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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.258968 (42 seq.)
>W131167564
ARDJ01000015
Bacillota
Thermoanaerobacter indiensis BSB-33 [ARDJ]
183364
183439
+
Trp
CCA
[ENA]
¡û
>C025832
AE008691
Bacillota
Caldanaerobacter subterraneus subsp. tengcongensis MB4 [AE008691]
1521836
1521911
+
Trp
CCA
[Ensembl]
¡û
>w018967
AATV01000006
Bacillota
Thermoanaerobacter sp. X514 X514 [AATV]
51522
51599
+
Trp
CCA
[ENA]
¡û
>w010199
AAKQ01000044
Bacillota
Thermoanaerobacter pseudethanolicus ATCC 33223 [AAKQ]
10721
10798
+
Trp
CCA
[ENA]
¡û
>WENV180097631
MTBK01200801
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
5
80
+
Trp
CCA
[ENA]
¢þ
>W141092617
AVAF01000164
Bacillota
Thermoanaerobacter sp. A7A [AVAF]
60370
60295
-
Trp
CCA
[ENA]
¡û
>WENV181226117
OFDK01000061
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
42939
42864
-
Trp
CCA
[ENA]
¢þ
>W141153132
AXDC01000018
Bacillota
Caldanaerobacter subterraneus subsp. yonseiensis KB-1 [AXDC]
20134
20209
+
Trp
CCA
[ENA]
¡û
>C08010963
CP000923
Bacillota
Thermoanaerobacter sp. X514 [CP000923]
1873960
1874035
+
Trp
CCA
[Ensembl]
¡û
>C08011081
CP000924
Bacillota
Thermoanaerobacter pseudethanolicus ATCC 33223 ATCC 33223; 39E [CP000924]
951882
951810
-
Trp
CCA
[Ensembl]
¡û
>ENV08002420
ABPT01013979
microbial mat metagenome; Guerrero Negro Hypersaline Mat 05; altitude 310m AMSL; sample depth 1m below water level, 4-5mm depth into the mat
389
314
-
Trp
CCA
[ENA]
¡û
>WENV170675672
LDZP01000256
[LDZP] terrestrial metagenome; oil reservoir sample I1
1241
1166
-
Trp
CCA
[ENA]
¢þ
>WENV170676424
LDZR01002627
[LDZR] terrestrial metagenome; oil reservoir sample K2
5687
5612
-
Trp
CCA
[ENA]
¢þ
>WENV170676425
LDZR01002627
[LDZR] terrestrial metagenome; oil reservoir sample K2
643
568
-
Trp
CCA
[ENA]
¢þ
>WENV170676891
LDZS01003048
[LDZS] terrestrial metagenome; oil reservoir sample K3
34
109
+
Trp
CCA
[ENA]
¢þ
>W09112145
ABXP01000116
Bacillota
Caldanaerobacter subterraneus DSM 12653 [ABXP]
24908
24983
+
Trp
CCA
[ENA]
¡û
>W09133515
ACPF01000007
Bacillota
Thermoanaerobacter sp. X513 [ACPF]
52643
52718
+
Trp
CCA
[ENA]
¡û
>W09134148
ACQZ01000036
Bacillota
Thermoanaerobacter brockii subsp. finnii Ako-1 [ACQZ]
11827
11902
+
Trp
CCA
[ENA]
¡û
>W09135136
ACVK01000002
Bacillota
Thermoanaerobacter mathranii subsp. mathranii str. A3 [ACVK]
13346
13421
+
Trp
CCA
[ENA]
¡û
>W09135888
ACXP01000047
Bacillota
Thermoanaerobacter sp. X561 [ACXP]
1287
1362
+
Trp
CCA
[ENA]
¡û
>C191108115
CP033580
Bacillota
Thermoanaerobacter ethanolicus JW 200 [CP033580]
2058605
2058680
+
Trp
CCA
-
¡û
>C151045303
CP009170
Bacillota
Thermoanaerobacter kivui DSM 2030; LKT-1 [CP009170]
1418344
1418419
+
Trp
CCA
[Ensembl]
¡û
>W10105931
ACXY01000013
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
53346
53271
-
Trp
CCA
[ENA]
¡û
>C10113443
CP002032
Bacillota
Thermoanaerobacter mathranii subsp. mathranii str. A3 [CP002032]
1408922
1408997
+
Trp
CCA
[Ensembl]
¡û
>W11108254
ACXY01000013
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
53346
53271
-
Trp
CCA
[ENA]
¡û
>W1511275072
JOOI01000001
Bacillota
Thermoanaerobacter sp. YS13 [JOOI]
697533
697608
+
Trp
CCA
[ENA]
¡û
>C11122508
CP002466
Bacillota
Thermoanaerobacter brockii subsp. finnii Ako-1 [CP002466]
944075
944000
-
Trp
CCA
[Ensembl]
¡û
>C11122738
CP002210
Bacillota
Thermoanaerobacter sp. X513 [CP002210]
1080384
1080309
-
Trp
CCA
[Ensembl]
¡û
>C11123240
CP002991
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [CP002991]
1511017
1511092
+
Trp
CCA
[Ensembl]
¡û
>W11152643
AEYS01000006
Bacillota
Thermoanaerobacter ethanolicus JW 200 [AEYS]
67181
67256
+
Trp
CCA
[ENA]
¡û
>W121010901
AGJQ01000026
Bacillota
Desulfoscipio gibsoniae DSM 7213 [AGJQ]
12055
12130
+
Trp
CCA
[ENA]
¡û
>W1610043649
BAZY01000010
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [BAZY]
26696
26621
-
Trp
CCA
[ENA]
¡û
>W121068125
AJUD01000019
Bacillota
Thermoanaerobacter siderophilus SR4 [AJUD]
48689
48614
-
Trp
CCA
[ENA]
¡û
>C131002649
CP003273
Bacillota
Desulfoscipio gibsoniae DSM 7213 [CP003273]
2042591
2042666
+
Trp
CCA
[Ensembl]
¡û
>W1610612304
LGEO01000093
Bacillota
Thermoanaerobacter thermocopriae [LGEO]
1241
1166
-
Trp
CCA
[ENA]
¡û
>W1610613187
LGFN01000152
Bacillota
Caldanaerobacter subterraneus [LGFN]
34
109
+
Trp
CCA
[ENA]
¡û
>W1710040809
BAZY01000010
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [BAZY]
26696
26621
-
Trp
CCA
[ENA]
¡û
>W1710515345
FNBS01000102
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FNBS]
6412
6337
-
Trp
CCA
[ENA]
¡û
>W1710560385
FONI01000044
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FONI]
13212
13137
-
Trp
CCA
[ENA]
¡û
>W1710583309
FQUR01000010
Bacillota
Thermoanaerobacter uzonensis DSM 18761 [FQUR]
188734
188659
-
Trp
CCA
[ENA]
¡û
>W1710733810
LGEO01000093
Bacillota
Thermoanaerobacter thermocopriae [LGEO]
1241
1166
-
Trp
CCA
[ENA]
¡û
>W1710734394
LGFN01000152
Bacillota
Caldanaerobacter subterraneus [LGFN]
34
109
+
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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