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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.255856 (62 seq.)
>W1710944170
LOQF01000010
Fusobacteriota
Sneathia sanguinegens [LOQF]
26395
26470
+
Thr
TGT
[ENA]
¡û
>W1710944269
LOQI01000003
Fusobacteriota
Oceanivirga salmonicida [LOQI]
40322
40247
-
Thr
TGT
[ENA]
¡û
>W1710944286
LOQI01000043
Fusobacteriota
Oceanivirga salmonicida [LOQI]
8891
8816
-
Thr
TGT
[ENA]
¡û
>WENV180712247
ODFT01000079
[ODFT] human metagenome; G_DNA_Posterior fornix
31168
31093
-
Thr
TGT
[ENA]
¢þ
>WENV180712296
ODFT01000139
[ODFT] human metagenome; G_DNA_Posterior fornix
1718
1793
+
Thr
TGT
[ENA]
¢þ
>WENV180735154
ODGZ01075297
[ODGZ] human metagenome; G_DNA_Supragingival plaque
265
340
+
Thr
TGT
[ENA]
¢þ
>WENV180774132
ODIJ01009287
[ODIJ] human metagenome; G_DNA_Tongue dorsum
1526
1451
-
Thr
TGT
[ENA]
¢þ
>WENV180854307
ODKX01002087
[ODKX] human metagenome; G_DNA_Tongue dorsum
5539
5464
-
Thr
TGT
[ENA]
¢þ
>WENV180854524
ODKX01004927
[ODKX] human metagenome; G_DNA_Tongue dorsum
3371
3446
+
Thr
TGT
[ENA]
¢þ
>WENV180854764
ODKX01010200
[ODKX] human metagenome; G_DNA_Tongue dorsum
1462
1387
-
Thr
TGT
[ENA]
¢þ
>WENV180855438
ODKX01113969
[ODKX] human metagenome; G_DNA_Tongue dorsum
190
115
-
Thr
TGT
[ENA]
¢þ
>WENV180855465
ODKX01146131
[ODKX] human metagenome; G_DNA_Tongue dorsum
76
1
-
Thr
TGT
[ENA]
¢þ
>WENV180901922
ODOK01008389
[ODOK] human metagenome; G_DNA_Tongue dorsum
307
232
-
Thr
TGT
[ENA]
¢þ
>WENV180902443
ODOK01057230
[ODOK] human metagenome; G_DNA_Tongue dorsum
195
270
+
Thr
TGT
[ENA]
¢þ
>WENV180929234
ODTN01001072
[ODTN] human metagenome; G_DNA_Tongue dorsum
6544
6619
+
Thr
TGT
[ENA]
¢þ
>WENV180929506
ODTN01003795
[ODTN] human metagenome; G_DNA_Tongue dorsum
1536
1461
-
Thr
TGT
[ENA]
¢þ
>WENV180929542
ODTN01004403
[ODTN] human metagenome; G_DNA_Tongue dorsum
310
235
-
Thr
TGT
[ENA]
¢þ
>WENV180929553
ODTN01004634
[ODTN] human metagenome; G_DNA_Tongue dorsum
1299
1224
-
Thr
TGT
[ENA]
¢þ
>WENV180942801
ODUA01000022
[ODUA] human metagenome; G_DNA_Posterior fornix
43866
43941
+
Thr
TGT
[ENA]
¢þ
>WENV180942904
ODUA01000116
[ODUA] human metagenome; G_DNA_Posterior fornix
2385
2460
+
Thr
TGT
[ENA]
¢þ
>WENV180948445
ODUG01001355
[ODUG] human metagenome; G_DNA_Tongue dorsum
1348
1273
-
Thr
TGT
[ENA]
¢þ
>WENV180948618
ODUG01002417
[ODUG] human metagenome; G_DNA_Tongue dorsum
8750
8675
-
Thr
TGT
[ENA]
¢þ
>WENV180948797
ODUG01004006
[ODUG] human metagenome; G_DNA_Tongue dorsum
7452
7527
+
Thr
TGT
[ENA]
¢þ
>WENV180948985
ODUG01006431
[ODUG] human metagenome; G_DNA_Tongue dorsum
5399
5324
-
Thr
TGT
[ENA]
¢þ
>WENV180949406
ODUG01016138
[ODUG] human metagenome; G_DNA_Tongue dorsum
2398
2323
-
Thr
TGT
[ENA]
¢þ
>WENV180949856
ODUG01045411
[ODUG] human metagenome; G_DNA_Tongue dorsum
145
70
-
Thr
TGT
[ENA]
¢þ
>WENV180949862
ODUG01045607
[ODUG] human metagenome; G_DNA_Tongue dorsum
695
770
+
Thr
TGT
[ENA]
¢þ
>WENV180975115
ODUY01001633
[ODUY] human metagenome; G_DNA_Supragingival plaque
2114
2039
-
Thr
TGT
[ENA]
¢þ
>WENV180977066
ODUY01444505
[ODUY] human metagenome; G_DNA_Supragingival plaque
2
77
+
Thr
TGT
[ENA]
¢þ
>WENV181045463
ODXW01000265
[ODXW] human metagenome; G_DNA_Tongue dorsum
28858
28933
+
Thr
TGT
[ENA]
¢þ
>WENV181045864
ODXW01002349
[ODXW] human metagenome; G_DNA_Tongue dorsum
7852
7927
+
Thr
TGT
[ENA]
¢þ
>WENV181058192
ODYL01004810
[ODYL] human metagenome; G_DNA_Tongue dorsum
5658
5583
-
Thr
TGT
[ENA]
¢þ
>WENV181058359
ODYL01008815
[ODYL] human metagenome; G_DNA_Tongue dorsum
3109
3184
+
Thr
TGT
[ENA]
¢þ
>WENV181058458
ODYL01012112
[ODYL] human metagenome; G_DNA_Tongue dorsum
2391
2466
+
Thr
TGT
[ENA]
¢þ
>WENV181058561
ODYL01017736
[ODYL] human metagenome; G_DNA_Tongue dorsum
1299
1224
-
Thr
TGT
[ENA]
¢þ
>WENV181058759
ODYL01031799
[ODYL] human metagenome; G_DNA_Tongue dorsum
711
786
+
Thr
TGT
[ENA]
¢þ
>WENV181058787
ODYL01034884
[ODYL] human metagenome; G_DNA_Tongue dorsum
624
699
+
Thr
TGT
[ENA]
¢þ
>WENV181067270
ODZI01011165
[ODZI] human metagenome; G_DNA_Supragingival plaque
1182
1257
+
Thr
TGT
[ENA]
¢þ
>WENV181067334
ODZI01013330
[ODZI] human metagenome; G_DNA_Supragingival plaque
245
320
+
Thr
TGT
[ENA]
¢þ
>WENV181067489
ODZI01021218
[ODZI] human metagenome; G_DNA_Supragingival plaque
1611
1686
+
Thr
TGT
[ENA]
¢þ
>WENV181090779
OEBC01003576
[OEBC] human metagenome; G_DNA_Supragingival plaque
2867
2792
-
Thr
TGT
[ENA]
¢þ
>WENV181125273
OEFT01039942
[OEFT] human metagenome; G_DNA_Tongue dorsum
181
256
+
Thr
TGT
[ENA]
¢þ
>WENV181134682
OEGG01000028
[OEGG] human metagenome; G_DNA_Tongue dorsum
75844
75769
-
Thr
TGT
[ENA]
¢þ
>WENV181135107
OEGG01003118
[OEGG] human metagenome; G_DNA_Tongue dorsum
297
222
-
Thr
TGT
[ENA]
¢þ
>WENV181135254
OEGG01007541
[OEGG] human metagenome; G_DNA_Tongue dorsum
1734
1809
+
Thr
TGT
[ENA]
¢þ
>WENV181135753
OEGG01147912
[OEGG] human metagenome; G_DNA_Tongue dorsum
90
165
+
Thr
TGT
[ENA]
¢þ
>WENV181179248
OEJT01002292
[OEJT] human metagenome; G_DNA_Supragingival plaque
4329
4404
+
Thr
TGT
[ENA]
¢þ
>WENV181180922
OEJU01001965
[OEJU] human metagenome; G_DNA_Supragingival plaque
8041
8116
+
Thr
TGT
[ENA]
¢þ
>WENV183709949
PDWI01036924
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
490
415
-
Thr
TGT
[ENA]
¢þ
>WENV183711817
PDWI01081344
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
2464
2389
-
Thr
TGT
[ENA]
¢þ
>WENV183715143
PDWI01223689
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1050
975
-
Thr
TGT
[ENA]
¢þ
>WENV183720185
PDWJ01028681
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
238
313
+
Thr
TGT
[ENA]
¢þ
>WENV183721057
PDWJ01053621
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
2959
2884
-
Thr
TGT
[ENA]
¢þ
>W09109791
ABUO01000012
Fusobacteriota
Sebaldella termitidis ATCC 33386 [ABUO]
51962
51887
-
Thr
TGT
[ENA]
¡û
>C151079078
CP011280
Fusobacteriota
Sneathia vaginalis SN35 [CP011280]
124338
124413
+
Thr
TGT
[Ensembl]
¡û
>C151079101
CP011280
Fusobacteriota
Sneathia vaginalis SN35 [CP011280]
316968
316893
-
Thr
TGT
[Ensembl]
¡û
>C10108189
CP001685
Fusobacteriota
Leptotrichia buccalis C-1013-b DSM 1135 [CP001685]
2223194
2223269
+
Thr
TGT
[Ensembl]
¡û
>C10108211
CP001685
Fusobacteriota
Leptotrichia buccalis C-1013-b DSM 1135 [CP001685]
487029
486954
-
Thr
TGT
[Ensembl]
¡û
>C10112700
CP001739
Fusobacteriota
Sebaldella termitidis ATCC 33386 [CP001739]
2957752
2957677
-
Thr
TGT
[Ensembl]
¡û
>W1610800470
LOQF01000010
Fusobacteriota
Sneathia sanguinegens [LOQF]
26395
26470
+
Thr
TGT
[ENA]
¡û
>W1610800569
LOQI01000003
Fusobacteriota
Oceanivirga salmonicida [LOQI]
40322
40247
-
Thr
TGT
[ENA]
¡û
>W1610800586
LOQI01000043
Fusobacteriota
Oceanivirga salmonicida [LOQI]
8891
8816
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK