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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.2583 (17 seq.)
>WENV180022338
FTFY01001064
[FTFY] metagenome; soil
3747
3652
-
SeC
TCA
[ENA]
¡û
>WENV180023709
FTIE01051158
[FTIE] metagenome; soil
96
1
-
SeC
TCA
[ENA]
¡û
>WENV180026662
FTIU01013943
[FTIU] metagenome; soil
416
511
+
SeC
TCA
[ENA]
¡û
>W1911572388
PDBX01000001
Betaproteobacteria
Collimonas sp. PA-H2 [PDBX]
3393155
3393060
-
Sec
TCA
[ENA]
¡û
>C152000117
CP009962
Betaproteobacteria
Collimonas arenae Cal35 [CP009962]
1024055
1023960
-
SeC
TCA
[Ensembl]
¡û
>W2011353311
RAIL01000001
Betaproteobacteria
Collimonas fungivorans ES_Al-A1 [RAIL]
4597872
4597967
+
SeC
TCA
[ENA]
¡û
>W2012509401
WXXL01000001
Betaproteobacteria
PMB3(1) [WXXL]
135547
135452
-
SeC
TCA
[ENA]
¡û
>W2110566775
JAGQED010000004
Betaproteobacteria
Collimonas antrihumi DSM 104040 [JAGQED]
129816
129721
-
SeC
TCA
[ENA]
¡û
>W2110566845
JAGQEE010000009
Betaproteobacteria
Collimonas sp. RLT1W51 [JAGQEE]
135883
135788
-
SeC
TCA
[ENA]
¡û
>W2110566863
JAGQEF010000004
Betaproteobacteria
Collimonas sp. RXD172-2 [JAGQEF]
135967
135872
-
SeC
TCA
[ENA]
¡û
>W2110566900
JAGQEG010000003
Betaproteobacteria
Collimonas sp. RXD178 [JAGQEG]
57671
57766
+
SeC
TCA
[ENA]
¡û
>C11200009
CP002745
Betaproteobacteria
Collimonas fungivorans Ter331 [CP002745]
959796
959701
-
SeC
TCA
[Ensembl]
¡û
>C162000057
CP013232
Betaproteobacteria
Collimonas fungivorans Ter6 [CP013232]
1178662
1178567
-
SeC
TCA
[Ensembl]
¡û
>C162000058
CP013233
Betaproteobacteria
Collimonas arenae Ter10 [CP013233]
801350
801255
-
SeC
TCA
-
¡û
>C162000060
CP013235
Betaproteobacteria
Collimonas arenae Ter282 [CP013235]
801497
801402
-
SeC
TCA
[Ensembl]
¡û
>C162000061
CP013236
Betaproteobacteria
Collimonas pratensis Ter291 [CP013236]
925375
925280
-
SeC
TCA
[Ensembl]
¡û
>W1720001106
FOQI01000007
Betaproteobacteria
Collimonas sp. OK307 [FOQI]
122277
122182
-
SeC
TCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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