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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.243046 (30 seq.)
>A171000862
CP001696
Euryarchaeota
Methanocaldococcus fervens AG86 [CP001696]
876151
876226
+
Gln
TTG
-
¡û
>A171001036
CP001787
Euryarchaeota
Methanocaldococcus vulcanius M7 [CP001787]
144791
144716
-
Gln
TTG
-
¡û
>A171001276
CP001901
Euryarchaeota
Methanocaldococcus sp. FS406-22 [CP001901]
1307133
1307058
-
Gln
TTG
-
¡û
>A171001498
CP002009
Euryarchaeota
Methanocaldococcus infernus ME [CP002009]
922981
922906
-
Gln
TTG
-
¡û
>A171002212
CP002737
Euryarchaeota
Methanotorris igneus Kol 5 [CP002737]
1164910
1164985
+
Gln
TTG
-
¡û
>A171004501
CP009149
Euryarchaeota
Methanocaldococcus bathoardescens JH146 [CP009149]
1063798
1063723
-
Gln
TTG
-
¡û
>WENV180287231
OBIK01003999
[OBIK] hydrothermal vent metagenome; sea water
783
858
+
Gln
TTG
[ENA]
¢þ
>WENV180287727
OBIL01001118
[OBIL] metagenome; hydrothermal vent
1073
998
-
Gln
TTG
[ENA]
¢þ
>WENV180317294
OBKJ01102534
[OBKJ] metagenome; hydrothermal vent
137
212
+
Gln
TTG
[ENA]
¢þ
>WENV180332439
OBLD01008477
[OBLD] metagenome; water
190
265
+
Gln
TTG
[ENA]
¢þ
>WENV180582346
OCMO01063279
[OCMO] metagenome; diffuse fluid
161
86
-
Gln
TTG
[ENA]
¢þ
>WENV181206795
OFAW01007664
[OFAW] metagenome; hydrothermal vent
276
351
+
Gln
TTG
[ENA]
¢þ
>WENV181208445
OFBB01013407
[OFBB] metagenome; hydrothermal vent
445
370
-
Gln
TTG
[ENA]
¢þ
>WENV181212878
OFBU01000728
[OFBU] metagenome; hydrothermal vent
2263
2338
+
Gln
TTG
[ENA]
¢þ
>WENV181213510
OFBV01005955
[OFBV] metagenome; hydrothermal vent
304
379
+
Gln
TTG
[ENA]
¢þ
>WENV181213918
OFBW01002391
[OFBW] metagenome; hydrothermal vent
304
229
-
Gln
TTG
[ENA]
¢þ
>WENV181214803
OFBY01016796
[OFBY] metagenome; hydrothermal vent
383
308
-
Gln
TTG
[ENA]
¢þ
>WENV181215158
OFBZ01005583
[OFBZ] metagenome; hydrothermal vent
574
499
-
Gln
TTG
[ENA]
¢þ
>WENV181215525
OFCA01001658
[OFCA] metagenome; hydrothermal vent
1297
1372
+
Gln
TTG
[ENA]
¢þ
>WENV181224540
OFDF01007708
[OFDF] metagenome; hydrothermal vent
1
76
+
Gln
TTG
[ENA]
¢þ
>WENV181225578
OFDI01010221
[OFDI] metagenome; hydrothermal vent
11
86
+
Gln
TTG
[ENA]
¢þ
>At0935
L77117
Euryarchaeota
Methanocaldococcus jannaschii DSM 2661 [L77117]
764021
764096
+
Gln
TTG
[Ensembl]
¡û
>W1910067433
BFAX01000003
Euryarchaeota
Methanofervidicoccus abyssi HHB [BFAX]
364023
363948
-
Gln
TTG
[ENA]
¡û
>W1610001126
ACQW01000017
Euryarchaeota
Methanocaldococcus fervens AG86 [ACQW]
17389
17464
+
Gln
TTG
[ENA]
¡û
>W1610001160
ACQY01000020
Euryarchaeota
Methanocaldococcus infernus ME [ACQY]
11587
11512
-
Gln
TTG
[ENA]
¡û
>W1610001533
ACUW01000001
Euryarchaeota
Methanocaldococcus vulcanius M7 [ACUW]
328377
328453
+
Gln
TTG
[ENA]
¡û
>W1610001650
ADCA01000008
Euryarchaeota
Methanocaldococcus sp. FS406-22 [ADCA] FS406-22 [ADCA]
35879
35954
+
Gln
TTG
[ENA]
¡û
>W1610004302
AGJL01000075
Euryarchaeota
Methanotorris formicicus Mc-S-70 [AGJL]
513
588
+
Gln
TTG
[ENA]
¡û
>W1610018107
APMM01000052
Euryarchaeota
Methanocaldococcus villosus KIN24-T80 [APMM]
95
170
+
Gln
TTG
[ENA]
¡û
>W1610018643
AQUK01000001
Euryarchaeota
Methanocaldococcus villosus KIN24-T80 [AQUK]
1147638
1147563
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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