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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.259685 (109 seq.)
>W1711293916
LZYZ01000005
Bacillota
Clostridium saccharobutylicum [LZYZ]
276931
277006
+
Thr
GGT
[ENA]
¡û
>W1711294003
LZZA01000138
Bacillota
Clostridium saccharobutylicum [LZZA]
27539
27614
+
Thr
GGT
[ENA]
¡û
>C171045576
CP016086
Bacillota
Clostridium saccharobutylicum NCP 200 [CP016086]
201017
201092
+
Thr
GGT
-
¡û
>C171045727
CP016089
Bacillota
Clostridium saccharobutylicum BAS/B3/SW/136 [CP016089]
201017
201092
+
Thr
GGT
-
¡û
>C171045896
CP016091
Bacillota
Clostridium saccharobutylicum NCP 258 [CP016091]
212684
212759
+
Thr
GGT
-
¡û
>C171045981
CP016092
Bacillota
Clostridium saccharobutylicum NCP 195 [CP016092]
201017
201092
+
Thr
GGT
-
¡û
>WENV180121432
OASR01001269
[OASR] human gut metagenome; faeces
36
111
+
Thr
GGT
[ENA]
¡û
>WENV180124068
OASX01001636
[OASX] human gut metagenome; faeces
6156
6231
+
Thr
GGT
[ENA]
¡û
>WENV180129294
OATC01000343
[OATC] human gut metagenome; faeces
11851
11926
+
Thr
GGT
[ENA]
¡û
>WENV180144426
OAUA01009159
[OAUA] human gut metagenome; faeces
732
657
-
Thr
GGT
[ENA]
¡û
>WENV180153124
OAUR01001502
[OAUR] human gut metagenome; faeces
1724
1799
+
Thr
GGT
[ENA]
¡û
>WENV180170975
OAVV01009012
[OAVV] human gut metagenome; faeces
39
114
+
Thr
GGT
[ENA]
¡û
>WENV180180627
OAWL01000075
[OAWL] human gut metagenome; faeces
16381
16306
-
Thr
GGT
[ENA]
¡û
>WENV180419444
OBVM01010141
[OBVM] human gut metagenome; faeces
139
64
-
Thr
GGT
[ENA]
¡û
>WENV180431249
OBWG01009928
[OBWG] human gut metagenome; faeces
1132
1057
-
Thr
GGT
[ENA]
¡û
>WENV180444269
OBWZ01000436
[OBWZ] human gut metagenome; faeces
74
149
+
Thr
GGT
[ENA]
¡û
>WENV180504931
OCAO01000235
[OCAO] human gut metagenome; faeces
13634
13709
+
Thr
GGT
[ENA]
¡û
>WENV180506792
OCAS01009879
[OCAS] human gut metagenome; faeces
1153
1078
-
Thr
GGT
[ENA]
¡û
>WENV180761088
ODHZ01004457
[ODHZ] human metagenome; G_DNA_Stool
8135
8210
+
Thr
GGT
[ENA]
¡û
>WENV181426234
OGCQ01003765
[OGCQ] human gut metagenome; human gut
10459
10384
-
Thr
GGT
[ENA]
¡û
>WENV181752508
OGQQ01006787
[OGQQ] human gut metagenome; faeces
189
264
+
Thr
GGT
[ENA]
¡û
>WENV181809506
OGST01000362
[OGST] human gut metagenome; fecal sample 7 from infant 6
28586
28661
+
Thr
GGT
[ENA]
¡û
>WENV181818995
OGTU01002318
[OGTU] human gut metagenome; fecal sample 6 from infant 4
251
176
-
Thr
GGT
[ENA]
¡û
>WENV182601946
OJJJ01001874
[OJJJ] metagenome; faeces
1999
2074
+
Thr
GGT
[ENA]
¡û
>WENV182617366
OJKD01002297
[OJKD] metagenome; faeces
222
297
+
Thr
GGT
[ENA]
¡û
>WENV182835022
OKFJ01001154
[OKFJ] human gut metagenome; human gut
1401
1326
-
Thr
GGT
[ENA]
¡û
>WENV182838177
OKGO01001322
[OKGO] human gut metagenome; human gut
250
175
-
Thr
GGT
[ENA]
¡û
>WENV182848025
OKKE01004563
[OKKE] human gut metagenome; human gut
891
816
-
Thr
GGT
[ENA]
¡û
>WENV182855278
OKMY01001968
[OKMY] human gut metagenome; human gut
2377
2449
+
Thr
GGT
[ENA]
¡û
>WENV182865623
OKQK01002803
[OKQK] human gut metagenome; human gut
172
97
-
Thr
GGT
[ENA]
¡û
>WENV183245038
OLRE01001072
[OLRE] human gut metagenome; faeces
27976
27901
-
Thr
GGT
[ENA]
¡û
>WENV170561581
CZCA01014311
[CZCA] anaerobic digester metagenome; anaerobic digester
810
885
+
Thr
GGT
[ENA]
¡û
>C191012382
CP016786
Bacillota
Clostridium isatidis DSM 15098 [CP016786]
233507
233582
+
Thr
GGT
-
¡û
>C141007588
CP006721
Bacillota
Clostridium saccharobutylicum DSM 13864 [CP006721]
201017
201092
+
Thr
GGT
[Ensembl]
¡û
>W1810052432
PDCI01000006
Bacillota
Clostridium neonatale LCDC99A006 [PDCI]
226684
226609
-
Thr
GGT
[ENA]
¡û
>W1810052523
PDCJ01000003
Bacillota
Clostridium neonatale LCDC99A005 [PDCJ]
289002
288927
-
Thr
GGT
[ENA]
¡û
>W1810178744
PJSH01000003
Bacillota
Clostridium perfringens W1319 [PJSH]
199723
199648
-
Thr
GGT
[ENA]
¡û
>W1810179051
PJSL01000001
Bacillota
Clostridium perfringens SOM-NE34 [PJSL]
2267683
2267608
-
Thr
GGT
[ENA]
¡û
>W1810179308
PJSO01000017
Bacillota
Clostridium perfringens 11 [PJSO]
246
171
-
Thr
GGT
[ENA]
¡û
>W1810179619
PJSS01000003
Bacillota
Clostridium perfringens PBS5 [PJSS]
203115
203040
-
Thr
GGT
[ENA]
¡û
>W1810180429
PJTC01000017
Bacillota
Clostridium perfringens EHE-NE7 [PJTC]
273
198
-
Thr
GGT
[ENA]
¡û
>W1810180726
PJTG01000020
Bacillota
Clostridium perfringens WER-NE36 [PJTG]
273
198
-
Thr
GGT
[ENA]
¡û
>W1810534659
QDAF01000009
Bacillota
Clostridium perfringens BzA [QDAF]
100708
100633
-
Thr
GGT
[ENA]
¡û
>W2010210326
CABHID010000010
Bacillota
Clostridium perfringens 4928STDY7387878 [CABHID]
28930
29005
+
Thr
GGT
[ENA]
¡û
>W2010211388
CABHJB010000014
Bacillota
Clostridium perfringens 4928STDY7387927 [CABHJB]
315
240
-
Thr
GGT
[ENA]
¡û
>W2010264269
CABKOG020000003
Bacillota
Clostridium tertium [CABKOG]
3197709
3197634
-
Thr
GGT
[ENA]
¡û
>W2010583902
JAAZWR010000046
Bacillota
Clostridium saccharobutylicum DJ002 [JAAZWR]
326
251
-
Thr
GGT
[ENA]
¡û
>W2010583980
JAAZWS010000040
Bacillota
Clostridium saccharobutylicum DJ003 [JAAZWS]
27319
27394
+
Thr
GGT
[ENA]
¡û
>W2010584018
JAAZWT010000045
Bacillota
Clostridium saccharobutylicum DJ007 [JAAZWT]
27319
27394
+
Thr
GGT
[ENA]
¡û
>W2010584546
JABAEQ010000042
Bacillota
Clostridium saccharobutylicum DJ039 [JABAEQ]
27319
27394
+
Thr
GGT
[ENA]
¡û
>W2010584606
JABAET010000044
Bacillota
Clostridium saccharobutylicum DJ099 [JABAET]
326
251
-
Thr
GGT
[ENA]
¡û
>W2010585331
JABAGZ010000044
Bacillota
Clostridium saccharobutylicum DJ117 [JABAGZ]
27320
27395
+
Thr
GGT
[ENA]
¡û
>W2010585394
JABAHA010000050
Bacillota
Clostridium saccharobutylicum DJ122 [JABAHA]
27319
27394
+
Thr
GGT
[ENA]
¡û
>W2010585453
JABAHB010000043
Bacillota
Clostridium saccharobutylicum DJ160 [JABAHB]
326
251
-
Thr
GGT
[ENA]
¡û
>W2010585805
JABAIX010000039
Bacillota
Clostridium saccharobutylicum DJ167 [JABAIX]
27320
27395
+
Thr
GGT
[ENA]
¡û
>W2010600209
JABFUI010000001
Bacillota
Clostridium saccharobutylicum DJ071 [JABFUI]
4847133
4847058
-
Thr
GGT
[ENA]
¡û
>W2010600286
JABFUJ010000001
Bacillota
Clostridium saccharobutylicum DJ072 [JABFUJ]
2564942
2565017
+
Thr
GGT
[ENA]
¡û
>W2010600782
JABFUO010000001
Bacillota
Clostridium saccharobutylicum DJ087 [JABFUO]
282067
281992
-
Thr
GGT
[ENA]
¡û
>W2010600922
JABFUQ010000002
Bacillota
Clostridium saccharobutylicum DJ093 [JABFUQ]
941116
941041
-
Thr
GGT
[ENA]
¡û
>W2010601038
JABFUR010000001
Bacillota
Clostridium saccharobutylicum DJ094 [JABFUR]
4829200
4829125
-
Thr
GGT
[ENA]
¡û
>W2010601114
JABFUS010000001
Bacillota
Clostridium saccharobutylicum DJ096 [JABFUS]
4618683
4618608
-
Thr
GGT
[ENA]
¡û
>W2010601221
JABFUT010000001
Bacillota
Clostridium saccharobutylicum DJ100 [JABFUT]
4810510
4810435
-
Thr
GGT
[ENA]
¡û
>W2010601309
JABFUU010000001
Bacillota
Clostridium saccharobutylicum DJ111 [JABFUU]
4696025
4695950
-
Thr
GGT
[ENA]
¡û
>W2010601405
JABFUV010000001
Bacillota
Clostridium saccharobutylicum DJ115 [JABFUV]
4836813
4836738
-
Thr
GGT
[ENA]
¡û
>W2010601488
JABFUW010000002
Bacillota
Clostridium saccharobutylicum DJ118 [JABFUW]
266620
266695
+
Thr
GGT
[ENA]
¡û
>W2010601600
JABFUX010000004
Bacillota
Clostridium saccharobutylicum DJ178 [JABFUX]
30575
30650
+
Thr
GGT
[ENA]
¡û
>W2010601663
JABFUY010000001
Bacillota
Clostridium saccharobutylicum DJ250 [JABFUY]
4901053
4900978
-
Thr
GGT
[ENA]
¡û
>W2010601863
JABFVA010000002
Bacillota
Clostridium saccharobutylicum DJ271 [JABFVA]
676345
676270
-
Thr
GGT
[ENA]
¡û
>W2010630119
JABTBK010000001
Bacillota
Clostridium saccharobutylicum DJ276 [JABTBK]
374145
374220
+
Thr
GGT
[ENA]
¡û
>W2010632457
JABTET010000012
Bacillota
Clostridium saccharobutylicum DJ070 [JABTET]
27579
27654
+
Thr
GGT
[ENA]
¡û
>W2010632550
JABTEU010000009
Bacillota
Clostridium saccharobutylicum DJ132 [JABTEU]
27579
27654
+
Thr
GGT
[ENA]
¡û
>W2010632636
JABTEV010000009
Bacillota
Clostridium saccharobutylicum DJ146 [JABTEV]
27579
27654
+
Thr
GGT
[ENA]
¡û
>W2010633777
JABUEP010000009
Bacillota
Clostridium saccharobutylicum DJ148 [JABUEP]
27579
27654
+
Thr
GGT
[ENA]
¡û
>W2010633861
JABUEQ010000009
Bacillota
Clostridium saccharobutylicum DJ041 [JABUEQ]
27579
27654
+
Thr
GGT
[ENA]
¡û
>W2010633943
JABUER010000009
Bacillota
Clostridium saccharobutylicum DJ005 [JABUER]
27579
27654
+
Thr
GGT
[ENA]
¡û
>W2010634028
JABUES010000009
Bacillota
Clostridium saccharobutylicum DJ260 [JABUES]
27579
27654
+
Thr
GGT
[ENA]
¡û
>W2010634108
JABUET010000009
Bacillota
Clostridium saccharobutylicum DJ120 [JABUET]
101202
101127
-
Thr
GGT
[ENA]
¡û
>W2010634196
JABUEU010000009
Bacillota
Clostridium saccharobutylicum DJ285 [JABUEU]
27579
27654
+
Thr
GGT
[ENA]
¡û
>W2010661350
JACAZP010000001
Bacillota
Clostridium saccharobutylicum DJ081 [JACAZP]
2234607
2234532
-
Thr
GGT
[ENA]
¡û
>W2010661516
JACAZR010000001
Bacillota
Clostridium saccharobutylicum DJ156 [JACAZR]
408451
408526
+
Thr
GGT
[ENA]
¡û
>W2010664610
JACBNL010000009
Bacillota
Clostridium saccharobutylicum DJ133 [JACBNL]
27579
27654
+
Thr
GGT
[ENA]
¡û
>W2010664766
JACBNN010000009
Bacillota
Clostridium saccharobutylicum DJ130 [JACBNN]
101202
101127
-
Thr
GGT
[ENA]
¡û
>W2010664936
JACBNP010000009
Bacillota
Clostridium saccharobutylicum DJ268 [JACBNP]
101202
101127
-
Thr
GGT
[ENA]
¡û
>W2010684316
JACEQZ010000009
Bacillota
Clostridium saccharobutylicum DJ286 [JACEQZ]
27579
27654
+
Thr
GGT
[ENA]
¡û
>W2010693238
JACGZA010000009
Bacillota
Clostridium saccharobutylicum DJ224 [JACGZA]
101202
101127
-
Thr
GGT
[ENA]
¡û
>W2010693312
JACGZB010000009
Bacillota
Clostridium saccharobutylicum DJ018 [JACGZB]
27579
27654
+
Thr
GGT
[ENA]
¡û
>W2010693399
JACGZC010000009
Bacillota
Clostridium saccharobutylicum DJ142 [JACGZC]
101202
101127
-
Thr
GGT
[ENA]
¡û
>W2010693495
JACGZD010000002
Bacillota
Clostridium saccharobutylicum DJ006 [JACGZD]
947272
947197
-
Thr
GGT
[ENA]
¡û
>W2010693662
JACGZF010000001
Bacillota
Clostridium saccharobutylicum DJ101 [JACGZF]
4835428
4835353
-
Thr
GGT
[ENA]
¡û
>W2010693735
JACGZG010000001
Bacillota
Clostridium saccharobutylicum DJ147 [JACGZG]
2599488
2599413
-
Thr
GGT
[ENA]
¡û
>W2011152393
OAOE01000038
Bacillota
Clostridium tertium [OAOE]
28773
28848
+
Thr
GGT
[ENA]
¡û
>W2011848218
UICQ01000001
Bacillota
Clostridium neonatale C25 [UICQ]
198791
198866
+
Thr
GGT
[ENA]
¡û
>W2011848295
UICR01000001
Bacillota
Clostridium neonatale NEC86 [UICR]
198818
198893
+
Thr
GGT
[ENA]
¡û
>W2011848458
UICU01000001
Bacillota
Clostridium neonatale NEC26 [UICU]
198804
198879
+
Thr
GGT
[ENA]
¡û
>W2011848581
UICW01000001
Bacillota
Clostridium neonatale NEC32 [UICW]
198841
198916
+
Thr
GGT
[ENA]
¡û
>W2011950013
UWJD01000001
Bacillota
Clostridium neonatale NEC25 [UWJD]
198750
198825
+
Thr
GGT
[ENA]
¡û
>W2011954793
UYIN01000020
Bacillota
Clostridium carnis NCTC10913 [UYIN]
164003
164078
+
Thr
GGT
[ENA]
¡û
>W2110341107
JADMSE010000001
Bacillota
Clostridium tertium BSD2780120874_150323_E10 [JADMSE]
174696
174621
-
Thr
GGT
[ENA]
¡û
>W2110368215
JADPFN010000009
Bacillota
Clostridium tertium 1001275B_160808_H2 [JADPFN]
87911
87836
-
Thr
GGT
[ENA]
¡û
>W2110522162
JAGDMP010000180
Bacillota
Clostridium neonatale Marseille-Q4564 [JAGDMP]
8407
8482
+
Thr
GGT
[ENA]
¡û
>W2110625815
JAHLZG010000001
Bacillota
Clostridium tertium WC0709 [JAHLZG]
28496
28571
+
Thr
GGT
[ENA]
¡û
>C231653076
OU997945
Bacillota
Clostridium neonatale CNEO [OU997945]
201813
201888
+
Thr
GGT
-
¡û
>W2130021581
JADNAT010000014
Bacillota
Clostridium sp. 1001275B_160808_H3 [JADNAT]
28841
28916
+
Thr
GGT
[ENA]
¡û
>W1610030617
AYXL01000187
Bacillota
Clostridium saccharobutylicum DSM 13864 [AYXL]
33855
33780
-
Thr
GGT
[ENA]
¡û
>W1610112581
CZLD01000015
Bacillota
Clostridium neonatale [CZLD]
289300
289225
-
Thr
GGT
[ENA]
¡û
>WENV082968
BAAW01016331
Gut microbiome of Human (healthy human sample F1-U, Infant, Feale)
344
269
-
Thr
GGT
[ENA]
>W1710027740
AYXL01000187
Bacillota
Clostridium saccharobutylicum DSM 13864 [AYXL]
33855
33780
-
Thr
GGT
[ENA]
¡û
>W1710115285
CZLD01000015
Bacillota
Clostridium neonatale [CZLD]
289300
289225
-
Thr
GGT
[ENA]
¡û
>W1710584325
FQVM01000003
Bacillota
Clostridium fallax [FQVM]
34706
34781
+
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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