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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.255013 (35 seq.)
>W1710932119
LOHZ01000022
Bacillota
Thermovenabulum gondwanense [LOHZ]
208373
208448
+
Thr
GGT
[ENA]
¡û
>W131167582
ARDJ01000022
Bacillota
Thermoanaerobacter indiensis BSB-33 [ARDJ]
138855
138780
-
Thr
GGT
[ENA]
¡û
>C025840
AE008691
Bacillota
Caldanaerobacter subterraneus subsp. tengcongensis MB4 [AE008691]
2193158
2193083
-
Thr
GGT
[Ensembl]
¡û
>W141092585
AVAF01000051
Bacillota
Thermoanaerobacter sp. A7A [AVAF]
12520
12595
+
Thr
GGT
[ENA]
¡û
>WENV181226089
OFDK01000030
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
52255
52330
+
Thr
GGT
[ENA]
¢þ
>WENV181226250
OFDK01000377
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
9376
9451
+
Thr
GGT
[ENA]
¢þ
>WENV181404217
OGBZ01004434
[OGBZ] sediment metagenome; hot spring sediment
725
800
+
Thr
GGT
[ENA]
¢þ
>W141153141
AXDC01000042
Bacillota
Caldanaerobacter subterraneus subsp. yonseiensis KB-1 [AXDC]
23864
23789
-
Thr
GGT
[ENA]
¡û
>C08011034
CP000924
Bacillota
Thermoanaerobacter pseudethanolicus ATCC 33223 ATCC 33223; 39E [CP000924]
401638
401713
+
Thr
GGT
[Ensembl]
¡û
>WENV170562269
CZCB01001702
[CZCB] anaerobic digester metagenome; anaerobic digester
56226
56301
+
Thr
GGT
[ENA]
¢þ
>WENV170675668
LDZP01000193
[LDZP] terrestrial metagenome; oil reservoir sample I1
487
412
-
Thr
GGT
[ENA]
¢þ
>WENV170676009
LDZR01000003
[LDZR] terrestrial metagenome; oil reservoir sample K2
6128
6053
-
Thr
GGT
[ENA]
¢þ
>WENV170676246
LDZR01001850
[LDZR] terrestrial metagenome; oil reservoir sample K2
14500
14575
+
Thr
GGT
[ENA]
¢þ
>WENV170676661
LDZS01001797
[LDZS] terrestrial metagenome; oil reservoir sample K3
1260
1335
+
Thr
GGT
[ENA]
¢þ
>W09134142
ACQZ01000025
Bacillota
Thermoanaerobacter brockii subsp. finnii Ako-1 [ACQZ]
346
271
-
Thr
GGT
[ENA]
¡û
>C191108118
CP033580
Bacillota
Thermoanaerobacter ethanolicus JW 200 [CP033580]
2782446
2782371
-
Thr
GGT
-
¡û
>C151045312
CP009170
Bacillota
Thermoanaerobacter kivui DSM 2030; LKT-1 [CP009170]
1982116
1982041
-
Thr
GGT
[Ensembl]
¡û
>W10105952
ACXY01000030
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
30374
30449
+
Thr
GGT
[ENA]
¡û
>C10113543
CP002131
Bacillota
Thermosediminibacter oceani DSM 16646 [CP002131]
2115212
2115137
-
Thr
GGT
[Ensembl]
¡û
>W11108275
ACXY01000030
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
30374
30449
+
Thr
GGT
[ENA]
¡û
>W1511275105
JOOI01000002
Bacillota
Thermoanaerobacter sp. YS13 [JOOI]
876241
876316
+
Thr
GGT
[ENA]
¡û
>C11122461
CP002466
Bacillota
Thermoanaerobacter brockii subsp. finnii Ako-1 [CP002466]
397054
397129
+
Thr
GGT
[Ensembl]
¡û
>C11123247
CP002991
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [CP002991]
2312133
2312058
-
Thr
GGT
[Ensembl]
¡û
>W11152684
AEYS01000023
Bacillota
Thermoanaerobacter ethanolicus JW 200 [AEYS]
484
409
-
Thr
GGT
[ENA]
¡û
>W121068089
AJUD01000007
Bacillota
Thermoanaerobacter siderophilus SR4 [AJUD]
1195
1120
-
Thr
GGT
[ENA]
¡û
>W1610612300
LGEO01000030
Bacillota
Thermoanaerobacter thermocopriae [LGEO]
487
412
-
Thr
GGT
[ENA]
¡û
>W1610612648
LGEY01000042
Bacillota
Caldanaerobacter subterraneus [LGEY]
14500
14575
+
Thr
GGT
[ENA]
¡û
>W1610613119
LGFL01000022
Bacillota
Thermoanaerobacterales bacterium 50_218 [LGFL]
1260
1335
+
Thr
GGT
[ENA]
¡û
>W1610789588
LOHZ01000022
Bacillota
Thermovenabulum gondwanense [LOHZ]
208373
208448
+
Thr
GGT
[ENA]
¡û
>W1710515341
FNBS01000071
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FNBS]
13058
13133
+
Thr
GGT
[ENA]
¡û
>W1710560393
FONI01000064
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FONI]
630
555
-
Thr
GGT
[ENA]
¡û
>W1710583320
FQUR01000014
Bacillota
Thermoanaerobacter uzonensis DSM 18761 [FQUR]
628
553
-
Thr
GGT
[ENA]
¡û
>W1710733806
LGEO01000030
Bacillota
Thermoanaerobacter thermocopriae [LGEO]
487
412
-
Thr
GGT
[ENA]
¡û
>W1710733969
LGEY01000042
Bacillota
Caldanaerobacter subterraneus [LGEY]
14500
14575
+
Thr
GGT
[ENA]
¡û
>W1710734326
LGFL01000022
Bacillota
Thermoanaerobacterales bacterium 50_218 [LGFL]
1260
1335
+
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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