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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.242732 (42 seq.)
>W131108922
APGP01000023
Bacillota
Caldicellulosiruptor sp. F32 [APGP]
3583
3658
+
Met
CAT
[ENA]
¡û
>W131218324
ATXO01000019
Bacillota
Caldicellulosiruptor acetigenus DSM 7040 [ATXO]
8895
8970
+
Met
CAT
[ENA]
¡û
>C006909
CP000679
Bacillota
Caldicellulosiruptor saccharolyticus DSM 8903 [CP000679]
2876634
2876559
-
Met
CAT
[Ensembl]
¡û
>WENV180014278
FPIC01136486
[FPIC] soil metagenome; Soil
203
128
-
Ile2
CAT
[ENA]
¢þ
>WENV181226057
OFDK01000010
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
95761
95686
-
Ile2
CAT
[ENA]
¢þ
>WENV181285428
OFGS01000330
[OFGS] hot springs metagenome; Water and soil
1388
1313
-
Ile2
CAT
[ENA]
¢þ
>C191131097
CP034791
Bacillota
Caldicellulosiruptor changbaiensis CBS-Z [CP034791]
893928
894003
+
Met
CAT
-
¡û
>W09104544
AALW01000019
Bacillota
Caldicellulosiruptor saccharolyticus DSM 8903 [AALW]
952
877
-
Met
CAT
[ENA]
¡û
>W09113836
ABYZ01000018
Bacillota
Caldicellulosiruptor bescii DSM 6725 [ABYZ]
294
369
+
Met
CAT
[ENA]
¡û
>C09100846
CP001393
Bacillota
Caldicellulosiruptor bescii DSM 6725 [CP001393]
2086199
2086124
-
Met
CAT
[Ensembl]
¡û
>W1911155351
NPJY01000001
Bacillota
Caldicellulosiruptor bescii RKCB122 [NPJY]
2237789
2237714
-
Met
CAT
[ENA]
¡û
>W1911244030
NSHA01000001
Bacillota
Caldicellulosiruptor bescii RKCB123 [NSHA]
2231589
2231664
+
Met
CAT
[ENA]
¡û
>W1911244091
NSHB01000001
Bacillota
Caldicellulosiruptor bescii RKCB125 [NSHB]
1792491
1792416
-
Met
CAT
[ENA]
¡û
>W1911244132
NSHC01000001
Bacillota
Caldicellulosiruptor bescii RKCB126 [NSHC]
2345458
2345383
-
Met
CAT
[ENA]
¡û
>W1911244168
NSHD01000001
Bacillota
Caldicellulosiruptor bescii RKCB121 [NSHD]
784215
784290
+
Met
CAT
[ENA]
¡û
>W1911244236
NSHE01000001
Bacillota
Caldicellulosiruptor bescii RKCB120 [NSHE]
2255572
2255497
-
Met
CAT
[ENA]
¡û
>W1911572531
PDCA01000001
Bacillota
Caldicellulosiruptor bescii RKCB124 [PDCA]
694879
694954
+
Met
CAT
[ENA]
¡û
>W1911572614
PDCB01000001
Bacillota
Caldicellulosiruptor bescii RKCB129 [PDCB]
130447
130372
-
Met
CAT
[ENA]
¡û
>W1911572626
PDCD01000002
Bacillota
Caldicellulosiruptor bescii RKCB128 [PDCD]
779091
779166
+
Met
CAT
[ENA]
¡û
>W1810052236
PDCC01000001
Bacillota
Caldicellulosiruptor bescii RKCB127 [PDCC]
251229
251304
+
Met
CAT
[ENA]
¡û
>W1810071884
PEEZ01000002
Bacillota
Caldicellulosiruptor bescii RKCB131 [PEEZ]
733212
733287
+
Met
CAT
[ENA]
¡û
>W1810071933
PEFA01000001
Bacillota
Caldicellulosiruptor bescii RKCB130 [PEFA]
1767321
1767396
+
Met
CAT
[ENA]
¡û
>W1810072016
PEFB01000001
Bacillota
Caldicellulosiruptor bescii RKCB133 [PEFB]
54202
54127
-
Met
CAT
[ENA]
¡û
>W1810368012
PVZD01000002
Bacillota
Caldicellulosiruptor bescii RKCB132 [PVZD]
2841486
2841411
-
Met
CAT
[ENA]
¡û
>C10103662
CP002164
Bacillota
Caldicellulosiruptor obsidiansis OB47 [CP002164]
1913532
1913457
-
Met
CAT
[Ensembl]
¡û
>C11105201
CP002219
Bacillota
Caldicellulosiruptor hydrothermalis 108 [CP002219]
847452
847527
+
Met
CAT
[Ensembl]
¡û
>C11105380
CP002326
Bacillota
Caldicellulosiruptor acetigenus I77R1B [CP002326]
793693
793768
+
Met
CAT
[Ensembl]
¡û
>C11105426
CP002330
Bacillota
Caldicellulosiruptor kronotskyensis 2002 [CP002330]
862426
862501
+
Met
CAT
[Ensembl]
¡û
>C11105487
CP003001
Bacillota
Caldicellulosiruptor acetigenus 6A [CP003001]
1681825
1681750
-
Met
CAT
[Ensembl]
¡û
>C11105868
CP002216
Bacillota
Caldicellulosiruptor owensensis OL [CP002216]
1766690
1766615
-
Met
CAT
[Ensembl]
¡û
>W11139398
AEKB01000018
Bacillota
Caldicellulosiruptor kronotskyensis 2002 [AEKB]
42374
42299
-
Met
CAT
[ENA]
¡û
>W11139446
AEKC01000060
Bacillota
Caldicellulosiruptor acetigenus 177R1B [AEKC]
595
670
+
Met
CAT
[ENA]
¡û
>W11139459
AEKD01000007
Bacillota
Caldicellulosiruptor acetigenus 6A [AEKD]
8036
8111
+
Met
CAT
[ENA]
¡û
>W1511563961
LACM01000001
Bacillota
Caldicellulosiruptor danielii Wai35.B1 [LACM]
2257177
2257102
-
Met
CAT
[ENA]
¡û
>W1710603734
FUZJ01000001
Bacillota
Caldicellulosiruptor bescii [FUZJ]
1217532
1217607
+
Met
CAT
[ENA]
¡û
>W1710603832
FUZL01000001
Bacillota
Caldicellulosiruptor bescii [FUZL]
1239749
1239674
-
Met
CAT
[ENA]
¡û
>W1710603919
FUZN01000002
Bacillota
Caldicellulosiruptor bescii [FUZN]
2193057
2192982
-
Met
CAT
[ENA]
¡û
>W1710605082
FWDH01000001
Bacillota
Caldicellulosiruptor bescii [FWDH]
1251705
1251630
-
Met
CAT
[ENA]
¡û
>W1710609656
FXXC01000001
Bacillota
Caldicellulosiruptor bescii [FXXC]
1136175
1136250
+
Met
CAT
[ENA]
¡û
>W1710609719
FXXD01000002
Bacillota
Caldicellulosiruptor bescii [FXXD]
2765904
2765829
-
Met
CAT
[ENA]
¡û
>W1710609763
FXXE01000001
Bacillota
Caldicellulosiruptor bescii [FXXE]
2358136
2358061
-
Met
CAT
[ENA]
¡û
>W1710609809
FXXF01000001
Bacillota
Caldicellulosiruptor bescii [FXXF]
2350680
2350605
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK