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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.242961 (102 seq.)
>W1711460330
MJED01000014
Bacillota
Enterococcus gallinarum [MJED]
66617
66691
+
Thr
GGT
[ENA]
¡û
>W1711460412
MJEF01000014
Bacillota
Enterococcus casseliflavus [MJEF]
98342
98414
+
Thr
GGT
[ENA]
¡û
>W1711460492
MJEG01000016
Bacillota
Enterococcus casseliflavus [MJEG]
93286
93358
+
Thr
GGT
[ENA]
¡û
>W1711738474
MUBE01000020
Bacillota
Enterococcus casseliflavus [MUBE]
91607
91679
+
Thr
GGT
[ENA]
¡û
>W1712067179
NGKU01000001
Bacillota
Enterococcus sp. 8G7_MSG3316 [NGKU]
606455
606383
-
Thr
GGT
[ENA]
¡û
>W1712067654
NGLC01000003
Bacillota
Enterococcus sp. 5B3_DIV0040 [NGLC]
3315
3243
-
Thr
GGT
[ENA]
¡û
>W1712067773
NGLF01000001
Bacillota
Enterococcus sp. 4E1_DIV0656 [NGLF]
1683759
1683687
-
Thr
GGT
[ENA]
¡û
>W1712067928
NGLH01000001
Bacillota
Enterococcus sp. 3G6_DIV0642 [NGLH]
664160
664088
-
Thr
GGT
[ENA]
¡û
>W1712067988
NGLJ01000001
Bacillota
Enterococcus sp. 3C8_DIV0646 [NGLJ]
2032474
2032402
-
Thr
GGT
[ENA]
¡û
>W1712068070
NGLK01000001
Bacillota
Enterococcus sp. 3C7_DIV0644 [NGLK]
2578136
2578064
-
Thr
GGT
[ENA]
¡û
>W1712068130
NGLL01000001
Bacillota
Enterococcus sp. 2G9_DIV0600 [NGLL]
2811631
2811703
+
Thr
GGT
[ENA]
¡û
>W1712068229
NGLN01000001
Bacillota
Enterococcus sp. 2F9_DIV0599 [NGLN]
2155497
2155425
-
Thr
GGT
[ENA]
¡û
>W1712069289
NGMG01000001
Bacillota
Enterococcus faecium [NGMG]
3644241
3644169
-
Thr
GGT
[ENA]
¡û
>W1712069694
NGMO01000004
Bacillota
Enterococcus sp. 10A9_DIV0425 [NGMO]
274257
274329
+
Thr
GGT
[ENA]
¡û
>W1712069868
NGMQ01000005
Bacillota
Enterococcus gallinarum [NGMQ]
12157
12083
-
Thr
GGT
[ENA]
¡û
>W1712097074
NIBN01000001
Bacillota
Enterococcus sp. 6D12_DIV0197 [NIBN]
859302
859230
-
Thr
GGT
[ENA]
¡û
>W1712097190
NIBP01000005
Bacillota
Enterococcus sp. 8E11_MSG4843 [NIBP]
72255
72183
-
Thr
GGT
[ENA]
¡û
>W131027613
AJAM01000001
Bacillota
Enterococcus casseliflavus ATCC 49996 [AJAM]
7418
7346
-
Thr
GGT
[ENA]
¡û
>W131027950
AJAT01000007
Bacillota
Enterococcus phoeniculicola ATCC BAA-412 [AJAT]
10671
10599
-
Thr
GGT
[ENA]
¡û
>W131201126
ASVX01000001
Bacillota
Enterococcus casseliflavus ATCC 49996 [ASVX]
632204
632132
-
Thr
GGT
[ENA]
¡û
>W131201590
ASWE01000004
Bacillota
Enterococcus phoeniculicola ATCC BAA-412 [ASWE]
5790
5718
-
Thr
GGT
[ENA]
¡û
>W131202170
ASWO01000005
Bacillota
Enterococcus sulfureus ATCC 49903 [ASWO]
261
333
+
Thr
GGT
[ENA]
¡û
>W131208694
ATIC01000034
Bacillota
Enterococcus casseliflavus 14-MB-W-14 [ATIC]
2839
2767
-
Thr
GGT
[ENA]
¡û
>W131208708
ATID01000004
Bacillota
Enterococcus faecium 13.SD.W.09 [ATID]
20323
20395
+
Thr
GGT
[ENA]
¡û
>W131209111
ATIM01000039
Bacillota
Enterococcus faecalis 06-MB-DW-09 [ATIM]
20662
20734
+
Thr
GGT
[ENA]
¡û
>WENV180153023
OAUR01000228
[OAUR] human gut metagenome; faeces
12344
12416
+
Thr
GGT
[ENA]
¢þ
>WENV180167995
OAVP01002172
[OAVP] human gut metagenome; faeces
249
321
+
Thr
GGT
[ENA]
¢þ
>WENV180305531
OBJO01000413
[OBJO] human gut metagenome; human gut
7088
7014
-
Thr
GGT
[ENA]
¢þ
>WENV180334976
OBLF01114318
[OBLF] metagenome; feces
216
144
-
Thr
GGT
[ENA]
¢þ
>WENV180448565
OBXF01000090
[OBXF] human gut metagenome; faeces
2952
2880
-
Thr
GGT
[ENA]
¢þ
>WENV180453344
OBXM01000042
[OBXM] human gut metagenome; faeces
1226
1152
-
Thr
GGT
[ENA]
¢þ
>WENV180457817
OBXV01000066
[OBXV] human gut metagenome; faeces
152904
152976
+
Thr
GGT
[ENA]
¢þ
>WENV180496950
OCAE01000040
[OCAE] human gut metagenome; faeces
7088
7014
-
Thr
GGT
[ENA]
¢þ
>WENV180503715
OCAN01000017
[OCAN] human gut metagenome; faeces
241393
241465
+
Thr
GGT
[ENA]
¢þ
>W141072091
ASKG01000016
Bacillota
Enterococcus sp. HSIEG1 [ASKG]
7377
7303
-
Thr
GGT
[ENA]
¡û
>WENV180782008
ODIP01012531
[ODIP] human metagenome; G_DNA_Supragingival plaque
953
881
-
Thr
GGT
[ENA]
¢þ
>WENV182539310
OIXV01003346
[OIXV] human gut metagenome; faeces
2877
2805
-
Thr
GGT
[ENA]
¢þ
>WENV182601704
OJJJ01000279
[OJJJ] metagenome; faeces
3028
2956
-
Thr
GGT
[ENA]
¢þ
>WENV182613483
OJKA01000689
[OJKA] metagenome; faeces
10138
10210
+
Thr
GGT
[ENA]
¢þ
>WENV182665052
OJNE01002059
[OJNE] gut metagenome; gut
496
422
-
Thr
GGT
[ENA]
¢þ
>WENV182839758
OKHF01001448
[OKHF] human gut metagenome; human gut
725
651
-
Thr
GGT
[ENA]
¢þ
>WENV182938251
OKVD01001225
[OKVD] human gut metagenome; human gut
6108
6182
+
Thr
GGT
[ENA]
¢þ
>WENV182949809
OKVQ01000200
[OKVQ] human gut metagenome; human gut
27910
27982
+
Thr
GGT
[ENA]
¢þ
>WENV182951802
OKVV01000129
[OKVV] human gut metagenome; human gut
63702
63776
+
Thr
GGT
[ENA]
¢þ
>WENV183511972
OMJG01026856
[OMJG] food metagenome; Cotija cheese
223
295
+
Thr
GGT
[ENA]
¢þ
>WENV170001449
AGFS01048897
[AGFS] ant fungus garden metagenome; Atta colombica fungus garden top
133
61
-
Thr
GGT
[ENA]
¢þ
>WENV170539864
CWGP01000046
[CWGP] human gut metagenome; ENVO:feces
6981
6907
-
Thr
GGT
[ENA]
¢þ
>WENV170541145
CXPK01000241
[CXPK] human gut metagenome genome assembly hA2, contig hA2_contig001157.; ENVO:feces
430
356
-
Thr
GGT
[ENA]
¢þ
>WENV170541583
CXPQ01000884
[CXPQ] human gut metagenome genome assembly hB10, contig; ENVO:feces
677
603
-
Thr
GGT
[ENA]
¢þ
>WENV170542206
CXPZ01000367
[CXPZ] human gut metagenome genome assembly hB5, contig hB5_contig003914.; ENVO:feces
7367
7441
+
Thr
GGT
[ENA]
¢þ
>WENV170542738
CXQH01000609
[CXQH] human gut metagenome genome assembly hC3, contig hC3_contig001864.; ENVO:feces
260
186
-
Thr
GGT
[ENA]
¢þ
>WENV170544490
CXRK01000926
[CXRK] human gut metagenome genome assembly hE7, contig hE7_contig003222.; ENVO:feces
1300
1374
+
Thr
GGT
[ENA]
¢þ
>WENV170545228
CXRX01000825
[CXRX] human gut metagenome genome assembly hG12, contig; ENVO:feces
249
323
+
Thr
GGT
[ENA]
¢þ
>WENV170545789
CXSH01002461
[CXSH] human gut metagenome genome assembly hG8, contig hG8_contig003709.; ENVO:feces
279
205
-
Thr
GGT
[ENA]
¢þ
>WENV170548561
CXUI01002148
[CXUI] Human gut metagenome genome assembly, contig: mD1_contig003205.; ENVO:feces
164
90
-
Thr
GGT
[ENA]
¢þ
>C181083357
CP023515
Bacillota
Enterococcus sp. FDAARGOS_375 [CP023515]
2040926
2040854
-
Thr
GGT
-
¡û
>C181114815
CP025223
Bacillota
Enterococcus sp. CR-Ec1 [CP025223]
714934
714862
-
Thr
GGT
-
¡û
>W09115316
ACAH01000001
Bacillota
Enterococcus casseliflavus EC30 [ACAH]
2810
2738
-
Thr
GGT
[ENA]
¡û
>W09115418
ACAJ01000017
Bacillota
Enterococcus gallinarum EG2 [ACAJ]
6951
6877
-
Thr
GGT
[ENA]
¡û
>W09115491
ACAL01000001
Bacillota
Enterococcus casseliflavus EC10 [ACAL]
2810
2738
-
Thr
GGT
[ENA]
¡û
>W09115638
ACAO01000001
Bacillota
Enterococcus casseliflavus EC20 [ACAO]
3095
3023
-
Thr
GGT
[ENA]
¡û
>C191094120
CP032739
Bacillota
Enterococcus casseliflavus EC-369 [CP032739]
120633
120705
+
Thr
GGT
-
¡û
>C191110806
CP033740
Bacillota
Enterococcus sp. FDAARGOS_553 [CP033740]
1601273
1601199
-
Thr
GGT
-
¡û
>C191177818
CP040461
Bacillota
Enterococcus sp. M190262 [CP040461]
1510708
1510634
-
Thr
GGT
-
¡û
>W141734533
JNLR01000003
Bacillota
Enterococcus gallinarum [JNLR]
2577797
2577871
+
Thr
GGT
[ENA]
¡û
>W1910177235
BJDP01000002
Bacillota
Enterococcus pingfangensis 241-2-2 [BJDP]
9264
9192
-
Thr
GGT
[ENA]
¡û
>W1910177651
BJDX01000009
Bacillota
Enterococcus xiangfangensis 11097 [BJDX]
15466
15538
+
Thr
GGT
[ENA]
¡û
>W1910181724
BJMG01000036
Bacillota
Enterococcus casseliflavus NBRC 12256 [BJMG]
2965
2893
-
Thr
GGT
[ENA]
¡û
>W1910609914
LERZ01000019
Bacillota
Enterococcus gallinarum 298EA1 [LERZ]
294982
295056
+
Thr
GGT
[ENA]
¡û
>W1911238666
NSCY01000009
Bacillota
Enterococcus gallinarum 9402 [NSCY]
5807
5733
-
Thr
GGT
[ENA]
¡û
>W1911710309
QPQX01000023
Bacillota
Enterococcus sp. ARL09-542 [QPQX]
19875
19949
+
Thr
GGT
[ENA]
¡û
>W1810237779
PPHK01000006
Bacillota
Enterococcus gallinarum EG1 [PPHK]
7030
6956
-
Thr
GGT
[ENA]
¡û
>W1810793550
QRJU01000001
Bacillota
Enterococcus casseliflavus AM17-31 [QRJU]
237359
237287
-
Thr
GGT
[ENA]
¡û
>W1810798138
QRMZ01000010
Bacillota
Enterococcus casseliflavus AF48-16 [QRMZ]
130028
130100
+
Thr
GGT
[ENA]
¡û
>W1810907678
QVHY01000002
Bacillota
Enterococcus gallinarum OF05-6AC [QVHY]
201161
201087
-
Thr
GGT
[ENA]
¡û
>C151006878
CP004856
Bacillota
Enterococcus casseliflavus EC20 [CP004856]
674706
674634
-
Thr
GGT
[Ensembl]
¡û
>WENV11101521
AGFS01048897
[AGFS] ant fungus garden metagenome; Atta colombica fungus garden top
133
61
-
Thr
GGT
[ENA]
¡û
>C11114978
AP012200
Bacillota
Melissococcus plutonius ATCC 35311 [AP012200]
901044
900972
-
Thr
GGT
[Ensembl]
¡û
>W1511187739
JMGP01000013
Bacillota
Enterococcus gallinarum A6981 [JMGP]
1404
1330
-
Thr
GGT
[ENA]
¡û
>W1511360961
JSAV01000003
Bacillota
Melissococcus plutonius 764-5B [JSAV]
602787
602715
-
Thr
GGT
[ENA]
¡û
>W1511361030
JSAW01000002
Bacillota
Melissococcus plutonius B5 [JSAW]
603447
603375
-
Thr
GGT
[ENA]
¡û
>W1511361083
JSAY01000003
Bacillota
Melissococcus plutonius 21.1 [JSAY]
602728
602656
-
Thr
GGT
[ENA]
¡û
>W1511361148
JSAZ01000003
Bacillota
Melissococcus plutonius 90 [JSAZ]
142119
142047
-
Thr
GGT
[ENA]
¡û
>W1511361185
JSBA01000002
Bacillota
Melissococcus plutonius 49.3 [JSBA]
601138
601066
-
Thr
GGT
[ENA]
¡û
>W1511361241
JSBB01000003
Bacillota
Melissococcus plutonius 119 [JSBB]
306041
305969
-
Thr
GGT
[ENA]
¡û
>W1511361285
JSBC01000002
Bacillota
Melissococcus plutonius H6 [JSBC]
306019
305947
-
Thr
GGT
[ENA]
¡û
>W11151185
AEWT01000031
Bacillota
Enterococcus casseliflavus ATCC 12755 [AEWT]
357625
357697
+
Thr
GGT
[ENA]
¡û
>C161066336
CP014067
Bacillota
Enterococcus gallinarum FDAARGOS_163 [CP014067]
1768565
1768493
-
Thr
GGT
[Ensembl]
¡û
>W121001848
ADLY01000031
Bacillota
Enterococcus saccharolyticus 30_1 [ADLY]
7687
7613
-
Thr
GGT
[ENA]
¡û
>W1610066495
BCPT01000037
Bacillota
Enterococcus casseliflavus NBRC 100478 [BCPT]
3092
3020
-
Thr
GGT
[ENA]
¡û
>W1610066969
BCQE01000025
Bacillota
Enterococcus gallinarum NBRC 100675 [BCQE]
54841
54915
+
Thr
GGT
[ENA]
¡û
>W121077267
AKCC01000001
Bacillota
Enterococcus casseliflavus EC20 [AKCC]
3121892
3121820
-
Thr
GGT
[ENA]
¡û
>W121086936
AKKS01000003
Bacillota
Enterococcus sp. C1 [AKKS]
2835
2763
-
Thr
GGT
[ENA]
¡û
>W1610620523
LHOX01000022
Bacillota
Enterococcus sp. RIT-PI-f [LHOX]
169080
169152
+
Thr
GGT
[ENA]
¡û
>W1710063833
BCPT01000037
Bacillota
Enterococcus casseliflavus NBRC 100478 [BCPT]
3092
3020
-
Thr
GGT
[ENA]
¡û
>W1710064400
BCQE01000025
Bacillota
Enterococcus gallinarum NBRC 100675 [BCQE]
54841
54915
+
Thr
GGT
[ENA]
¡û
>W1710520617
FNFS01000011
Bacillota
Enterococcus casseliflavus [FNFS]
2908
2836
-
Thr
GGT
[ENA]
¡û
>W1710559409
FOMP01000012
Bacillota
Enterococcus casseliflavus [FOMP]
74892
74964
+
Thr
GGT
[ENA]
¡û
>W1710659268
JXKK01000046
Bacillota
Enterococcus casseliflavus [JXKK]
217
289
+
Thr
GGT
[ENA]
¡û
>W1710659406
JXKP01000021
Bacillota
Enterococcus gallinarum [JXKP]
3519
3445
-
Thr
GGT
[ENA]
¡û
>W1710659700
JXKY01000008
Bacillota
Enterococcus phoeniculicola [JXKY]
5728
5656
-
Thr
GGT
[ENA]
¡û
>W1710748217
LHOX01000022
Bacillota
Enterococcus sp. RIT-PI-f [LHOX]
169080
169152
+
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK