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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.259521 (57 seq.)
>W1711292647
LZXY01000005
Gammaproteobacteria
Glaciecola punicea [LZXY]
77571
77496
-
Gln
TTG
[ENA]
¡û
>W1711292648
LZXY01000005
Gammaproteobacteria
Glaciecola punicea [LZXY]
77456
77381
-
Gln
TTG
[ENA]
¡û
>W131176075
ARJT01000026
Gammaproteobacteria
Salinimonas chungwhensis DSM 16280 [ARJT]
102475
102400
-
Gln
TTG
[ENA]
¡û
>W131176076
ARJT01000026
Gammaproteobacteria
Salinimonas chungwhensis DSM 16280 [ARJT]
102360
102285
-
Gln
TTG
[ENA]
¡û
>W131176079
ARJT01000026
Gammaproteobacteria
Salinimonas chungwhensis DSM 16280 [ARJT]
102049
101974
-
Gln
TTG
[ENA]
¡û
>W131221863
AUAV01000003
Gammaproteobacteria
Glaciecola pallidula DSM 14239 = ACAM 615 [AUAV]
241477
241552
+
Gln
TTG
[ENA]
¡û
>C171071796
CP018031
Gammaproteobacteria
Alteromonas sp. RW2A1 [CP018031]
1598715
1598790
+
Gln
TTG
-
¡û
>C171071798
CP018031
Gammaproteobacteria
Alteromonas sp. RW2A1 [CP018031]
1598901
1598976
+
Gln
TTG
-
¡û
>WENV180049230
MPLU02044871
[MPLU] marine metagenome; 90 m water sample filtered on 0.2 um supor filter
430
505
+
Gln
TTG
[ENA]
¡û
>WENV180102817
OAOZ01022199
[OAOZ] marine metagenome; ENVO:00002010
179
254
+
Gln
TTG
[ENA]
¡û
>WENV180113536
OAPQ01148326
[OAPQ] marine metagenome; ENVO: 00002149
154
79
-
Gln
TTG
[ENA]
¡û
>WENV180293832
OBIY01001946
[OBIY] beach sand metagenome; beach sand
4995
4920
-
Gln
TTG
[ENA]
¡û
>WENV180395005
OBPT01000362
[OBPT] marine metagenome; ENVO:00002010 seawater
5777
5852
+
Gln
TTG
[ENA]
¡û
>WENV180396335
OBPV01000032
[OBPV] marine metagenome; ENVO:00002010
9125
9050
-
Gln
TTG
[ENA]
¡û
>WENV180396338
OBPV01000039
[OBPV] marine metagenome; ENVO:00002010
478
553
+
Gln
TTG
[ENA]
¡û
>WENV180396339
OBPV01000039
[OBPV] marine metagenome; ENVO:00002010
638
713
+
Gln
TTG
[ENA]
¡û
>WENV180593864
OCOY01001002
[OCOY] marine metagenome; ENVO:00002010
1729
1804
+
Gln
TTG
[ENA]
¡û
>WENV180594045
OCOY01019668
[OCOY] marine metagenome; ENVO:00002010
59
134
+
Gln
TTG
[ENA]
¡û
>WENV181322787
OFKU01020100
[OFKU] marine metagenome; sea ice
226
151
-
Gln
TTG
[ENA]
¡û
>WENV181322788
OFKU01020100
[OFKU] marine metagenome; sea ice
107
32
-
Gln
TTG
[ENA]
¡û
>W141152674
AXBZ01000020
Gammaproteobacteria
Alcanivorax sp. P2S70 [AXBZ]
34426
34351
-
Gln
TTG
[ENA]
¡û
>W141223956
BAEQ01000023
Gammaproteobacteria
Glaciecola pallidula DSM 14239 = ACAM 615 [BAEQ]
281370
281445
+
Gln
TTG
[ENA]
¡û
>W141224103
BAET01000007
Gammaproteobacteria
Glaciecola punicea DSM 14233 = ACAM 611 [BAET]
92183
92108
-
Gln
TTG
[ENA]
¡û
>W141224104
BAET01000007
Gammaproteobacteria
Glaciecola punicea DSM 14233 = ACAM 611 [BAET]
92068
91993
-
Gln
TTG
[ENA]
¡û
>WENV182542348
OJAY01000148
[OJAY] seawater metagenome; Sea water
153
78
-
Gln
TTG
[ENA]
¡û
>WENV182542676
OJAZ01000471
[OJAZ] seawater metagenome; Sea water
8238
8313
+
Gln
TTG
[ENA]
¡û
>WENV182546916
OJBQ01002347
[OJBQ] seawater metagenome; Sea water
526
601
+
Gln
TTG
[ENA]
¡û
>WENV182566674
OJEM01000021
[OJEM] seawater metagenome; Sea water
43505
43430
-
Gln
TTG
[ENA]
¡û
>WENV182573041
OJFP01000014
[OJFP] seawater metagenome; Sea water
9593
9518
-
Gln
TTG
[ENA]
¡û
>WENV182580892
OJGW01023892
[OJGW] seawater metagenome; Sea water
698
623
-
Gln
TTG
[ENA]
¡û
>WENV182586137
OJHJ01003496
[OJHJ] seawater metagenome; Sea water
2007
1932
-
Gln
TTG
[ENA]
¡û
>WENV182586313
OJHK01000053
[OJHK] seawater metagenome; Sea water
102825
102900
+
Gln
TTG
[ENA]
¡û
>WENV182592741
OJIR01015965
[OJIR] seawater metagenome; Sea water
726
801
+
Gln
TTG
[ENA]
¡û
>WENV183617154
OOEE01076125
[OOEE] marine metagenome; sea ice
383
308
-
Gln
TTG
[ENA]
¡û
>WENV183622657
OOFW01000864
[OOFW] marine metagenome; sea ice
2761
2686
-
Gln
TTG
[ENA]
¡û
>WENV183622790
OOFW01009858
[OOFW] marine metagenome; sea ice
256
181
-
Gln
TTG
[ENA]
¡û
>WENV183624836
OOGE01017407
[OOGE] marine metagenome; sea ice
239
314
+
Gln
TTG
[ENA]
¡û
>WENV170266752
CERE01106371
[CERE] marine metagenome genome assembly TARA_070_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2329
2404
+
Gln
TTG
[ENA]
¡û
>WENV170294169
CESC01044604
[CESC] marine metagenome genome assembly TARA_078_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
561
486
-
Gln
TTG
[ENA]
¡û
>C181113238
CP025115
Gammaproteobacteria
Alteromonas sp. MB-3u-76 [CP025115]
2834756
2834831
+
Gln
TTG
-
¡û
>C181113240
CP025115
Gammaproteobacteria
Alteromonas sp. MB-3u-76 [CP025115]
2834942
2835017
+
Gln
TTG
-
¡û
>W141814257
JQFW01000027
Gammaproteobacteria
Alteromonas sp. LOR [JQFW]
96796
96721
-
Gln
TTG
[ENA]
¡û
>W141814259
JQFW01000027
Gammaproteobacteria
Alteromonas sp. LOR [JQFW]
96610
96535
-
Gln
TTG
[ENA]
¡û
>W141814843
JQHG01000037
Gammaproteobacteria
Alteromonas sp. LTR [JQHG]
98921
98846
-
Gln
TTG
[ENA]
¡û
>W141814844
JQHG01000037
Gammaproteobacteria
Alteromonas sp. LTR [JQHG]
98733
98658
-
Gln
TTG
[ENA]
¡û
>W1910001334
AQOQ01000009
Gammaproteobacteria
Alcanivorax sp. MD8A [AQOQ]
90967
91042
+
Gln
TTG
[ENA]
¡û
>W1911809145
QYYA01000004
Gammaproteobacteria
Alcanivorax sp. MTEO17 [QYYA]
235427
235502
+
Gln
TTG
[ENA]
¡û
>W1810155438
PJAR01000044
Gammaproteobacteria
Glaciecola sp. 33A [PJAR]
292971
292896
-
Gln
TTG
[ENA]
¡û
>W2010071663
AQOQ01000009
Gammaproteobacteria
Alcanivorax sp. MD8A [AQOQ]
90967
91042
+
Gln
TTG
[ENA]
¡û
>W2010439350
JAAAWN010000007
Gammaproteobacteria
Alteromonas sp. 345S023 [JAAAWN]
148220
148145
-
Gln
TTG
[ENA]
¡û
>W2010439411
JAAAWO010000003
Gammaproteobacteria
Alteromonas genovensis LMG 24078 [JAAAWO]
141634
141709
+
Gln
TTG
[ENA]
¡û
>W2010439413
JAAAWO010000003
Gammaproteobacteria
Alteromonas genovensis LMG 24078 [JAAAWO]
141820
141895
+
Gln
TTG
[ENA]
¡û
>W2010439464
JAAAWP010000001
Gammaproteobacteria
Alteromonas hispanica LMG 22958 [JAAAWP]
681464
681539
+
Gln
TTG
[ENA]
¡û
>W2010439466
JAAAWP010000001
Gammaproteobacteria
Alteromonas hispanica LMG 22958 [JAAAWP]
681650
681725
+
Gln
TTG
[ENA]
¡û
>W2011344669
QYYA01000004
Gammaproteobacteria
Alcanivorax sp. MTEO17 [QYYA]
235427
235502
+
Gln
TTG
[ENA]
¡û
>C121004907
CP003060
Gammaproteobacteria
Glaciecola nitratireducens FR1064 [CP003060]
2386247
2386322
+
Gln
TTG
[Ensembl]
¡û
>C121004908
CP003060
Gammaproteobacteria
Glaciecola nitratireducens FR1064 [CP003060]
2386381
2386456
+
Gln
TTG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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