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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.259184 (57 seq.)
>C171130936
LT706985
Actinomycetota
Vaginimicrobium propionicum Marseille-P3275 [LT706985]
820594
820669
+
His
GTG
-
¡û
>WENV180698203
ODDE01081995
[ODDE] human metagenome; G_DNA_Supragingival plaque
169
94
-
His
GTG
[ENA]
¢þ
>WENV180727285
ODGU01003896
[ODGU] human metagenome; G_DNA_Supragingival plaque
3864
3939
+
His
GTG
[ENA]
¢þ
>WENV180739380
ODHD01060713
[ODHD] human metagenome; G_DNA_Supragingival plaque
188
113
-
His
GTG
[ENA]
¢þ
>WENV180778710
ODIM01049101
[ODIM] human metagenome; G_DNA_Supragingival plaque
251
176
-
His
GTG
[ENA]
¢þ
>WENV180781830
ODIP01005097
[ODIP] human metagenome; G_DNA_Supragingival plaque
442
515
+
His
GTG
[ENA]
¢þ
>WENV180787663
ODIS01011123
[ODIS] human metagenome; G_DNA_Supragingival plaque
391
316
-
His
GTG
[ENA]
¢þ
>WENV180788241
ODIS01041001
[ODIS] human metagenome; G_DNA_Supragingival plaque
947
1022
+
His
GTG
[ENA]
¢þ
>WENV180797683
ODJB01099310
[ODJB] human metagenome; G_DNA_Supragingival plaque
562
487
-
His
GTG
[ENA]
¢þ
>WENV180801624
ODJD01074027
[ODJD] human metagenome; G_DNA_Supragingival plaque
391
316
-
His
GTG
[ENA]
¢þ
>WENV180804168
ODJG01000833
[ODJG] human metagenome; G_DNA_Supragingival plaque
9753
9680
-
His
GTG
[ENA]
¢þ
>WENV180833107
ODKC01013677
[ODKC] human metagenome; G_DNA_Supragingival plaque
1192
1267
+
His
GTG
[ENA]
¢þ
>WENV180833913
ODKD01000924
[ODKD] human metagenome; G_DNA_Supragingival plaque
6179
6104
-
His
GTG
[ENA]
¢þ
>WENV180835925
ODKE01021654
[ODKE] human metagenome; G_DNA_Supragingival plaque
111
186
+
His
GTG
[ENA]
¢þ
>WENV180846551
ODKT01014428
[ODKT] human metagenome; G_DNA_Supragingival plaque
1458
1533
+
His
GTG
[ENA]
¢þ
>WENV180859232
ODLD01000098
[ODLD] human metagenome; G_DNA_Supragingival plaque
51635
51710
+
His
GTG
[ENA]
¢þ
>WENV180889002
ODMN01009482
[ODMN] human metagenome; G_DNA_Supragingival plaque
1605
1678
+
His
GTG
[ENA]
¢þ
>WENV180922428
ODTJ01003912
[ODTJ] human metagenome; G_DNA_Supragingival plaque
149
224
+
His
GTG
[ENA]
¢þ
>WENV180924732
ODTK01013730
[ODTK] human metagenome; G_DNA_Supragingival plaque
114
189
+
His
GTG
[ENA]
¢þ
>WENV180927582
ODTM01001455
[ODTM] human metagenome; G_DNA_Supragingival plaque
3534
3609
+
His
GTG
[ENA]
¢þ
>WENV180938384
ODTX01001700
[ODTX] human metagenome; G_DNA_Supragingival plaque
10254
10179
-
His
GTG
[ENA]
¢þ
>WENV180938549
ODTX01003121
[ODTX] human metagenome; G_DNA_Supragingival plaque
3621
3548
-
His
GTG
[ENA]
¢þ
>WENV180943979
ODUC01005526
[ODUC] human metagenome; G_DNA_Supragingival plaque
3
78
+
His
GTG
[ENA]
¢þ
>WENV180973341
ODUW01003759
[ODUW] human metagenome; G_DNA_Supragingival plaque
4549
4624
+
His
GTG
[ENA]
¢þ
>WENV180974290
ODUW01177148
[ODUW] human metagenome; G_DNA_Supragingival plaque
3
78
+
His
GTG
[ENA]
¢þ
>WENV180980548
ODVE01000450
[ODVE] human metagenome; G_DNA_Supragingival plaque
2405
2330
-
His
GTG
[ENA]
¢þ
>WENV180982548
ODVF01000082
[ODVF] human metagenome; G_DNA_Supragingival plaque
57329
57404
+
His
GTG
[ENA]
¢þ
>WENV181002112
ODVX01000022
[ODVX] human metagenome; G_DNA_Supragingival plaque
125770
125845
+
His
GTG
[ENA]
¢þ
>WENV181008102
ODWE01001947
[ODWE] human metagenome; G_DNA_Supragingival plaque
6051
5978
-
His
GTG
[ENA]
¢þ
>WENV181008780
ODWE01013754
[ODWE] human metagenome; G_DNA_Supragingival plaque
2561
2486
-
His
GTG
[ENA]
¢þ
>WENV181012864
ODWK01053461
[ODWK] human metagenome; G_DNA_Supragingival plaque
192
117
-
His
GTG
[ENA]
¢þ
>WENV181030108
ODXF01034881
[ODXF] human metagenome; G_DNA_Supragingival plaque
37
112
+
His
GTG
[ENA]
¢þ
>WENV181049700
ODYD01001536
[ODYD] human metagenome; G_DNA_Supragingival plaque
5772
5697
-
His
GTG
[ENA]
¢þ
>WENV181050402
ODYD01017296
[ODYD] human metagenome; G_DNA_Supragingival plaque
1396
1321
-
His
GTG
[ENA]
¢þ
>WENV181063165
ODYP01000154
[ODYP] human metagenome; G_DNA_Supragingival plaque
50690
50765
+
His
GTG
[ENA]
¢þ
>WENV181067227
ODZI01009635
[ODZI] human metagenome; G_DNA_Supragingival plaque
592
667
+
His
GTG
[ENA]
¢þ
>WENV181070462
OEAE01001872
[OEAE] human metagenome; G_DNA_Supragingival plaque
4742
4667
-
His
GTG
[ENA]
¢þ
>WENV181070862
OEAE01016760
[OEAE] human metagenome; G_DNA_Supragingival plaque
1038
963
-
His
GTG
[ENA]
¢þ
>WENV181091766
OEBC01085822
[OEBC] human metagenome; G_DNA_Supragingival plaque
124
199
+
His
GTG
[ENA]
¢þ
>WENV181144013
OEHM01044562
[OEHM] human metagenome; G_DNA_Supragingival plaque
419
344
-
His
GTG
[ENA]
¢þ
>WENV181152435
OEIA01001460
[OEIA] human metagenome; G_DNA_Supragingival plaque
1008
1083
+
His
GTG
[ENA]
¢þ
>WENV181156198
OEIE01005108
[OEIE] human metagenome; G_DNA_Supragingival plaque
76
1
-
His
GTG
[ENA]
¢þ
>WENV181160919
OEIK01061449
[OEIK] human metagenome; G_DNA_Supragingival plaque
305
230
-
His
GTG
[ENA]
¢þ
>WENV181179143
OEJT01001580
[OEJT] human metagenome; G_DNA_Supragingival plaque
10254
10179
-
His
GTG
[ENA]
¢þ
>WENV181181671
OEJV01000056
[OEJV] human metagenome; G_DNA_Supragingival plaque
62638
62713
+
His
GTG
[ENA]
¢þ
>W141278059
JAFB01000012
Actinomycetota
Amycolatopsis taiwanensis DSM 45107 [JAFB]
60027
60102
+
His
GTG
[ENA]
¡û
>WENV183508579
OMHE01002232
[OMHE] human oral metagenome; human oral
1632
1557
-
His
GTG
[ENA]
¢þ
>WENV183509352
OMHH01015118
[OMHH] human oral metagenome; human oral
494
419
-
His
GTG
[ENA]
¢þ
>WENV183807153
PVBE011174996
[PVBE] marine metagenome; water
269
194
-
His
GTG
[ENA]
¢þ
>C191173858
CP040007
Actinomycetota
Arachnia propionica F0700 [CP040007]
1158649
1158574
-
His
GTG
-
¡û
>C191210873
LR134406
Actinomycetota
Arachnia propionica NCTC12967 [LR134406]
1155247
1155172
-
His
GTG
-
¡û
>C191214588
LR134535
Actinomycetota
Arachnia propionica NCTC11666 [LR134535]
1152089
1152014
-
His
GTG
-
¡û
>W141766108
JODT01000041
Actinomycetota
Streptomyces achromogenes subsp. achromogenes [JODT]
11910
11837
-
His
GTG
[ENA]
¡û
>W141772913
JOIC01000020
Actinomycetota
Streptomyces sp. NRRL F-3307 [JOIC]
76587
76660
+
His
GTG
[ENA]
¡û
>C121002965
CP002734
Actinomycetota
Arachnia propionica F0230a [CP002734]
1170986
1170911
-
His
GTG
[Ensembl]
¡û
>W1610074471
BCWS01000001
Actinomycetota
Arachnia propionica NBRC 14587 [BCWS]
1037769
1037844
+
His
GTG
[ENA]
¡û
>W1710071589
BCWS01000001
Actinomycetota
Arachnia propionica NBRC 14587 [BCWS]
1037769
1037844
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK