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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.260576 (105 seq.)
>W1710870168
LMKH01000023
Alphaproteobacteria
Sphingomonas sp. Leaf208 [LMKH]
466656
466581
-
Ala
GGC
[ENA]
¡û
>W1710870370
LMKL01000005
Alphaproteobacteria
Sphingomonas sp. Leaf17 [LMKL]
140886
140811
-
Ala
GGC
[ENA]
¡û
>W1710870463
LMKN01000008
Alphaproteobacteria
Sphingomonas sp. Leaf20 [LMKN]
515433
515508
+
Ala
GGC
[ENA]
¡û
>W1710870729
LMKT01000012
Alphaproteobacteria
Sphingomonas sp. Leaf226 [LMKT]
26669
26744
+
Ala
GGC
[ENA]
¡û
>W1710870884
LMKW01000008
Alphaproteobacteria
Sphingomonas sp. Leaf230 [LMKW]
135226
135151
-
Ala
GGC
[ENA]
¡û
>W1710870968
LMKX01000011
Alphaproteobacteria
Sphingomonas sp. Leaf28 [LMKX]
95684
95609
-
Ala
GGC
[ENA]
¡û
>W1710871025
LMKZ01000001
Alphaproteobacteria
Sphingomonas sp. Leaf30 [LMKZ]
897444
897519
+
Ala
GGC
[ENA]
¡û
>W1710871187
LMLC01000004
Alphaproteobacteria
Sphingomonas sp. Leaf34 [LMLC]
294756
294831
+
Ala
GGC
[ENA]
¡û
>W1710871222
LMLD01000010
Alphaproteobacteria
Sphingomonas sp. Leaf38 [LMLD]
97511
97436
-
Ala
GGC
[ENA]
¡û
>W1710872309
LMLW01000009
Alphaproteobacteria
Sphingomonas sp. Leaf242 [LMLW]
454766
454841
+
Ala
GGC
[ENA]
¡û
>W1710876755
LMPM01000002
Alphaproteobacteria
Sphingomonas sp. Leaf357 [LMPM]
178136
178061
-
Ala
GGC
[ENA]
¡û
>W1710877223
LMPX01000002
Alphaproteobacteria
Sphingomonas sp. Leaf198 [LMPX]
531592
531517
-
Ala
GGC
[ENA]
¡û
>W1710879458
LMRS01000001
Alphaproteobacteria
Sphingomonas sp. Leaf339 [LMRS]
162971
163046
+
Ala
GGC
[ENA]
¡û
>C171030390
CP014168
Alphaproteobacteria
Sphingomonas panacis DCY99 [CP014168]
3235552
3235627
+
Ala
GGC
-
¡û
>C191154778
CP037913
Alphaproteobacteria
Sphingomonas sp. AAP5 [CP037913]
1622964
1622889
-
Ala
GGC
-
¡û
>C191163742
CP039249
Alphaproteobacteria
Sphingomonas sp. PAMC26645 [CP039249]
1487669
1487744
+
Ala
GGC
-
¡û
>W141801042
JPDP01000599
Alphaproteobacteria
Sphingomonas sp. STIS6.2 [JPDP]
3328
3253
-
Ala
GGC
[ENA]
¡û
>W141805189
JPJC01000259
Alphaproteobacteria
Sphingomonas sp. FUKUSWIS1 [JPJC]
23676
23751
+
Ala
GGC
[ENA]
¡û
>W1810463409
PZZN01000001
Alphaproteobacteria
Sphingomonas aerolata NW12 [PZZN]
586907
586832
-
Ala
GGC
[ENA]
¡û
>W1810475073
QAIS01000591
Alphaproteobacteria
Sphingomonas sp. HMWF008 [QAIS]
3285
3210
-
Ala
GGC
[ENA]
¡û
>W1810476689
QAOF01000001
Alphaproteobacteria
Sphingomonas sp. PP-CE-3G-477 [QAOF]
438448
438523
+
Ala
GGC
[ENA]
¡û
>W1810476750
QAOG01000002
Alphaproteobacteria
Sphingomonas aurantiaca MA101b [QAOG]
234458
234533
+
Ala
GGC
[ENA]
¡û
>W1810486875
QAYE01000001
Alphaproteobacteria
Sphingomonas faeni MA-olki [QAYE]
616174
616249
+
Ala
GGC
[ENA]
¡û
>SRA1014185
SRR023845.32129
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
179
254
+
Ala
GGC
[SRA]
>SRA1014266
SRR023845.66547
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
156
81
-
Ala
GGC
[SRA]
>SRA1014290
SRR023845.75278
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
22
97
+
Ala
GGC
[SRA]
>SRA1014483
SRR023845.158513
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
80
5
-
Ala
GGC
[SRA]
>SRA1014604
SRR023845.222727
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
106
31
-
Ala
GGC
[SRA]
>SRA1014653
SRR023845.242062
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
166
91
-
Ala
GGC
[SRA]
>SRA1014787
SRR023845.315801
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
129
204
+
Ala
GGC
[SRA]
>SRA1015004
SRR023845.420751
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
168
93
-
Ala
GGC
[SRA]
>SRA1015028
SRR023845.426130
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
9
84
+
Ala
GGC
[SRA]
>SRA1015066
SRR023845.446333
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
59
134
+
Ala
GGC
[SRA]
>SRA1015074
SRR023845.448549
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
171
246
+
Ala
GGC
[SRA]
>SRA1015369
SRR023846.31998
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
81
6
-
Ala
GGC
[SRA]
>SRA1015497
SRR023846.84782
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
150
75
-
Ala
GGC
[SRA]
>SRA1015631
SRR023846.138386
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
230
155
-
Ala
GGC
[SRA]
>SRA1015694
SRR023846.160151
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
106
181
+
Ala
GGC
[SRA]
>SRA1015731
SRR023846.174727
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
173
98
-
Ala
GGC
[SRA]
>SRA1015887
SRR023846.242325
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
106
181
+
Ala
GGC
[SRA]
>SRA1015995
SRR023846.298349
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
81
6
-
Ala
GGC
[SRA]
>SRA1016072
SRR023846.337466
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
230
155
-
Ala
GGC
[SRA]
>SRA1016411
SRR023846.486238
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
106
181
+
Ala
GGC
[SRA]
>SRA1016478
SRR023846.520450
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
197
122
-
Ala
GGC
[SRA]
>W2010302908
CABVLI010000042
Alphaproteobacteria
Sphingomonas sp. EC-SD391 [CABVLI]
186572
186647
+
Ala
GGC
[ENA]
¡û
>W2010311820
CABWMY010000065
Alphaproteobacteria
Sphingomonas sp. T1 [CABWMY]
256279
256204
-
Ala
GGC
[ENA]
¡û
>W2010311935
CABWNA010000007
Alphaproteobacteria
Sphingomonas sp. AX6 [CABWNA]
823128
823053
-
Ala
GGC
[ENA]
¡û
>W2010369990
CAHJWJ010000023
Alphaproteobacteria
Sphingomonas bacterium [CAHJWJ]
51814
51889
+
Ala
GGC
[ENA]
¡û
>W2010533953
JAAOYQ010000001
Alphaproteobacteria
Sphingomonas aerolata AS2.4 [JAAOYQ]
466190
466115
-
Ala
GGC
[ENA]
¡û
>W2010720876
JACIAP010000008
Alphaproteobacteria
Sphingomonas sp. BK481 [JACIAP]
45121
45196
+
Ala
GGC
[ENA]
¡û
>W2011354879
RAPZ01000010
Alphaproteobacteria
Sphingomonas sp. PP-CC-1A-547 [RAPZ]
606434
606359
-
Ala
GGC
[ENA]
¡û
>W2011404448
RCWT01000009
Alphaproteobacteria
Sphingomonas sp. PP-F2F-G114-C0414 [RCWT]
570809
570884
+
Ala
GGC
[ENA]
¡û
>W2011404787
RCWY01000002
Alphaproteobacteria
Sphingomonas sp. PP-CE-3A-406 [RCWY]
531637
531562
-
Ala
GGC
[ENA]
¡û
>W2011407554
RCZC01000002
Alphaproteobacteria
Sphingomonas glacialis E6.1 [RCZC]
471453
471378
-
Ala
GGC
[ENA]
¡û
>W2011495080
RWKS01000009
Alphaproteobacteria
Sphingomonas sp. TF3 [RWKS]
123533
123608
+
Ala
GGC
[ENA]
¡û
>W2011536252
SCIN01000002
Alphaproteobacteria
Sphingomonas sp. UV9 [SCIN]
723122
723197
+
Ala
GGC
[ENA]
¡û
>W2011560410
SGIS01000032
Alphaproteobacteria
Sphingomonas sp. 3-7 [SGIS]
22707
22632
-
Ala
GGC
[ENA]
¡û
>W2011578901
SGXR01000004
Alphaproteobacteria
Sphingomonas sp. BK036 [SGXR]
240908
240983
+
Ala
GGC
[ENA]
¡û
>W2011619347
SLUY01000001
Alphaproteobacteria
Sphingomonas sp. PP-CC-3G-468 [SLUY]
606609
606534
-
Ala
GGC
[ENA]
¡û
>W2011623838
SLXW01000002
Alphaproteobacteria
Sphingomonas sp. PP-CE-1G-424 [SLXW]
514750
514825
+
Ala
GGC
[ENA]
¡û
>W2011624040
SLYA01000001
Alphaproteobacteria
Sphingomonas sp. PP-CE-1A-559 [SLYA]
499006
499081
+
Ala
GGC
[ENA]
¡û
>W2011624185
SLYD01000004
Alphaproteobacteria
Sphingomonas sp. PP-F2F-A104-K0414 [SLYD]
313763
313688
-
Ala
GGC
[ENA]
¡û
>W2011624287
SLYF01000007
Alphaproteobacteria
Sphingomonas sp. PP-CC-3A-396 [SLYF]
258195
258270
+
Ala
GGC
[ENA]
¡û
>W2012106762
VOQR01000001
Alphaproteobacteria
Sphingomonas ginsenosidivorax KHI67 [VOQR]
830150
830225
+
Ala
GGC
[ENA]
¡û
>W2110020680
BMDW01000011
Alphaproteobacteria
Sphingomonas psychrolutea CGMCC 1.10106 [BMDW]
114956
115031
+
Ala
GGC
[ENA]
¡û
>W2110051921
BNAQ01000001
Alphaproteobacteria
Sphingomonas glacialis CGMCC 1.8957 [BNAQ]
436345
436270
-
Ala
GGC
[ENA]
¡û
>W2110243495
JACONT010000006
Alphaproteobacteria
Sphingomonas albertensis DOAB 1063 [JACONT]
107127
107052
-
Ala
GGC
[ENA]
¡û
>W2110290238
JACYTY010000003
Alphaproteobacteria
Sphingomonas sp. CFBP 8765 CFBP8765 [JACYTY]
581625
581550
-
Ala
GGC
[ENA]
¡û
>W2110290276
JACYTZ010000001
Alphaproteobacteria
Sphingomonas sp. CFBP 8764 CFBP8764 [JACYTZ]
619261
619186
-
Ala
GGC
[ENA]
¡û
>W2110290865
JACYUP010000004
Alphaproteobacteria
Sphingomonas sp. CFBP 13733 CFBP13733 [JACYUP]
169190
169265
+
Ala
GGC
[ENA]
¡û
>W2110291010
JACYUS010000001
Alphaproteobacteria
Sphingomonas sp. CFBP 13728 CFBP13728 [JACYUS]
1132304
1132229
-
Ala
GGC
[ENA]
¡û
>W2110291613
JACYVG010000004
Alphaproteobacteria
Sphingomonas sp. CFBP 13714 CFBP13714 [JACYVG]
263372
263297
-
Ala
GGC
[ENA]
¡û
>W2110291791
JACYVM010000002
Alphaproteobacteria
Sphingomonas sp. CFBP 13706 CFBP13706 [JACYVM]
25721
25796
+
Ala
GGC
[ENA]
¡û
>W2110302286
JADBIA010000001
Alphaproteobacteria
Sphingomonas sp. CFBP 13603 CFBP13603 [JADBIA]
217010
217085
+
Ala
GGC
[ENA]
¡û
>W2110427266
JAELXS010000005
Alphaproteobacteria
Sphingomonas sp. BT553 [JAELXS]
175105
175030
-
Ala
GGC
[ENA]
¡û
>W2110554355
JAGIOU010000001
Alphaproteobacteria
Sphingomonas sp. PvP018 [JAGIOU]
3271765
3271840
+
Ala
GGC
[ENA]
¡û
>C211140898
CP061035
Alphaproteobacteria
Sphingomonas aliaeris [CP061035]
2437290
2437215
-
Ala
GGC
-
¡û
>C231230478
CP086594
Alphaproteobacteria
Sphingomonas radiodurans S9-5 [CP086594]
3415377
3415452
+
Ala
GGC
-
¡û
>C231406172
CP098762
Alphaproteobacteria
Sphingomonas aerolata PDD-32b-11 [CP098762]
1006342
1006417
+
Ala
GGC
-
¡û
>C231441503
CP101740
Alphaproteobacteria
Sphingomonas qomolangmaensis S5-59 [CP101740]
1387033
1386958
-
Ala
GGC
-
¡û
>C231463764
CP103057
Alphaproteobacteria
Sphingomonas sp. ZFBP2030 [CP103057]
3863602
3863677
+
Ala
GGC
-
¡û
>C231536484
CP110678
Alphaproteobacteria
Sphingomonas sp. S1-29 [CP110678]
1023160
1023085
-
Ala
GGC
-
¡û
>C241006597
AP022672
Alphaproteobacteria
Sphingomonas sp. HMP6 [AP022672]
1199587
1199512
-
Ala
GGC
-
¡û
>C241006636
AP022673
Alphaproteobacteria
Sphingomonas sp. HMP9 [AP022673]
3805601
3805676
+
Ala
GGC
-
¡û
>W1511352572
JROH01000027
Alphaproteobacteria
Sphingomonas sp. 37zxx [JROH]
960
885
-
Ala
GGC
[ENA]
¡û
>W1511357037
JRVI01000003
Alphaproteobacteria
Sphingomonas sp. Ant20 [JRVI]
45886
45961
+
Ala
GGC
[ENA]
¡û
>W121031776
AHHA01000035
Alphaproteobacteria
Sphingomonas sp. PAMC 26617 [AHHA]
75626
75551
-
Ala
GGC
[ENA]
¡û
>W121033220
AHIR01000006
Alphaproteobacteria
Sphingomonas echinoides ATCC 14820 [AHIR]
9693
9768
+
Ala
GGC
[ENA]
¡û
>W121033297
AHIS01000100
Alphaproteobacteria
Sphingomonas sp. PAMC 26605 [AHIS]
5906
5831
-
Ala
GGC
[ENA]
¡û
>W121046819
AIDW01000019
Alphaproteobacteria
Sphingomonas sp. PAMC 26621 [AIDW]
137614
137539
-
Ala
GGC
[ENA]
¡û
>W1610732514
LMKH01000023
Alphaproteobacteria
Sphingomonas sp. Leaf208 [LMKH]
466656
466581
-
Ala
GGC
[ENA]
¡û
>W1610732716
LMKL01000005
Alphaproteobacteria
Sphingomonas sp. Leaf17 [LMKL]
140886
140811
-
Ala
GGC
[ENA]
¡û
>W1610732809
LMKN01000008
Alphaproteobacteria
Sphingomonas sp. Leaf20 [LMKN]
515433
515508
+
Ala
GGC
[ENA]
¡û
>W1610733075
LMKT01000012
Alphaproteobacteria
Sphingomonas sp. Leaf226 [LMKT]
26669
26744
+
Ala
GGC
[ENA]
¡û
>W1610733230
LMKW01000008
Alphaproteobacteria
Sphingomonas sp. Leaf230 [LMKW]
135226
135151
-
Ala
GGC
[ENA]
¡û
>W1610733314
LMKX01000011
Alphaproteobacteria
Sphingomonas sp. Leaf28 [LMKX]
95684
95609
-
Ala
GGC
[ENA]
¡û
>W1610733371
LMKZ01000001
Alphaproteobacteria
Sphingomonas sp. Leaf30 [LMKZ]
897444
897519
+
Ala
GGC
[ENA]
¡û
>W1610733533
LMLC01000004
Alphaproteobacteria
Sphingomonas sp. Leaf34 [LMLC]
294756
294831
+
Ala
GGC
[ENA]
¡û
>W1610733568
LMLD01000010
Alphaproteobacteria
Sphingomonas sp. Leaf38 [LMLD]
97511
97436
-
Ala
GGC
[ENA]
¡û
>W1610734655
LMLW01000009
Alphaproteobacteria
Sphingomonas sp. Leaf242 [LMLW]
454766
454841
+
Ala
GGC
[ENA]
¡û
>W1610739101
LMPM01000002
Alphaproteobacteria
Sphingomonas sp. Leaf357 [LMPM]
178136
178061
-
Ala
GGC
[ENA]
¡û
>W1610739569
LMPX01000002
Alphaproteobacteria
Sphingomonas sp. Leaf198 [LMPX]
531592
531517
-
Ala
GGC
[ENA]
¡û
>W1610741804
LMRS01000001
Alphaproteobacteria
Sphingomonas sp. Leaf339 [LMRS]
162971
163046
+
Ala
GGC
[ENA]
¡û
>W1710509100
FMWX01000001
Alphaproteobacteria
Sphingomonas sp. NFR15 [FMWX]
102906
102831
-
Ala
GGC
[ENA]
¡û
>W1710571536
FOVZ01000005
Alphaproteobacteria
Sphingomonas sp. OK281 [FOVZ]
385458
385533
+
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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