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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.254595 (55 seq.)
>W1710785162
LJHQ01000003
Alphaproteobacteria
Bosea sp. AAP35 [LJHQ]
139615
139690
+
Phe
GAA
[ENA]
¡û
>W1710869457
LMJT01000001
Alphaproteobacteria
Bosea sp. Root381 [LMJT]
19547
19622
+
Phe
GAA
[ENA]
¡û
>W1710879539
LMRT01000015
Alphaproteobacteria
Bosea sp. Leaf344 [LMRT]
234541
234616
+
Phe
GAA
[ENA]
¡û
>W1710893347
LNER01000043
Alphaproteobacteria
Rhizobiales bacterium Ga0074135 [LNER]
3156
3231
+
Phe
GAA
[ENA]
¡û
>W1711009512
LQQT01000004
Alphaproteobacteria
Chelatococcus daeguensis [LQQT]
56298
56373
+
Phe
GAA
[ENA]
¡û
>W1711072946
LSIB01000104
Alphaproteobacteria
Rhizobiales bacterium CCH3-A5 [LSIB]
931
856
-
Phe
GAA
[ENA]
¡û
>W1711073121
LSIG01000046
Alphaproteobacteria
Rhizobiales bacterium CCH10-E5 [LSIG]
250067
250142
+
Phe
GAA
[ENA]
¡û
>W1711073299
LSIK01000182
Alphaproteobacteria
Rhizobiales bacterium CCH9-A3 [LSIK]
15398
15323
-
Phe
GAA
[ENA]
¡û
>W1711073801
LSIY01000031
Alphaproteobacteria
Bradyrhizobium sp. CCH1-B1 [LSIY]
41520
41595
+
Phe
GAA
[ENA]
¡û
>W1711074499
LSJP01000089
Alphaproteobacteria
Rhizobiales bacterium CCH6-A4 [LSJP]
15903
15828
-
Phe
GAA
[ENA]
¡û
>W1711074578
LSJR01000010
Alphaproteobacteria
Rhizobiales bacterium CCH8-D1 [LSJR]
24740
24815
+
Phe
GAA
[ENA]
¡û
>W1711074747
LSJU01001317
Alphaproteobacteria
Erythrobacter donghaensis [LSJU]
8334
8259
-
Phe
GAA
[ENA]
¡û
>W1711074771
LSJV01000124
Alphaproteobacteria
Rhizobiales bacterium CCH11-D2 [LSJV]
35527
35452
-
Phe
GAA
[ENA]
¡û
>W1711074859
LSJX01000189
Alphaproteobacteria
Rhizobiales bacterium CCH2-A4 [LSJX]
15888
15813
-
Phe
GAA
[ENA]
¡û
>W1711075562
LSKN01000088
Alphaproteobacteria
Methylobacterium sp. CCH7-A2 [LSKN]
133635
133710
+
Phe
GAA
[ENA]
¡û
>C171049960
CP016464
Alphaproteobacteria
Bosea sp. RAC05 [CP016464]
2240133
2240208
+
Phe
GAA
-
¡û
>C171057736
CP017147
Alphaproteobacteria
Bosea vaviloviae Vaf18 [CP017147]
3425499
3425574
+
Phe
GAA
-
¡û
>C171072663
CP018095
Alphaproteobacteria
Chelatococcus daeguensis TAD1 [CP018095]
1508774
1508849
+
Phe
GAA
-
¡û
>WENV181227237
OFDN01003801
[OFDN] hot springs metagenome; Water
5496
5571
+
Phe
GAA
[ENA]
¢þ
>WENV181415116
OGCL01004334
[OGCL] hot springs metagenome; Hot spring water
3221
3146
-
Phe
GAA
[ENA]
¢þ
>WENV170577978
FSSH01004481
[FSSH] freshwater metagenome; drinking water
380
305
-
Phe
GAA
[ENA]
¢þ
>WENV170646133
JQGF01112592
[JQGF] wastewater metagenome; domestic wastewater sediment treated with ammonia and hydroxylamine at 100mg /litre each
125
50
-
Phe
GAA
[ENA]
¢þ
>WENV170712676
LNFM01016271
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
9982
9907
-
Phe
GAA
[ENA]
¢þ
>WENV171003156
NNBT01001966
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
33007
33082
+
Phe
GAA
[ENA]
¢þ
>WENV171003720
NNBV01000508
[NNBV] plant metagenome; symbiotic tissue sample KVS11
76113
76038
-
Phe
GAA
[ENA]
¢þ
>W141805320
JPKG01000059
Alphaproteobacteria
Bosea sp. LC85 [JPKG]
34937
34862
-
Phe
GAA
[ENA]
¡û
>W1810252032
PQFZ01000039
Alphaproteobacteria
Bosea psychrotolerans 1131 [PQFZ]
14611
14536
-
Phe
GAA
[ENA]
¡û
>W1810463343
PZZM01000001
Alphaproteobacteria
Bosea sp. 124 [PZZM]
56985
57060
+
Phe
GAA
[ENA]
¡û
>C151094745
CP012398
Alphaproteobacteria
Chelatococcus sp. CO-6 [CP012398]
3078621
3078696
+
Phe
GAA
-
¡û
>C161070664
CP014301
Alphaproteobacteria
Bosea sp. PAMC 26642 [CP014301]
567147
567222
+
Phe
GAA
[Ensembl]
¡û
>W121110771
ALIQ01000002
Alphaproteobacteria
Chelatococcus sp. GW1 [ALIQ]
8837
8762
-
Phe
GAA
[ENA]
¡û
>W1610550617
JXTJ01000005
Alphaproteobacteria
Bosea sp. WAO [JXTJ]
4550
4475
-
Phe
GAA
[ENA]
¡û
>W1610617187
LGSZ01000077
Alphaproteobacteria
Bosea vaviloviae [LGSZ]
55437
55512
+
Phe
GAA
[ENA]
¡û
>W1610631759
LIOL01000004
Alphaproteobacteria
Chelatococcus sambhunathii [LIOL]
1651
1576
-
Phe
GAA
[ENA]
¡û
>W1610648968
LJHQ01000003
Alphaproteobacteria
Bosea sp. AAP35 [LJHQ]
139615
139690
+
Phe
GAA
[ENA]
¡û
>W1610731803
LMJT01000001
Alphaproteobacteria
Bosea sp. Root381 [LMJT]
19547
19622
+
Phe
GAA
[ENA]
¡û
>W1610741885
LMRT01000015
Alphaproteobacteria
Bosea sp. Leaf344 [LMRT]
234541
234616
+
Phe
GAA
[ENA]
¡û
>W1610753613
LNER01000043
Alphaproteobacteria
Rhizobiales bacterium Ga0074135 [LNER]
3156
3231
+
Phe
GAA
[ENA]
¡û
>W1610858032
LQQT01000004
Alphaproteobacteria
Chelatococcus daeguensis [LQQT]
56298
56373
+
Phe
GAA
[ENA]
¡û
>W1610912206
LSIB01000104
Alphaproteobacteria
Rhizobiales bacterium CCH3-A5 [LSIB]
931
856
-
Phe
GAA
[ENA]
¡û
>W1610912426
LSIG01000046
Alphaproteobacteria
Rhizobiales bacterium CCH10-E5 [LSIG]
250067
250142
+
Phe
GAA
[ENA]
¡û
>W1610912604
LSIK01000182
Alphaproteobacteria
Rhizobiales bacterium CCH9-A3 [LSIK]
15398
15323
-
Phe
GAA
[ENA]
¡û
>W1610913106
LSIY01000031
Alphaproteobacteria
Bradyrhizobium sp. CCH1-B1 [LSIY]
41520
41595
+
Phe
GAA
[ENA]
¡û
>W1610913804
LSJP01000089
Alphaproteobacteria
Rhizobiales bacterium CCH6-A4 [LSJP]
15903
15828
-
Phe
GAA
[ENA]
¡û
>W1610913883
LSJR01000010
Alphaproteobacteria
Rhizobiales bacterium CCH8-D1 [LSJR]
24740
24815
+
Phe
GAA
[ENA]
¡û
>W1610914052
LSJU01001317
Alphaproteobacteria
Erythrobacter donghaensis [LSJU]
8334
8259
-
Phe
GAA
[ENA]
¡û
>W1610914076
LSJV01000124
Alphaproteobacteria
Rhizobiales bacterium CCH11-D2 [LSJV]
35527
35452
-
Phe
GAA
[ENA]
¡û
>W1610914164
LSJX01000189
Alphaproteobacteria
Rhizobiales bacterium CCH2-A4 [LSJX]
15888
15813
-
Phe
GAA
[ENA]
¡û
>W1610914867
LSKN01000088
Alphaproteobacteria
Methylobacterium sp. CCH7-A2 [LSKN]
133635
133710
+
Phe
GAA
[ENA]
¡û
>W1710064213
BCQA01000001
Alphaproteobacteria
Bosea sp. BIWAKO-01 [BCQA]
482146
482071
-
Phe
GAA
[ENA]
¡û
>W1710538962
FNUY01000008
Alphaproteobacteria
Bosea lathyri [FNUY]
176160
176235
+
Phe
GAA
[ENA]
¡û
>W1710564935
FOQV01000009
Alphaproteobacteria
Bosea sp. OK403 [FOQV]
223464
223539
+
Phe
GAA
[ENA]
¡û
>W1710660452
JXTJ01000005
Alphaproteobacteria
Bosea sp. WAO [JXTJ]
4550
4475
-
Phe
GAA
[ENA]
¡û
>W1710742801
LGSZ01000077
Alphaproteobacteria
Bosea vaviloviae [LGSZ]
55437
55512
+
Phe
GAA
[ENA]
¡û
>W1710764644
LIOL01000004
Alphaproteobacteria
Chelatococcus sambhunathii [LIOL]
1651
1576
-
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK