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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.259739 (81 seq.)
>W1710785210
LJHR01000004
Alphaproteobacteria
alpha proteobacterium AAP38 [LJHR]
130797
130722
-
Glu
TTC
[ENA]
¡û
>W1711511590
MLCO01000020
Alphaproteobacteria
Pseudoroseomonas deserti M3 [MLCO]
6146
6071
-
Glu
TTC
[ENA]
¡û
>W1711589318
MOEB01000002
Alphaproteobacteria
Aerophototrophica crusticola MIMtkB3 [MOEB]
152766
152841
+
Glu
TTC
[ENA]
¡û
>W131223691
AUCG01000014
Alphaproteobacteria
Niveispirillum irakense DSM 11586 [AUCG]
72925
72850
-
Glu
TTC
[ENA]
¡û
>W131223720
AUCG01000017
Alphaproteobacteria
Niveispirillum irakense DSM 11586 [AUCG]
298491
298416
-
Glu
TTC
[ENA]
¡û
>WENV180342789
OBLJ01135418
[OBLJ] soil metagenome; Clay
308
233
-
Glu
TTC
[ENA]
¡û
>WENV180343775
OBLK01084045
[OBLK] soil metagenome; Clay
260
185
-
Glu
TTC
[ENA]
¡û
>WENV180692508
OCZS010579393
[OCZS] soil metagenome; soil
255
330
+
Glu
TTC
[ENA]
¡û
>WENV181169920
OEIV010014937
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
1283
1358
+
Glu
TTC
[ENA]
¡û
>WENV181227844
OFDN01057781
[OFDN] hot springs metagenome; Water
223
298
+
Glu
TTC
[ENA]
¡û
>WENV170003199
AGTN01258076
[AGTN] bioreactor metagenome; poplar biomass
303
228
-
Glu
TTC
[ENA]
¡û
>WENV170004047
AGTN01544953
[AGTN] bioreactor metagenome; poplar biomass
129
204
+
Glu
TTC
[ENA]
¡û
>C181120657
CP025611
Alphaproteobacteria
Niveispirillum cyanobacteriorum TH16 [CP025611, CP025612]
404636
404711
+
Glu
TTC
-
¡û
>W141816698
JQKB01000023
Alphaproteobacteria
Belnapia moabensis DSM 16746 [JQKB]
87416
87491
+
Glu
TTC
[ENA]
¡û
>C09108690
CP000613
Alphaproteobacteria
Rhodospirillum centenum SW SW; ATCC 51521 [CP000613]
1351281
1351206
-
Glu
TTC
[Ensembl]
¡û
>W1910548177
FZOI01000004
Alphaproteobacteria
Azospirillum sp. RU38E [FZOI]
252380
252455
+
Glu
TTC
[ENA]
¡û
>W1910548189
FZOI01000004
Alphaproteobacteria
Azospirillum sp. RU38E [FZOI]
45781
45706
-
Glu
TTC
[ENA]
¡û
>W1910548559
FZOP01000004
Alphaproteobacteria
Azospirillum sp. RU37A [FZOP]
252380
252455
+
Glu
TTC
[ENA]
¡û
>W1910548571
FZOP01000004
Alphaproteobacteria
Azospirillum sp. RU37A [FZOP]
45781
45706
-
Glu
TTC
[ENA]
¡û
>W1911139215
NOXS01000025
Alphaproteobacteria
Elstera sp. TH019 [NOXS]
84460
84535
+
Glu
TTC
[ENA]
¡û
>W1911139330
NOXU01000030
Alphaproteobacteria
Niveispirillum sp. 1-14 [NOXU]
337577
337652
+
Glu
TTC
[ENA]
¡û
>W1911702304
QOCQ01000009
Alphaproteobacteria
Rhodospirillaceae bacterium SYSU D60007 [QOCQ]
176545
176620
+
Glu
TTC
[ENA]
¡û
>W1911768598
QXGS01000013
Alphaproteobacteria
Roseomonas sp. CPCC 101021 [QXGS]
20546
20471
-
Glu
TTC
[ENA]
¡û
>W1810062048
PDNU01000008
Alphaproteobacteria
Pseudoroseomonas rhizosphaerae YW11 [PDNU]
58658
58733
+
Glu
TTC
[ENA]
¡û
>W1810062312
PDOA01000003
Alphaproteobacteria
Pseudoroseomonas aestuarii JR1/69-1-13 [PDOA]
46505
46430
-
Glu
TTC
[ENA]
¡û
>W1810605699
QGNJ01000005
Alphaproteobacteria
Oleisolibacter albus NAU-10 [QGNJ]
245394
245319
-
Glu
TTC
[ENA]
¡û
>W1810692332
QLIX01000006
Alphaproteobacteria
Roseicella frigidaeris DB-1506 [QLIX]
2884
2809
-
Glu
TTC
[ENA]
¡û
>SRA1015237
SRR023845.514000
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
107
32
-
Glu
TTC
[SRA]
>W2010320861
CACSJM010000283
Alphaproteobacteria
Roseomonas sp. 18066 [CACSJM]
2425
2500
+
Glu
TTC
[ENA]
¡û
>W2010429938
FZOI01000004
Alphaproteobacteria
Azospirillum sp. RU38E [FZOI]
252380
252455
+
Glu
TTC
[ENA]
¡û
>W2010429950
FZOI01000004
Alphaproteobacteria
Azospirillum sp. RU38E [FZOI]
45781
45706
-
Glu
TTC
[ENA]
¡û
>W2010430320
FZOP01000004
Alphaproteobacteria
Azospirillum sp. RU37A [FZOP]
252380
252455
+
Glu
TTC
[ENA]
¡û
>W2010430332
FZOP01000004
Alphaproteobacteria
Azospirillum sp. RU37A [FZOP]
45781
45706
-
Glu
TTC
[ENA]
¡û
>W2010597962
JABFHG010000014
Alphaproteobacteria
Roseicella sp. DB1501 [JABFHG]
6663
6738
+
Glu
TTC
[ENA]
¡û
>W2010728021
JACIGH010000006
Alphaproteobacteria
Rhodospirillum centenum DSM 8284 [JACIGH]
177682
177757
+
Glu
TTC
[ENA]
¡û
>W2011014715
NOXS01000025
Alphaproteobacteria
Elstera sp. TH019 [NOXS]
84460
84535
+
Glu
TTC
[ENA]
¡û
>W2011014830
NOXU01000030
Alphaproteobacteria
Niveispirillum sp. 1-14 [NOXU]
337577
337652
+
Glu
TTC
[ENA]
¡û
>W2011278919
QOCQ01000009
Alphaproteobacteria
Rhodospirillaceae bacterium SYSU D60007 [QOCQ]
176545
176620
+
Glu
TTC
[ENA]
¡û
>W2011326155
QXGS01000013
Alphaproteobacteria
Roseomonas sp. CPCC 101021 [QXGS]
20546
20471
-
Glu
TTC
[ENA]
¡û
>W2011355712
RAQU01000073
Alphaproteobacteria
Roseomonas sp. Z24 [RAQU]
16550
16475
-
Glu
TTC
[ENA]
¡û
>W2011416825
RFLX01000019
Alphaproteobacteria
Roseomonas sp. Z23 [RFLX]
16550
16475
-
Glu
TTC
[ENA]
¡û
>W2011604035
SJDM01000059
Alphaproteobacteria
Crenalkalicoccus roseus YIM 78023 [SJDM]
7539
7464
-
Glu
TTC
[ENA]
¡û
>W2011615203
SJXD01000022
Alphaproteobacteria
Roseococcus sp. SYP-B2431 [SJXD]
7663
7738
+
Glu
TTC
[ENA]
¡û
>W2011616350
SKBM01000001
Alphaproteobacteria
Paracraurococcus sp. NE82 [SKBM]
155543
155618
+
Glu
TTC
[ENA]
¡û
>W2011639118
SMOA01000064
Alphaproteobacteria
Paracraurococcus ruber JCM9931 [SMOA]
23794
23719
-
Glu
TTC
[ENA]
¡û
>W2011647037
SNVJ01000018
Alphaproteobacteria
Roseomonas sp. M0104 [SNVJ]
859
784
-
Glu
TTC
[ENA]
¡û
>W2011685628
SRXO01000002
Alphaproteobacteria
Siccirubricoccus sp. 1-3 [SRXO]
74904
74829
-
Glu
TTC
[ENA]
¡û
>W2011993170
VDUZ01000041
Alphaproteobacteria
Enhydrobacter sp. CC-CFT640 [VDUZ]
18017
18092
+
Glu
TTC
[ENA]
¡û
>W2012102791
VOHA01000003
Alphaproteobacteria
Reyranella sp. CPCC 100927 [VOHA]
250159
250234
+
Glu
TTC
[ENA]
¡û
>W2012152281
VUKA01000006
Alphaproteobacteria
Roseomonas oryzae KCTC 42542 [VUKA]
23172
23097
-
Glu
TTC
[ENA]
¡û
>W2012332829
WIDQ01000003
Alphaproteobacteria
Niveispirillum sp. SYP-B3756 [WIDQ]
563091
563166
+
Glu
TTC
[ENA]
¡û
>W2012332866
WIDQ01000015
Alphaproteobacteria
Niveispirillum sp. SYP-B3756 [WIDQ]
101113
101188
+
Glu
TTC
[ENA]
¡û
>W2110024004
BMGN01000004
Alphaproteobacteria
Niveispirillum cyanobacteriorum CGMCC 1.12958 [BMGN]
476902
476827
-
Glu
TTC
[ENA]
¡û
>W2110028401
BMJZ01000007
Alphaproteobacteria
Elstera cyanobacteriorum CGMCC 1.15802 [BMJZ]
171730
171805
+
Glu
TTC
[ENA]
¡û
>W2110028830
BMKH01000047
Alphaproteobacteria
Siccirubricoccus deserti CGMCC 1.15936 [BMKH]
1711
1636
-
Glu
TTC
[ENA]
¡û
>W2110029404
BMKS01000008
Alphaproteobacteria
Caldovatus sediminis CGMCC 1.16330 [BMKS]
121175
121250
+
Glu
TTC
[ENA]
¡û
>W2110242825
JACOMF010000048
Alphaproteobacteria
Siccirubricoccus deserti SYSU D8009 [JACOMF]
20996
21071
+
Glu
TTC
[ENA]
¡û
>W2110264409
JACTNF010000003
Alphaproteobacteria
Roseomonas sp. 1311 [JACTNF]
121917
121992
+
Glu
TTC
[ENA]
¡û
>W2110264456
JACTNG010000003
Alphaproteobacteria
Roseomonas sp. 573 [JACTNG]
428001
428076
+
Glu
TTC
[ENA]
¡û
>W2110265950
JACTUZ010000168
Alphaproteobacteria
Roseomonas ludipueritiae DSM 14915 [JACTUZ]
3832
3757
-
Glu
TTC
[ENA]
¡û
>W2110265993
JACTVA010000085
Alphaproteobacteria
Roseomonas aerophila NBRC 108923 [JACTVA]
5847
5922
+
Glu
TTC
[ENA]
¡û
>W2110454153
JAETWB010000001
Alphaproteobacteria
Belnapia sp. T18 [JAETWB]
788925
789000
+
Glu
TTC
[ENA]
¡û
>W2110455913
JAEUXJ010000006
Alphaproteobacteria
Belnapia sp. T6 [JAEUXJ]
193431
193506
+
Glu
TTC
[ENA]
¡û
>W2110640645
JAHREN010000001
Alphaproteobacteria
Siccirubricoccus sp. G192 [JAHREN]
2639073
2638998
-
Glu
TTC
[ENA]
¡û
>W2110667919
JAHZUY010000059
Alphaproteobacteria
Caldovatus sp. SYSU G05006 [JAHZUY]
21022
20947
-
Glu
TTC
[ENA]
¡û
>C201252981
CP051775
Alphaproteobacteria
Rhodospirillaceae bacterium B3 [CP051775]
1227060
1227135
+
Glu
TTC
-
¡û
>C211142378
CP061091
Alphaproteobacteria
Roseomonas sp. 1318 [CP061091]
2769496
2769421
-
Glu
TTC
-
¡û
>C211143847
CP061177
Alphaproteobacteria
Roseomonas sp. 546 [CP061177]
2256597
2256672
+
Glu
TTC
-
¡û
>C211196879
CP064970
Alphaproteobacteria
Alphaproteobacteria bacterium [CP064970]
666607
666682
+
Glu
TTC
-
¡û
>W2110716825
JAJAQI010000020
Alphaproteobacteria
Roseicella sp. GB24 [JAJAQI]
57853
57928
+
Glu
TTC
[ENA]
¡û
>W2110754279
NRSG01000043
Alphaproteobacteria
Paracraurococcus ruber DSM 15382 [NRSG]
23643
23568
-
Glu
TTC
[ENA]
¡û
>W2110762772
RCVQ01000007
Alphaproteobacteria
Roseomonas sp. KE0001 [RCVQ]
57540
57465
-
Glu
TTC
[ENA]
¡û
>C231569972
CP115851
Alphaproteobacteria
Roseomonas cervicalis PL22-11A [CP115851]
1524167
1524242
+
Glu
TTC
-
¡û
>W10119149
ADVL01000183
Alphaproteobacteria
Pseudoroseomonas cervicalis ATCC 49957 [ADVL]
5673
5748
+
Glu
TTC
[ENA]
¡û
>W1511352891
JROR01000012
Alphaproteobacteria
Belnapia sp. F-4-1 [JROR]
53048
53123
+
Glu
TTC
[ENA]
¡û
>W11125369
ADVL01000183
Alphaproteobacteria
Pseudoroseomonas cervicalis ATCC 49957 [ADVL]
5673
5748
+
Glu
TTC
[ENA]
¡û
>W1511569440
LAJY01000193
Alphaproteobacteria
Elstera litoralis Dia-1 [LAJY]
6179
6254
+
Glu
TTC
[ENA]
¡û
>W121009555
AGEZ01000002
Alphaproteobacteria
Acetobacteraceae bacterium AT-5844 [AGEZ]
5660
5735
+
Glu
TTC
[ENA]
¡û
>W1610649016
LJHR01000004
Alphaproteobacteria
alpha proteobacterium AAP38 [LJHR]
130797
130722
-
Glu
TTC
[ENA]
¡û
>W1710510463
FMXZ01000001
Alphaproteobacteria
Belnapia rosea [FMXZ]
80567
80642
+
Glu
TTC
[ENA]
¡û
>W1710513101
FMZX01000007
Alphaproteobacteria
Belnapia rosea [FMZX]
115836
115761
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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