspira hyodysenteriae WA1 WA1; ATCC 49526 [CP001357]
2621915
2621989
+
Trp
CCA
[Ensembl]
¡û
>C10101948
CP001959
Spirochaetota
Brachyspira murdochii DSM 12563 [CP001959]
2225501
2225575
+
Trp
CCA
[Ensembl]
¡û
>C10101979
CP002025
Spirochaetota
Brachyspira pilosicoli 95/1000 [CP002025]
1689792
1689866
+
Trp
CCA
[Ensembl]
¡û
>C11103122
CP002874
Spirochaetota
Brachyspira intermedia PWS/A [CP002874]
2689901
2689827
-
Trp
CCA
[Ensembl]
¡û
>W1510641494
CVLB01000001
Spirochaetota
Brachyspira suanatina AN4859/03 [CVLB]
398415
398489
+
Trp
CCA
[ENA]
¡û
>W1511506941
JXNA01000042
Spirochaetota
Brachyspira hyodysenteriae 865 [JXNA]
105040
105114
+
Trp
CCA
[ENA]
¡û
>W1511506979
JXNB01000064
Spirochaetota
Brachyspira hyodysenteriae FMV89.3323 [JXNB]
212387
212313
-
Trp
CCA
[ENA]
¡û
>W1511506994
JXNC01000003
Spirochaetota
Brachyspira hyodysenteriae NX [JXNC]
108752
108826
+
Trp
CCA
[ENA]
¡û
>W1511507028
JXND01000015
Spirochaetota
Brachyspira hyodysenteriae B204 [JXND]
32018
32092
+
Trp
CCA
[ENA]
¡û
>W1511507060
JXNE01000010
Spirochaetota
Brachyspira hyodysenteriae B6933 [JXNE]
14788
14714
-
Trp
CCA
[ENA]
¡û
>W1511507107
JXNF01000061
Spirochaetota
Brachyspira hyodysenteriae B78 [JXNF]
101981
102055
+
Trp
CCA
[ENA]
¡û
>W1511507134
JXNG01000027
Spirochaetota
Brachyspira hyodysenteriae B8044 [JXNG]
99989
100063
+
Trp
CCA
[ENA]
¡û
>W1511507174
JXNH01000076
Spirochaetota
Brachyspira hyodysenteriae G21 [JXNH]
220208
220134
-
Trp
CCA
[ENA]
¡û
>W1511507212
JXNI01000098
Spirochaetota
Brachyspira hyodysenteriae G44 [JXNI]
109240
109314
+
Trp
CCA
[ENA]
¡û
>W1511507219
JXNJ01000010
Spirochaetota
Brachyspira hyodysenteriae FM88.90 [JXNJ]
105472
105546
+
Trp
CCA
[ENA]
¡û
>W1511507251
JXNK01000021
Spirochaetota
Brachyspira hyodysenteriae NSW15 [JXNK]
36825
36899
+
Trp
CCA
[ENA]
¡û
>W1511507280
JXNL01000004
Spirochaetota
Brachyspira hyodysenteriae NSW5 [JXNL]
102999
103073
+
Trp
CCA
[ENA]
¡û
>W1511507313
JXNM01000006
Spirochaetota
Brachyspira hyodysenteriae Q17 [JXNM]
14867
14793
-
Trp
CCA
[ENA]
¡û
>W1511507367
JXNN01000054
Spirochaetota
Brachyspira hyodysenteriae ST190 [JXNN]
104342
104416
+
Trp
CCA
[ENA]
¡û
>W1511507396
JXNO01000061
Spirochaetota
Brachyspira hyodysenteriae ST195 [JXNO]
101781
101855
+
Trp
CCA
[ENA]
¡û
>W1511507430
JXNP01000074
Spirochaetota
Brachyspira hyodysenteriae ST210 [JXNP]
104280
104354
+
Trp
CCA
[ENA]
¡û
>W1511507446
JXNQ01000005
Spirochaetota
Brachyspira hyodysenteriae ST265 [JXNQ]
103982
104056
+
Trp
CCA
[ENA]
¡û
>W1511507481
JXNR01000028
Spirochaetota
Brachyspira hyodysenteriae Vic2 [JXNR]
104092
104166
+
Trp
CCA
[ENA]
¡û
>W1511507532
JXNS01000170
Spirochaetota
Brachyspira hyodysenteriae WA100 [JXNS]
212024
211950
-
Trp
CCA
[ENA]
¡û
>C161092146
CP015910
Spirochaetota
Brachyspira hyodysenteriae ATCC 27164 B-78 [CP015910]
1099917
1099843
-
Trp
CCA
[Ensembl]
¡û
>C131001501
CP002873
Spirochaetota
Brachyspira pilosicoli P43/6/78 [CP002873]
1580982
1580908
-
Trp
CCA
[Ensembl]
¡û
>C131003828
CP003490
Spirochaetota
Brachyspira pilosicoli B2904 [CP003490]
2488842
2488768
-
Trp
CCA
[Ensembl]
¡û
>C131019647
HE793032
Spirochaetota
Brachyspira pilosicoli WesB [HE793032]
396703
396777
+
Trp
CCA
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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