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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.254287 (23 seq.)
>W1711081281
LSSA01000400
Cyanobacteriota
Nostoc sp. KVJ20 [LSSA]
42055
41981
-
Gln
CTG
[ENA]
¡û
>W1711335765
MBRD01000008
Cyanobacteriota
Nostoc sp. MBR 210 [MBRD]
494922
494996
+
Gln
CTG
[ENA]
¡û
>w002269
AAAY02000028
Cyanobacteriota
Nostoc punctiforme [AAAY]
10825
10902
+
Gln
CTG
[ENA]
¡û
>C08006940
CP001037
Cyanobacteriota
Nostoc punctiforme PCC 73102 ATCC 29133; PCC 73102 [CP001037]
3441182
3441108
-
Gln
CTG
[Ensembl]
¡û
>WENV171003142
NNBT01001888
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
215
287
+
Gln
CTG
[ENA]
¢þ
>WENV171003387
NNBT01008331
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
678
750
+
Gln
CTG
[ENA]
¢þ
>WENV171003449
NNBU01000031
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
31683
31611
-
Gln
CTG
[ENA]
¢þ
>WENV171003734
NNBV01000559
[NNBV] plant metagenome; symbiotic tissue sample KVS11
3512
3586
+
Gln
CTG
[ENA]
¢þ
>C181105254
CP024785
Cyanobacteriota
Nostoc flagelliforme CCNUN1 [CP024785]
4344459
4344385
-
Gln
CTG
-
¡û
>C181137773
CP026681
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 [CP026681]
862185
862113
-
Gln
CTG
-
¡û
>C181137832
CP026692
Cyanobacteriota
Nostoc sp. 'Lobaria pulmonaria [5183] cyanobiont' [CP026692]
5266461
5266387
-
Gln
CTG
-
¡û
>C191001254
AP018318
Cyanobacteriota
Nostoc sp. HK-01 NIES-2109 [AP018318]
4727222
4727296
+
Gln
CTG
-
¡û
>C191083030
CP031941
Cyanobacteriota
Nostoc sphaeroides Kutzing En [CP031941]
3881318
3881390
+
Gln
CTG
-
¡û
>W1910008387
BDGE01000023
Cyanobacteriota
Nostoc cycadae WK-1 [BDGE]
341728
341654
-
Gln
CTG
[ENA]
¡û
>W1910020511
BDUD01000001
Cyanobacteriota
Nostoc commune NIES-4072 [BDUD]
6396699
6396773
+
Gln
CTG
[ENA]
¡û
>W1910792658
MRBZ01000030
Cyanobacteriota
Nostoc calcicola FACHB-389 [MRBZ]
20666
20740
+
Gln
CTG
[ENA]
¡û
>W1911118680
NOLI01000126
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 213 [NOLI]
12895
12823
-
Gln
CTG
[ENA]
¡û
>W1911118717
NOLJ01000001
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 210A [NOLJ]
468632
468558
-
Gln
CTG
[ENA]
¡û
>W1911118784
NOLK01000007
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
53155
53227
+
Gln
CTG
[ENA]
¡û
>W1911244299
NSHF01000587
Cyanobacteriota
Nostoc sp. 'Peltigera malacea cyanobiont' DB3992 [NSHF]
2601
2673
+
Gln
CTG
[ENA]
¡û
>C161038887
CP012036
Cyanobacteriota
Nostoc piscinale CENA21 [CP012036]
3704177
3704252
+
Gln
CTG
[Ensembl]
¡û
>C131004178
CP003548
Cyanobacteriota
Nostoc sp. PCC 7107 [CP003548]
3486402
3486328
-
Gln
CTG
[Ensembl]
¡û
>W1611066472
MBRD01000008
Cyanobacteriota
Nostoc sp. MBR 210 [MBRD]
494922
494996
+
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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