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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.256423 (62 seq.)
>W131053729
ANAH01000140
Myxococcota
Cystobacter fuscus DSM 2262 [ANAH]
3315
3242
-
Ala
TGC
[ENA]
¡û
>W1711625283
MPIN01000010
Myxococcota
Cystobacter ferrugineus [MPIN]
501
428
-
Ala
TGC
[ENA]
¡û
>W1711625286
MPIN01000012
Myxococcota
Cystobacter ferrugineus [MPIN]
63098
63171
+
Ala
TGC
[ENA]
¡û
>C000528
CP000251
Myxococcota
Anaeromyxobacter dehalogenans 2CP-C [CP000251]
1363154
1363229
+
Ala
TGC
[Ensembl]
¡û
>C000554
CP000251
Myxococcota
Anaeromyxobacter dehalogenans 2CP-C [CP000251]
2947207
2947132
-
Ala
TGC
[Ensembl]
¡û
>C014473
CP000113
Myxococcota
Myxococcus xanthus DK 1622 [CP000113]
378338
378410
+
Ala
TGC
[Ensembl]
¡û
>C014509
CP000113
Myxococcota
Myxococcus xanthus DK 1622 [CP000113]
8964821
8964749
-
Ala
TGC
[Ensembl]
¡û
>w022419
AAWM01000002
Myxococcota
Anaeromyxobacter sp. Fw109-5 [AAWM]
541534
541457
-
Ala
TGC
[ENA]
¡û
>WENV180081383
MPMC02112150
[MPMC] marine metagenome; 100 m water sample filtered on 30 um supor filter
147
222
+
Ala
TGC
[ENA]
¢þ
>WENV180286172
OBIG01006891
[OBIG] metagenome; freshwater sediment
154
229
+
Ala
TGC
[ENA]
¢þ
>WENV180354962
OBNE01038341
[OBNE] groundwater metagenome; groundwater
174
247
+
Ala
TGC
[ENA]
¢þ
>WENV180355909
OBNJ01006211
[OBNJ] sediment metagenome; sediment
465
392
-
Ala
TGC
[ENA]
¢þ
>WENV180356373
OBNK01019545
[OBNK] sediment metagenome; sediment
92
167
+
Ala
TGC
[ENA]
¢þ
>W08007463
ABKC01000032
Myxococcota
Anaeromyxobacter dehalogenans 2CP-1 [ABKC]
8515
8590
+
Ala
TGC
[ENA]
¡û
>WENV181164422
OEIR01156117
[OEIR] soil metagenome; soil
153
78
-
Ala
TGC
[ENA]
¢þ
>WENV181190184
OEOF01568473
[OEOF] activated sludge metagenome; Activated Sludge
88
161
+
Ala
TGC
[ENA]
¢þ
>C08000653
CP000769
Myxococcota
Anaeromyxobacter sp. Fw109-5 [CP000769]
3968411
3968339
-
Ala
TGC
[Ensembl]
¡û
>C08000656
CP000769
Myxococcota
Anaeromyxobacter sp. Fw109-5 [CP000769]
2981452
2981380
-
Ala
TGC
[Ensembl]
¡û
>C08000676
CP001131
Myxococcota
Anaeromyxobacter sp. K [CP001131]
1403063
1403138
+
Ala
TGC
[Ensembl]
¡û
>C08000703
CP001131
Myxococcota
Anaeromyxobacter sp. K [CP001131]
3007671
3007599
-
Ala
TGC
[Ensembl]
¡û
>WENV170396222
CEUC01224438
[CEUC] marine metagenome genome assembly TARA_137_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
14
89
+
Ala
TGC
[ENA]
¢þ
>C181057840
CP022098
Myxococcota
Cystobacter fuscus DSM 52655 [CP022098]
388179
388252
+
Ala
TGC
-
¡û
>C181057844
CP022098
Myxococcota
Cystobacter fuscus DSM 52655 [CP022098]
4359613
4359686
+
Ala
TGC
-
¡û
>C181057863
CP022098
Myxococcota
Cystobacter fuscus DSM 52655 [CP022098]
12052421
12052348
-
Ala
TGC
-
¡û
>C181057880
CP022098
Myxococcota
Cystobacter fuscus DSM 52655 [CP022098]
7685728
7685655
-
Ala
TGC
-
¡û
>C181060614
CP022203
Myxococcota
Corallococcus macrosporus DSM 14697 [CP022203]
413059
413132
+
Ala
TGC
-
¡û
>C181060649
CP022203
Myxococcota
Corallococcus macrosporus DSM 14697 [CP022203]
8755767
8755694
-
Ala
TGC
-
¡û
>C191013175
CP017170
Myxococcota
Myxococcus xanthus GH5.1.9c20 [CP017170]
374213
374286
+
Ala
TGC
-
¡û
>C191013210
CP017170
Myxococcota
Myxococcus xanthus GH5.1.9c20 [CP017170]
9081148
9081075
-
Ala
TGC
-
¡û
>C191013306
CP017172
Myxococcota
Myxococcus xanthus KF4.3.9c1 [CP017172]
371452
371525
+
Ala
TGC
-
¡û
>C191013341
CP017172
Myxococcota
Myxococcus xanthus KF4.3.9c1 [CP017172]
9247471
9247398
-
Ala
TGC
-
¡û
>C191013436
CP017174
Myxococcota
Myxococcus xanthus MC3.5.9c15 [CP017174]
373495
373568
+
Ala
TGC
-
¡û
>C191013471
CP017174
Myxococcota
Myxococcus xanthus MC3.5.9c15 [CP017174]
9136069
9135996
-
Ala
TGC
-
¡û
>C191128652
CP034669
Myxococcota
Corallococcus coralloides B035 [CP034669]
142047
142120
+
Ala
TGC
-
¡û
>C191128663
CP034669
Myxococcota
Corallococcus coralloides B035 [CP034669]
3129567
3129640
+
Ala
TGC
-
¡û
>C191128670
CP034669
Myxococcota
Corallococcus coralloides B035 [CP034669]
9404352
9404279
-
Ala
TGC
-
¡û
>W141695219
JMCB01000038
Myxococcota
Hyalangium minutum [JMCB]
3646
3571
-
Ala
TGC
[ENA]
¡û
>W09101974
AAHD01000053
Myxococcota
Anaeromyxobacter dehalogenans 2CP-C [AAHD]
12349
12274
-
Ala
TGC
[ENA]
¡û
>W09107283
ABHX01000065
Myxococcota
Anaeromyxobacter sp. K [ABHX]
8353
8428
+
Ala
TGC
[ENA]
¡û
>W09107288
ABHX01000095
Myxococcota
Anaeromyxobacter sp. K [ABHX]
9251
9326
+
Ala
TGC
[ENA]
¡û
>C09100301
CP001359
Myxococcota
Anaeromyxobacter dehalogenans 2CP-1 [CP001359]
1497390
1497465
+
Ala
TGC
[Ensembl]
¡û
>C09100328
CP001359
Myxococcota
Anaeromyxobacter dehalogenans 2CP-1 [CP001359]
3079763
3079688
-
Ala
TGC
[Ensembl]
¡û
>W1911701637
QNUN01000048
Myxococcota
Corallococcus sp. H22C18031201 [QNUN]
2232
2305
+
Ala
TGC
[ENA]
¡û
>C151008153
CP006003
Myxococcota
Myxococcus fulvus 124B02 [CP006003]
233147
233222
+
Ala
TGC
[Ensembl]
¡û
>C151008187
CP006003
Myxococcota
Myxococcus fulvus 124B02 [CP006003]
10844282
10844207
-
Ala
TGC
[Ensembl]
¡û
>C151008192
CP006003
Myxococcota
Myxococcus fulvus 124B02 [CP006003]
7351970
7351895
-
Ala
TGC
[Ensembl]
¡û
>C151091025
CP012109
Myxococcota
Myxococcus hansupus mixupus [CP012109]
8838382
8838455
+
Ala
TGC
[Ensembl]
¡û
>C151091028
CP012109
Myxococcota
Myxococcus hansupus mixupus [CP012109]
8232585
8232512
-
Ala
TGC
[Ensembl]
¡û
>ENV09000532
ABSO01014520
Freshwater sediment metagenome lwFormate_C1
506
431
-
Ala
TGC
[ENA]
¡û
>ENV09000689
ABSP01015568
Freshwater sediment metagenome lwMethane_C1
629
554
-
Ala
TGC
[ENA]
¡û
>W1510006510
BAZG01000249
Myxococcota
Anaeromyxobacter sp. PSR-1 [BAZG]
1883
1958
+
Ala
TGC
[ENA]
¡û
>C11114305
CP002830
Myxococcota
Corallococcus macrosporus HW-1 [CP002830]
2302752
2302825
+
Ala
TGC
[Ensembl]
¡û
>C11114343
CP002830
Myxococcota
Corallococcus macrosporus HW-1 [CP002830]
7739469
7739396
-
Ala
TGC
[Ensembl]
¡û
>C11119103
CP002271
Myxococcota
Stigmatella aurantiaca DW4/3-1 [CP002271]
577112
577185
+
Ala
TGC
[Ensembl]
¡û
>C11119132
CP002271
Myxococcota
Stigmatella aurantiaca DW4/3-1 [CP002271]
6868906
6868833
-
Ala
TGC
[Ensembl]
¡û
>C121012051
CP003389
Myxococcota
Corallococcus coralloides DSM 2259 [CP003389]
130311
130386
+
Ala
TGC
[Ensembl]
¡û
>C121012062
CP003389
Myxococcota
Corallococcus coralloides DSM 2259 [CP003389]
3337369
3337444
+
Ala
TGC
[Ensembl]
¡û
>C121012070
CP003389
Myxococcota
Corallococcus coralloides DSM 2259 [CP003389]
9896447
9896372
-
Ala
TGC
[Ensembl]
¡û
>W121102907
AKXT01000121
Myxococcota
Myxococcus hansupus DSM 436 [AKXT]
179
106
-
Ala
TGC
[ENA]
¡û
>W1710544144
FOAP01000045
Myxococcota
Stigmatella aurantiaca [FOAP]
2566
2639
+
Ala
TGC
[ENA]
¡û
>W1710554019
FOIB01000024
Myxococcota
Myxococcus fulvus [FOIB]
3633
3558
-
Ala
TGC
[ENA]
¡û
>W1710554377
FOIJ01000037
Myxococcota
Stigmatella erecta [FOIJ]
3662
3589
-
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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