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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.251608 (40 seq.)
>W1710943641
LOPX01000014
Gammaproteobacteria
Guyparkeria sp. XI15 XI15 [LOPX]
311294
311369
+
Phe
GAA
[ENA]
¡û
>W1711029597
LRFH01000014
Gammaproteobacteria
Guyparkeria sp. WRN-7 WRN-7 [LRFH]
311294
311369
+
Phe
GAA
[ENA]
¡û
>W131215596
ATVD01000002
Gammaproteobacteria
Arenimonas oryziterrae DSM 21050 [ATVD]
578496
578421
-
Phe
GAA
[ENA]
¡û
>W131222268
AUBD01000001
Gammaproteobacteria
Silanimonas lenta DSM 16282 [AUBD]
519606
519681
+
Phe
GAA
[ENA]
¡û
>W131163174
AQZO01000005
Gammaproteobacteria
Thioalkalivibrio thiocyanodenitrificans ARhD 1 [AQZO]
1658050
1657975
-
Phe
GAA
[ENA]
¡û
>WENV180043270
LQAH01019091
[LQAH] bioreactor metagenome; bioreactor_4 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
477
552
+
Phe
GAA
[ENA]
¢þ
>WENV180270484
OBEQ012176757
[OBEQ] groundwater metagenome; groundwater
1697
1622
-
Phe
GAA
[ENA]
¢þ
>WENV180296994
OBJA01007128
[OBJA] soil metagenome; sediment, water from around vicinity
238
313
+
Phe
GAA
[ENA]
¢þ
>WENV180346682
OBLN01222978
[OBLN] sediment metagenome; sediment
6
81
+
Phe
GAA
[ENA]
¢þ
>W141094241
AVCI01000001
Gammaproteobacteria
Arenimonas oryziterrae DSM 21050 = YC6267 [AVCI]
578448
578373
-
Phe
GAA
[ENA]
¡û
>WENV181171967
OEIV010427123
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
190
115
-
Phe
GAA
[ENA]
¢þ
>WENV181412440
OGCK01000313
[OGCK] hot springs metagenome; hot spring sediment
1880
1955
+
Phe
GAA
[ENA]
¢þ
>WENV181412556
OGCK01001498
[OGCK] hot springs metagenome; hot spring sediment
366
291
-
Phe
GAA
[ENA]
¢þ
>WENV183093436
OLMB01000215
[OLMB] soil metagenome; soil
79
4
-
Phe
GAA
[ENA]
¢þ
>WENV183512651
OMKS01000983
[OMKS] sediment metagenome; hot spring sediment
6762
6687
-
Phe
GAA
[ENA]
¢þ
>WENV183665465
ORJL010464890
[ORJL] groundwater metagenome; groundwater
226
301
+
Phe
GAA
[ENA]
¢þ
>WENV170012357
APMI01159892
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
867
792
-
Phe
GAA
[ENA]
¢þ
>WENV170018699
BBPD01000417
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
77
2
-
Phe
GAA
[ENA]
¢þ
>WENV170019904
BBPE01001338
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
10203
10278
+
Phe
GAA
[ENA]
¢þ
>WENV170361954
CETM01037278
[CETM] marine metagenome genome assembly TARA_122_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
17813
17738
-
Phe
GAA
[ENA]
¢þ
>WENV170372540
CETS01108451
[CETS] marine metagenome genome assembly TARA_122_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
265
190
-
Phe
GAA
[ENA]
¢þ
>WENV170658310
JTFP01084531
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
174
99
-
Phe
GAA
[ENA]
¢þ
>WENV170680301
LFCJ01007564
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
2021
1946
-
Phe
GAA
[ENA]
¢þ
>WENV170702469
LKMJ01002127
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
11088
11163
+
Phe
GAA
[ENA]
¢þ
>C181160745
CP027860
Gammaproteobacteria
Ahniella affigens D13 [CP027860]
3304753
3304828
+
Phe
GAA
-
¡û
>W1910749869
MJEV01000074
Gammaproteobacteria
Pseudofulvimonas gallinarii DSM 21944 [MJEV]
23269
23344
+
Phe
GAA
[ENA]
¡û
>W1911162553
NPZB01000002
Gammaproteobacteria
Lysobacter silvestris AM20-91 [NPZB]
373793
373718
-
Phe
GAA
[ENA]
¡û
>W1911817791
QZMT01000016
Gammaproteobacteria
Guyparkeria sp. SCN-R1 [QZMT]
28016
27941
-
Phe
GAA
[ENA]
¡û
>W1810608677
QGTM01000033
Gammaproteobacteria
Halomonas sp. A11-A [QGTM]
203
278
+
Phe
GAA
[ENA]
¡û
>W1810696006
QLSX01000018
Gammaproteobacteria
Halomonas taeanensis USBA-857 [QLSX]
20891
20966
+
Phe
GAA
[ENA]
¡û
>W1810760187
QPJY01000005
Gammaproteobacteria
Thioalbus denitrificans DSM 26407 [QPJY]
148867
148792
-
Phe
GAA
[ENA]
¡û
>C151016153
CP007029
Gammaproteobacteria
Thioalkalivibrio paradoxus ARh 1 [CP007029]
318275
318350
+
Phe
GAA
[Ensembl]
¡û
>W11178567
AGFB01000001
Gammaproteobacteria
Thioalkalivibrio thiocyanoxidans ARh 4 [AGFB]
566360
566285
-
Phe
GAA
[ENA]
¡û
>C161005778
CP007268
Gammaproteobacteria
Ectothiorhodospira haloalkaliphila A [CP007268]
3117868
3117793
-
Phe
GAA
-
¡û
>C161093418
CP016027
Gammaproteobacteria
Halothiobacillus sp. LS2 [CP016027]
1739105
1739030
-
Phe
GAA
[Ensembl]
¡û
>C131010932
CP003989
Gammaproteobacteria
Thioalkalivibrio nitratireducens DSM 14787 [CP003989]
3729717
3729642
-
Phe
GAA
[Ensembl]
¡û
>W1610799941
LOPX01000014
Gammaproteobacteria
Guyparkeria sp. XI15 XI15 [LOPX]
311294
311369
+
Phe
GAA
[ENA]
¡û
>W1610877865
LRFH01000014
Gammaproteobacteria
Guyparkeria sp. WRN-7 WRN-7 [LRFH]
311294
311369
+
Phe
GAA
[ENA]
¡û
>WENV079787
AATN01000719
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
2579
2656
+
Phe
GAA
[ENA]
>W1710607986
FXAM01000001
Gammaproteobacteria
Methylomagnum ishizawai 175 [FXAM]
2821240
2821315
+
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK