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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.243045 (40 seq.)
>A171000852
CP001696
Euryarchaeota
Methanocaldococcus fervens AG86 [CP001696]
193019
193092
+
Ala
TGC
-
¡û
>A171000873
CP001696
Euryarchaeota
Methanocaldococcus fervens AG86 [CP001696]
1013397
1013324
-
Ala
TGC
-
¡û
>A171001007
CP001787
Euryarchaeota
Methanocaldococcus vulcanius M7 [CP001787]
623683
623756
+
Ala
TGC
-
¡û
>A171001029
CP001787
Euryarchaeota
Methanocaldococcus vulcanius M7 [CP001787]
1573296
1573223
-
Ala
TGC
-
¡û
>A171001252
CP001901
Euryarchaeota
Methanocaldococcus sp. FS406-22 [CP001901]
101345
101418
+
Ala
TGC
-
¡û
>A171001275
CP001901
Euryarchaeota
Methanocaldococcus sp. FS406-22 [CP001901]
1434904
1434831
-
Ala
TGC
-
¡û
>A171001478
CP002009
Euryarchaeota
Methanocaldococcus infernus ME [CP002009]
900442
900515
+
Ala
TGC
-
¡û
>A171001494
CP002009
Euryarchaeota
Methanocaldococcus infernus ME [CP002009]
1153848
1153775
-
Ala
TGC
-
¡û
>A171004481
CP009149
Euryarchaeota
Methanocaldococcus bathoardescens JH146 [CP009149]
1604220
1604293
+
Ala
TGC
-
¡û
>A171004500
CP009149
Euryarchaeota
Methanocaldococcus bathoardescens JH146 [CP009149]
1174819
1174746
-
Ala
TGC
-
¡û
>WENV180275437
OBHT01030769
[OBHT] metagenome; hydrothermal vent
179
252
+
Ala
TGC
[ENA]
¢þ
>WENV180287720
OBIL01000994
[OBIL] metagenome; hydrothermal vent
676
749
+
Ala
TGC
[ENA]
¢þ
>WENV180332350
OBLD01000461
[OBLD] metagenome; water
1898
1971
+
Ala
TGC
[ENA]
¢þ
>WENV180582149
OCMO01004393
[OCMO] metagenome; diffuse fluid
135
62
-
Ala
TGC
[ENA]
¢þ
>WENV181206649
OFAW01000882
[OFAW] metagenome; hydrothermal vent
1456
1383
-
Ala
TGC
[ENA]
¢þ
>WENV181207128
OFAY01001198
[OFAY] metagenome; hydrothermal vent
1835
1908
+
Ala
TGC
[ENA]
¢þ
>WENV181207531
OFAZ01001858
[OFAZ] metagenome; hydrothermal vent
841
768
-
Ala
TGC
[ENA]
¢þ
>WENV181207963
OFBA01005040
[OFBA] metagenome; hydrothermal vent
299
372
+
Ala
TGC
[ENA]
¢þ
>WENV181208288
OFBB01002623
[OFBB] metagenome; hydrothermal vent
1144
1071
-
Ala
TGC
[ENA]
¢þ
>WENV181208722
OFBC01002689
[OFBC] metagenome; hydrothermal vent
985
912
-
Ala
TGC
[ENA]
¢þ
>WENV181212786
OFBU01000081
[OFBU] metagenome; hydrothermal vent
7438
7365
-
Ala
TGC
[ENA]
¢þ
>WENV181213309
OFBV01000333
[OFBV] metagenome; hydrothermal vent
5531
5458
-
Ala
TGC
[ENA]
¢þ
>WENV181214307
OFBX01001658
[OFBX] metagenome; hydrothermal vent
280
207
-
Ala
TGC
[ENA]
¢þ
>WENV181214443
OFBY01000219
[OFBY] metagenome; hydrothermal vent
4006
4079
+
Ala
TGC
[ENA]
¢þ
>WENV181214982
OFBZ01000517
[OFBZ] metagenome; hydrothermal vent
3507
3434
-
Ala
TGC
[ENA]
¢þ
>WENV181215457
OFCA01000464
[OFCA] metagenome; hydrothermal vent
4077
4150
+
Ala
TGC
[ENA]
¢þ
>WENV181216058
OFCB01002333
[OFCB] metagenome; hydrothermal vent
943
1016
+
Ala
TGC
[ENA]
¢þ
>WENV181216588
OFCC01005475
[OFCC] metagenome; hydrothermal vent
790
717
-
Ala
TGC
[ENA]
¢þ
>WENV181223930
OFDD01003780
[OFDD] metagenome; hydrothermal vent
547
620
+
Ala
TGC
[ENA]
¢þ
>WENV181224768
OFDG01003731
[OFDG] metagenome; hydrothermal vent
773
700
-
Ala
TGC
[ENA]
¢þ
>WENV181225449
OFDI01001826
[OFDI] metagenome; hydrothermal vent
279
352
+
Ala
TGC
[ENA]
¢þ
>At0934
L77117
Euryarchaeota
Methanocaldococcus jannaschii DSM 2661 [L77117]
639995
640067
+
Ala
TGC
[Ensembl]
¡û
>At0949
L77117
Euryarchaeota
Methanocaldococcus jannaschii DSM 2661 [L77117]
157919
157847
-
Ala
TGC
[Ensembl]
¡û
>W1610001130
ACQW01000026
Euryarchaeota
Methanocaldococcus fervens AG86 [ACQW]
3224
3149
-
Ala
TGC
[ENA]
¡û
>W1610001163
ACQY01000036
Euryarchaeota
Methanocaldococcus infernus ME [ACQY]
1692
1765
+
Ala
TGC
[ENA]
¡û
>W1610001548
ACUW01000001
Euryarchaeota
Methanocaldococcus vulcanius M7 [ACUW]
646200
646275
+
Ala
TGC
[ENA]
¡û
>W1610001653
ADCA01000023
Euryarchaeota
Methanocaldococcus sp. FS406-22 [ADCA] FS406-22 [ADCA]
3224
3149
-
Ala
TGC
[ENA]
¡û
>W1610018108
APMM01000060
Euryarchaeota
Methanocaldococcus villosus KIN24-T80 [APMM]
1754
1829
+
Ala
TGC
[ENA]
¡û
>W1610018629
AQUK01000001
Euryarchaeota
Methanocaldococcus villosus KIN24-T80 [AQUK]
275626
275701
+
Ala
TGC
[ENA]
¡û
>W1610018650
AQUK01000001
Euryarchaeota
Methanocaldococcus villosus KIN24-T80 [AQUK]
681780
681705
-
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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