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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.244297 (115 seq.)
>W1710926756
LOEL01000027
Bacteroidota
Porphyromonas gingivalis [LOEL]
674
749
+
Lys
CTT
[ENA]
¡û
>W1711124173
LUJT01000113
Bacteroidota
Bacteroidales bacterium M9 [LUJT]
5635
5560
-
Lys
CTT
[ENA]
¡û
>W131111455
APMB01000271
Bacteroidota
Porphyromonas gingivalis JCVI SC001 [APMB]
491
566
+
Lys
CTT
[ENA]
¡û
>W131175813
ARJN01000065
Bacteroidota
Porphyromonas gulae DSM 15663 [ARJN]
42657
42732
+
Lys
CTT
[ENA]
¡û
>W1711501510
MKRS01000300
Bacteroidota
Bacteroidales bacterium 45-6 [MKRS]
6741
6814
+
Lys
CTT
[ENA]
¡û
>W1712084884
NHRU01000011
Bacteroidota
Porphyromonas gingivalis [NHRU]
30309
30234
-
Lys
CTT
[ENA]
¡û
>C016381
AE015924
Bacteroidota
Porphyromonas gingivalis W83 [AE015924]
2154390
2154315
-
Lys
CTT
[Ensembl]
¡û
>WENV180003980
FLRQ01000520
[FLRQ] metagenome; saliva
161
234
+
Lys
CTT
[ENA]
¢þ
>WENV180006913
FLRZ01020931
[FLRZ] metagenome; saliva
677
604
-
Lys
CTT
[ENA]
¢þ
>WENV180007487
FLSA01038034
[FLSA] metagenome; saliva
54
127
+
Lys
CTT
[ENA]
¢þ
>WENV180010893
FLSI01003181
[FLSI] metagenome; saliva
115
188
+
Lys
CTT
[ENA]
¢þ
>WENV180551615
OCJG01002996
[OCJG] human oral metagenome; human oral
807
732
-
Lys
CTT
[ENA]
¢þ
>WENV180731677
ODGW01006193
[ODGW] human metagenome; G_DNA_Supragingival plaque
218
291
+
Lys
CTT
[ENA]
¢þ
>W141074438
ASYL01000081
Bacteroidota
Porphyromonas gingivalis SJD2 [ASYL]
354
429
+
Lys
CTT
[ENA]
¡û
>WENV180777794
ODIL01107378
[ODIL] human metagenome; G_DNA_Supragingival plaque
130
57
-
Lys
CTT
[ENA]
¢þ
>WENV180782644
ODIQ01000091
[ODIQ] human metagenome; G_DNA_Tongue dorsum
480
555
+
Lys
CTT
[ENA]
¢þ
>WENV180782645
ODIQ01000091
[ODIQ] human metagenome; G_DNA_Tongue dorsum
59665
59740
+
Lys
CTT
[ENA]
¢þ
>WENV180830369
ODKB01002272
[ODKB] human metagenome; G_DNA_Tongue dorsum
92
167
+
Lys
CTT
[ENA]
¢þ
>WENV180830395
ODKB01002615
[ODKB] human metagenome; G_DNA_Tongue dorsum
6039
5964
-
Lys
CTT
[ENA]
¢þ
>WENV181237461
OFFB01000281
[OFFB] mouse gut metagenome; faeces
49437
49510
+
Lys
CTT
[ENA]
¢þ
>WENV181238378
OFFC01000200
[OFFC] mouse gut metagenome; faeces
4681
4608
-
Lys
CTT
[ENA]
¢þ
>WENV181248878
OFFM01000144
[OFFM] mouse gut metagenome; faeces
66001
66074
+
Lys
CTT
[ENA]
¢þ
>WENV181249914
OFFN01000248
[OFFN] mouse gut metagenome; faeces
4935
4862
-
Lys
CTT
[ENA]
¢þ
>WENV181266843
OFGC01000303
[OFGC] mouse gut metagenome; faeces
4681
4608
-
Lys
CTT
[ENA]
¢þ
>WENV181275176
OFGJ01000231
[OFGJ] mouse gut metagenome; faeces
4998
4925
-
Lys
CTT
[ENA]
¢þ
>W141145635
AWUU01000073
Bacteroidota
Porphyromonas gingivalis F0568 [AWUU]
24200
24125
-
Lys
CTT
[ENA]
¡û
>W141145669
AWUV01000057
Bacteroidota
Porphyromonas gingivalis F0569 [AWUV]
42182
42257
+
Lys
CTT
[ENA]
¡û
>W141145733
AWUW01000130
Bacteroidota
Porphyromonas gingivalis F0570 [AWUW]
11592
11517
-
Lys
CTT
[ENA]
¡û
>W141145954
AWVC01000083
Bacteroidota
Porphyromonas gingivalis F0185 [AWVC]
31053
31128
+
Lys
CTT
[ENA]
¡û
>W141146001
AWVD01000110
Bacteroidota
Porphyromonas gingivalis F0566 [AWVD]
40179
40254
+
Lys
CTT
[ENA]
¡û
>W141146041
AWVE01000073
Bacteroidota
Porphyromonas gingivalis W4087 [AWVE]
11519
11444
-
Lys
CTT
[ENA]
¡û
>WENV182004661
OHBE01000288
[OHBE] human gut metagenome; faeces
31061
31134
+
Lys
CTT
[ENA]
¢þ
>C08007293
AP009380
Bacteroidota
Porphyromonas gingivalis ATCC 33277 [AP009380]
2238752
2238677
-
Lys
CTT
[Ensembl]
¡û
>WENV183507906
OMGZ01000249
[OMGZ] human oral metagenome; human oral
928
855
-
Lys
CTT
[ENA]
¢þ
>WENV183507993
OMHA01000685
[OMHA] human oral metagenome; human oral
863
936
+
Lys
CTT
[ENA]
¢þ
>WENV183510904
OMHT01000219
[OMHT] human oral metagenome; human oral
2696
2623
-
Lys
CTT
[ENA]
¢þ
>WENV183705594
PDWI01001896
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
19715
19642
-
Lys
CTT
[ENA]
¢þ
>WENV183705595
PDWI01001896
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
19585
19510
-
Lys
CTT
[ENA]
¢þ
>WENV183706482
PDWI01004410
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
5987
5914
-
Lys
CTT
[ENA]
¢þ
>WENV183706824
PDWI01005632
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
15945
15872
-
Lys
CTT
[ENA]
¢þ
>WENV183707217
PDWI01007346
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
98
25
-
Lys
CTT
[ENA]
¢þ
>WENV183707541
PDWI01008930
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
11514
11441
-
Lys
CTT
[ENA]
¢þ
>WENV183707561
PDWI01009029
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
11473
11546
+
Lys
CTT
[ENA]
¢þ
>WENV183708276
PDWI01014351
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
890
963
+
Lys
CTT
[ENA]
¢þ
>WENV183708277
PDWI01014351
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
980
1053
+
Lys
CTT
[ENA]
¢þ
>WENV183715580
PDWI01248295
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1030
957
-
Lys
CTT
[ENA]
¢þ
>C181102084
CP024591
Bacteroidota
Porphyromonas gingivalis KCOM 2802 [CP024591]
1450782
1450855
+
Lys
CTT
-
¡û
>C181102112
CP024592
Bacteroidota
Porphyromonas gingivalis KCOM 2803 [CP024592]
65354
65427
+
Lys
CTT
-
¡û
>C181102172
CP024593
Bacteroidota
Porphyromonas gingivalis KCOM 2804 [CP024593]
1389506
1389579
+
Lys
CTT
-
¡û
>C181102213
CP024594
Bacteroidota
Porphyromonas gingivalis KCOM 2805 [CP024594]
306762
306835
+
Lys
CTT
-
¡û
>C181102287
CP024595
Bacteroidota
Porphyromonas gingivalis KCOM 3001 [CP024595]
2224247
2224320
+
Lys
CTT
-
¡û
>C181102347
CP024596
Bacteroidota
Porphyromonas gingivalis KCOM 3131 [CP024596]
990988
990915
-
Lys
CTT
-
¡û
>C181102397
CP024597
Bacteroidota
Porphyromonas gingivalis KCOM 2796 [CP024597]
802715
802642
-
Lys
CTT
-
¡û
>C181102424
CP024598
Bacteroidota
Porphyromonas gingivalis KCOM 2798 [CP024598]
1098492
1098565
+
Lys
CTT
-
¡û
>C181102475
CP024599
Bacteroidota
Porphyromonas gingivalis KCOM 2800 [CP024599]
1203644
1203717
+
Lys
CTT
-
¡û
>C181102548
CP024600
Bacteroidota
Porphyromonas gingivalis KCOM 2801 [CP024600]
372611
372538
-
Lys
CTT
-
¡û
>C181102588
CP024601
Bacteroidota
Porphyromonas gingivalis KCOM 2799 [CP024601]
1529105
1529032
-
Lys
CTT
-
¡û
>C181123597
CP025930
Bacteroidota
Porphyromonas gingivalis ATCC 33277 [CP025930]
2263740
2263667
-
Lys
CTT
-
¡û
>C181123649
CP025931
Bacteroidota
Porphyromonas gingivalis TDC 60 [CP025931]
2219993
2219920
-
Lys
CTT
-
¡û
>C181123703
CP025932
Bacteroidota
Porphyromonas gingivalis W83 [CP025932]
2154913
2154840
-
Lys
CTT
-
¡û
>W1910371017
FUFB01000023
Bacteroidota
Porphyromonas gingivalis 3_3 [FUFB]
56352
56425
+
Lys
CTT
[ENA]
¡û
>W1910371069
FUFC01000021
Bacteroidota
Porphyromonas gingivalis 3A1 [FUFC]
40360
40433
+
Lys
CTT
[ENA]
¡û
>W1910371113
FUFD01000045
Bacteroidota
Porphyromonas gingivalis 7BTORR [FUFD]
27461
27388
-
Lys
CTT
[ENA]
¡û
>W1910371131
FUFE01000005
Bacteroidota
Porphyromonas gingivalis 11A [FUFE]
434
507
+
Lys
CTT
[ENA]
¡û
>W1910371213
FUFF01000020
Bacteroidota
Porphyromonas gingivalis A7A1_28 [FUFF]
54244
54317
+
Lys
CTT
[ENA]
¡û
>W1910371215
FUFG01000001
Bacteroidota
Porphyromonas gingivalis 84_3 [FUFG]
40786
40859
+
Lys
CTT
[ENA]
¡û
>W1910371287
FUFH01000048
Bacteroidota
Porphyromonas gingivalis ATCC 49417 [FUFH]
529
602
+
Lys
CTT
[ENA]
¡û
>W1910371301
FUFI01000001
Bacteroidota
Porphyromonas gingivalis SU60 [FUFI]
759
832
+
Lys
CTT
[ENA]
¡û
>W1910371353
FUFJ01000027
Bacteroidota
Porphyromonas gingivalis AFR5B1 [FUFJ]
433
506
+
Lys
CTT
[ENA]
¡û
>W1910372556
FUGF01000018
Bacteroidota
Porphyromonas gingivalis 15_9 [FUGF]
446
519
+
Lys
CTT
[ENA]
¡û
>W1910372594
FUGG01000002
Bacteroidota
Porphyromonas gingivalis 13_1 [FUGG]
439
512
+
Lys
CTT
[ENA]
¡û
>W1911247388
NSLL01000022
Bacteroidota
Porphyromonas gingivalis WW5127 [NSLL]
797
870
+
Lys
CTT
[ENA]
¡û
>W1911247434
NSLM01000020
Bacteroidota
Porphyromonas gingivalis WW5019 [NSLM]
31172
31245
+
Lys
CTT
[ENA]
¡û
>W1911247480
NSLN01000064
Bacteroidota
Porphyromonas gingivalis WW3039 [NSLN]
1409
1482
+
Lys
CTT
[ENA]
¡û
>W1911247496
NSLO01000007
Bacteroidota
Porphyromonas gingivalis WW3102 [NSLO]
56741
56814
+
Lys
CTT
[ENA]
¡û
>W1911247553
NSLP01000029
Bacteroidota
Porphyromonas gingivalis WW3040 [NSLP]
28738
28665
-
Lys
CTT
[ENA]
¡û
>W1911247603
NSLQ01000031
Bacteroidota
Porphyromonas gingivalis WW2952 [NSLQ]
850
923
+
Lys
CTT
[ENA]
¡û
>W1911247650
NSLR01000048
Bacteroidota
Porphyromonas gingivalis WW2931 [NSLR]
14369
14296
-
Lys
CTT
[ENA]
¡û
>W1911247694
NSLS01000027
Bacteroidota
Porphyromonas gingivalis WW2903 [NSLS]
29686
29613
-
Lys
CTT
[ENA]
¡û
>W1911247710
NSLT01000003
Bacteroidota
Porphyromonas gingivalis WW2885 [NSLT]
30452
30379
-
Lys
CTT
[ENA]
¡û
>W1911247783
NSLU01000148
Bacteroidota
Porphyromonas gingivalis WW2881 [NSLU]
1204
1131
-
Lys
CTT
[ENA]
¡û
>W1911247814
NSLV01000026
Bacteroidota
Porphyromonas gingivalis WW2866 [NSLV]
1487
1560
+
Lys
CTT
[ENA]
¡û
>W1911247846
NSLW01000005
Bacteroidota
Porphyromonas gingivalis WW2842 [NSLW]
75754
75681
-
Lys
CTT
[ENA]
¡û
>W1911247899
NSLX01000023
Bacteroidota
Porphyromonas gingivalis WW2096 [NSLX]
12131
12058
-
Lys
CTT
[ENA]
¡û
>W1911709132
QPGS01000024
Bacteroidota
Porphyromonas gingivalis 381OKJP [QPGS]
34496
34423
-
Lys
CTT
[ENA]
¡û
>W1810573705
QEKY01000001
Bacteroidota
Porphyromonas loveana DSM 28520 [QEKY]
14266
14339
+
Lys
CTT
[ENA]
¡û
>C151089051
CP011995
Bacteroidota
Porphyromonas gingivalis A7436 [CP011995]
2176687
2176612
-
Lys
CTT
-
¡û
>C151089099
CP011996
Bacteroidota
Porphyromonas gingivalis AJW4 [CP011996]
2179709
2179634
-
Lys
CTT
-
¡û
>C11117335
AP012203
Bacteroidota
Porphyromonas gingivalis TDC60 [AP012203]
349135
349060
-
Lys
CTT
[Ensembl]
¡û
>W1511328341
JQJE01000003
Bacteroidota
Porphyromonas gulae OH3161B [JQJE]
43009
43084
+
Lys
CTT
[ENA]
¡û
>W1511336111
JQZY01000002
Bacteroidota
Porphyromonas sp. COT-052 OH4946 [JQZY]
155363
155438
+
Lys
CTT
[ENA]
¡û
>W1511336354
JRAE01000023
Bacteroidota
Porphyromonas gulae COT-052_OH2199 [JRAE]
19379
19454
+
Lys
CTT
[ENA]
¡û
>W1511336393
JRAF01000012
Bacteroidota
Porphyromonas gulae COT-052 OH3498 [JRAF]
82852
82777
-
Lys
CTT
[ENA]
¡û
>W1511336459
JRAG01000032
Bacteroidota
Porphyromonas gulae COT-052 OH1355 [JRAG]
42026
42101
+
Lys
CTT
[ENA]
¡û
>W1511336560
JRAI01000082
Bacteroidota
Porphyromonas gulae COT-052 OH1451 [JRAI]
14717
14642
-
Lys
CTT
[ENA]
¡û
>W1511336570
JRAJ01000002
Bacteroidota
Porphyromonas gulae COT-052 OH2179 [JRAJ]
411449
411374
-
Lys
CTT
[ENA]
¡û
>W1511336621
JRAK01000068
Bacteroidota
Porphyromonas gulae COT-052 OH3439 [JRAK]
10416
10341
-
Lys
CTT
[ENA]
¡û
>W1511336648
JRAL01000003
Bacteroidota
Porphyromonas gulae COT-052 OH4119 [JRAL]
116611
116686
+
Lys
CTT
[ENA]
¡û
>W1511336746
JRAO01000027
Bacteroidota
Porphyromonas sp. COT-239 OH1446 [JRAO]
59104
59177
+
Lys
CTT
[ENA]
¡û
>W1511336747
JRAO01000027
Bacteroidota
Porphyromonas sp. COT-239 OH1446 [JRAO]
59225
59298
+
Lys
CTT
[ENA]
¡û
>W1511336851
JRAQ01000043
Bacteroidota
Porphyromonas gulae COT-052 OH3471 [JRAQ]
42193
42268
+
Lys
CTT
[ENA]
¡û
>W1511336936
JRAT01000012
Bacteroidota
Porphyromonas gulae COT-052 OH3856 [JRAT]
191358
191433
+
Lys
CTT
[ENA]
¡û
>W1511343914
JRFD01000013
Bacteroidota
Porphyromonas gulae COT-052 OH2857 [JRFD]
45077
45152
+
Lys
CTT
[ENA]
¡û
>C161018170
CP007756
Bacteroidota
Porphyromonas gingivalis HG66 [CP007756]
376895
376820
-
Lys
CTT
[Ensembl]
¡û
>C161046938
CP012889
Bacteroidota
Porphyromonas gingivalis 381 [CP012889]
2262738
2262663
-
Lys
CTT
-
¡û
>C161051785
CP013131
Bacteroidota
Porphyromonas gingivalis A7A1-28 [CP013131]
2134837
2134762
-
Lys
CTT
-
¡û
>W121073564
AJZS01000061
Bacteroidota
Porphyromonas gingivalis W50 [AJZS]
31048
30973
-
Lys
CTT
[ENA]
¡û
>W1610060518
BCBV01000004
Bacteroidota
Porphyromonas gingivalis [BCBV]
54931
54856
-
Lys
CTT
[ENA]
¡û
>W1610784249
LOEL01000027
Bacteroidota
Porphyromonas gingivalis [LOEL]
674
749
+
Lys
CTT
[ENA]
¡û
>W1610935212
LUJT01000113
Bacteroidota
Bacteroidales bacterium M9 [LUJT]
5635
5560
-
Lys
CTT
[ENA]
¡û
>W1710017887
ASYM01000074
Bacteroidota
Porphyromonas gingivalis SJD4 [ASYM]
34766
34691
-
Lys
CTT
[ENA]
¡û
>W1710017920
ASYN01000090
Bacteroidota
Porphyromonas gingivalis SJD5 [ASYN]
29004
28929
-
Lys
CTT
[ENA]
¡û
>W1710017989
ASYO01000104
Bacteroidota
Porphyromonas gingivalis SJD11 [ASYO]
30470
30395
-
Lys
CTT
[ENA]
¡û
>W1710018005
ASYP01000042
Bacteroidota
Porphyromonas gingivalis SJD12 [ASYP]
575
500
-
Lys
CTT
[ENA]
¡û
>W1710057773
BCBV01000004
Bacteroidota
Porphyromonas gingivalis [BCBV]
54931
54856
-
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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