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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.260895 (106 seq.)
>W1710857633
LMAK01000076
Bacteroidota
Formosa algae [LMAK]
42850
42775
-
Gln
TTG
[ENA]
¡û
>W1711206650
LXEI01000001
Bacteroidota
Tamlana agarivorans [LXEI]
519808
519733
-
Gln
TTG
[ENA]
¡û
>WENV011787
AACY020321084
Marine microbial communities from Global Ocean Sampling (GOS)
975
1052
+
Gln
TTG
[ENA]
>WENV180109943
OAPL01014627
[OAPL] marine metagenome; ENVO:00002010 for 'seawater
193
266
+
Gln
TTG
[ENA]
¡û
>WENV180383130
OBOU01002593
[OBOU] marine metagenome; ENV:00002010
294
367
+
Gln
TTG
[ENA]
¡û
>WENV180383150
OBOU01003910
[OBOU] marine metagenome; ENV:00002010
88
15
-
Gln
TTG
[ENA]
¡û
>WENV180383693
OBOV01007926
[OBOV] marine metagenome; ENV:00002010
614
541
-
Gln
TTG
[ENA]
¡û
>WENV180383721
OBOV01011348
[OBOV] marine metagenome; ENV:00002010
115
42
-
Gln
TTG
[ENA]
¡û
>WENV180395664
OBPT01070290
[OBPT] marine metagenome; ENVO:00002010 seawater
33
106
+
Gln
TTG
[ENA]
¡û
>WENV180397870
OBPZ01018828
[OBPZ] marine metagenome; ENVO:00002010
443
370
-
Gln
TTG
[ENA]
¡û
>WENV181325873
OFLJ01039812
[OFLJ] seawater metagenome; seawater
94
167
+
Gln
TTG
[ENA]
¡û
>WENV181393091
OFRX01044125
[OFRX] seawater metagenome; seawater
77
150
+
Gln
TTG
[ENA]
¡û
>WENV182540867
OJAQ01000180
[OJAQ] seawater metagenome; Sea water
9768
9841
+
Gln
TTG
[ENA]
¡û
>WENV182544969
OJBL01001236
[OJBL] seawater metagenome; Sea water
51
124
+
Gln
TTG
[ENA]
¡û
>WENV182549005
OJBX01005850
[OJBX] seawater metagenome; Sea water
816
889
+
Gln
TTG
[ENA]
¡û
>WENV182553393
OJCR01003147
[OJCR] seawater metagenome; Sea water
4789
4716
-
Gln
TTG
[ENA]
¡û
>WENV182555238
OJCY01018486
[OJCY] seawater metagenome; Sea water
576
503
-
Gln
TTG
[ENA]
¡û
>WENV182556346
OJDG01004992
[OJDG] seawater metagenome; Sea water
764
837
+
Gln
TTG
[ENA]
¡û
>WENV182557810
OJDL01000034
[OJDL] seawater metagenome; Sea water
55039
55112
+
Gln
TTG
[ENA]
¡û
>WENV182558407
OJDM01001609
[OJDM] seawater metagenome; Sea water
2096
2023
-
Gln
TTG
[ENA]
¡û
>WENV182559354
OJDO01024420
[OJDO] seawater metagenome; Sea water
454
381
-
Gln
TTG
[ENA]
¡û
>WENV182561949
OJDY01000241
[OJDY] seawater metagenome; Sea water
5000
5073
+
Gln
TTG
[ENA]
¡û
>WENV182562768
OJEA01001451
[OJEA] seawater metagenome; Sea water
2518
2445
-
Gln
TTG
[ENA]
¡û
>WENV182564102
OJEE01000143
[OJEE] seawater metagenome; Sea water
1995
1922
-
Gln
TTG
[ENA]
¡û
>WENV182564469
OJEF01000350
[OJEF] seawater metagenome; Sea water
10376
10449
+
Gln
TTG
[ENA]
¡û
>WENV182565399
OJEH01003830
[OJEH] seawater metagenome; Sea water
2086
2159
+
Gln
TTG
[ENA]
¡û
>WENV182569065
OJEY01000288
[OJEY] seawater metagenome; Sea water
3411
3484
+
Gln
TTG
[ENA]
¡û
>WENV182569466
OJEZ01000662
[OJEZ] seawater metagenome; Sea water
344
417
+
Gln
TTG
[ENA]
¡û
>WENV182569809
OJFB01000652
[OJFB] seawater metagenome; Sea water
2808
2881
+
Gln
TTG
[ENA]
¡û
>WENV182573523
OJFP01003225
[OJFP] seawater metagenome; Sea water
546
619
+
Gln
TTG
[ENA]
¡û
>WENV182574832
OJFS01003099
[OJFS] seawater metagenome; Sea water
595
668
+
Gln
TTG
[ENA]
¡û
>WENV182576351
OJFX01013025
[OJFX] seawater metagenome; Sea water
1523
1596
+
Gln
TTG
[ENA]
¡û
>WENV182576759
OJFY01005580
[OJFY] seawater metagenome; Sea water
623
696
+
Gln
TTG
[ENA]
¡û
>WENV182579545
OJGS01020887
[OJGS] seawater metagenome; Sea water
608
535
-
Gln
TTG
[ENA]
¡û
>WENV182580595
OJGW01004063
[OJGW] seawater metagenome; Sea water
2457
2384
-
Gln
TTG
[ENA]
¡û
>WENV182581527
OJGX01011654
[OJGX] seawater metagenome; Sea water
1022
1095
+
Gln
TTG
[ENA]
¡û
>WENV182582289
OJHA01002792
[OJHA] seawater metagenome; Sea water
937
1010
+
Gln
TTG
[ENA]
¡û
>WENV182582608
OJHB01003067
[OJHB] seawater metagenome; Sea water
1248
1321
+
Gln
TTG
[ENA]
¡û
>WENV182583237
OJHD01001367
[OJHD] seawater metagenome; Sea water
3655
3728
+
Gln
TTG
[ENA]
¡û
>WENV182587719
OJHN01002325
[OJHN] seawater metagenome; Sea water
1353
1280
-
Gln
TTG
[ENA]
¡û
>WENV182589939
OJIG01012179
[OJIG] seawater metagenome; Sea water
52
125
+
Gln
TTG
[ENA]
¡û
>WENV182594011
OJIV01000050
[OJIV] seawater metagenome; Sea water
49770
49697
-
Gln
TTG
[ENA]
¡û
>WENV183054423
OLGT01007223
[OLGT] seawater metagenome; Sea water
219
146
-
Gln
TTG
[ENA]
¡û
>WENV183054670
OLGU01000988
[OLGU] seawater metagenome; Sea water
5357
5284
-
Gln
TTG
[ENA]
¡û
>WENV183054991
OLGW01000335
[OLGW] seawater metagenome; Sea water
1570
1643
+
Gln
TTG
[ENA]
¡û
>WENV183058128
OLHN01006663
[OLHN] seawater metagenome; Sea water
754
681
-
Gln
TTG
[ENA]
¡û
>WENV183058724
OLHR01006730
[OLHR] seawater metagenome; Sea water
63
136
+
Gln
TTG
[ENA]
¡û
>WENV183059305
OLHU01000531
[OLHU] seawater metagenome; Sea water
1491
1564
+
Gln
TTG
[ENA]
¡û
>WENV183060316
OLHX01002241
[OLHX] seawater metagenome; Sea water
778
851
+
Gln
TTG
[ENA]
¡û
>WENV183060645
OLHY01001205
[OLHY] seawater metagenome; Sea water
4541
4468
-
Gln
TTG
[ENA]
¡û
>WENV183061238
OLHZ01001687
[OLHZ] seawater metagenome; Sea water
2441
2368
-
Gln
TTG
[ENA]
¡û
>WENV183619656
OOFQ01027739
[OOFQ] marine metagenome; seawater
506
433
-
Gln
TTG
[ENA]
¡û
>WENV183620753
OOFS01027968
[OOFS] marine metagenome; sea ice
110
183
+
Gln
TTG
[ENA]
¡û
>WENV183629288
OOGP01016991
[OOGP] marine metagenome; seawater
560
487
-
Gln
TTG
[ENA]
¡û
>WENV170170238
CEOP01422051
[CEOP] marine metagenome genome assembly TARA_009_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
120
193
+
Gln
TTG
[ENA]
¡û
>WENV170326441
CESU01001456
[CESU] marine metagenome genome assembly TARA_082_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
3754
3679
-
Gln
TTG
[ENA]
¡û
>WENV170326696
CESU01014725
[CESU] marine metagenome genome assembly TARA_082_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
46804
46879
+
Gln
TTG
[ENA]
¡û
>WENV170568705
FLMP01068298
[FLMP] seawater metagenome; seawater
861
936
+
Gln
TTG
[ENA]
¡û
>WENV170609885
FUWD011556986
[FUWD] metagenome; unknown
103
28
-
Gln
TTG
[ENA]
¡û
>WENV170816008
MDSX01021984
[MDSX] marine metagenome; seawater
4
79
+
Gln
TTG
[ENA]
¡û
>WENV170817869
MDSX01058708
[MDSX] marine metagenome; seawater
4002
4077
+
Gln
TTG
[ENA]
¡û
>WENV170818201
MDSX01065758
[MDSX] marine metagenome; seawater
2971
2896
-
Gln
TTG
[ENA]
¡û
>WENV170828416
MDSY01149650
[MDSY] marine metagenome; seawater
56039
55964
-
Gln
TTG
[ENA]
¡û
>WENV170924707
MDTG01070290
[MDTG] marine metagenome; seawater
3026
2951
-
Gln
TTG
[ENA]
¡û
>WENV170935042
MDTG01249776
[MDTG] marine metagenome; seawater
6
81
+
Gln
TTG
[ENA]
¡û
>WENV170953947
MEHZ011680362
[MEHZ] marine metagenome; marine surface water
227
302
+
Gln
TTG
[ENA]
¡û
>C181069066
CP022585
Bacteroidota
Candidatus Fluviicola riflensis [CP022585]
3709223
3709150
-
Gln
TTG
-
¡û
>W09110713
ABVV01000002
Bacteroidota
Flavobacteria bacterium MS024-2A [ABVV]
201595
201670
+
Gln
TTG
[ENA]
¡û
>W1910695541
MDVN01000003
Bacteroidota
Gaetbulibacter sp. 4G1 [MDVN]
52492
52565
+
Gln
TTG
[ENA]
¡û
>W1910728320
MGWN01000014
Bacteroidota
Fluviicola sp. RIFCSPHIGHO2_12_FULL_43_24 [MGWN]
396273
396200
-
Gln
TTG
[ENA]
¡û
>W1910758249
MLJY01000001
Bacteroidota
Formosa algae KMM 8021 [MLJY]
32819
32746
-
Gln
TTG
[ENA]
¡û
>W1810588104
QFRI01000001
Bacteroidota
Algibacter marinivivus ZY111 [QFRI]
1415614
1415687
+
Gln
TTG
[ENA]
¡û
>W1810591978
QFWS01000006
Bacteroidota
Flavobacteriaceae bacterium LYZ1037 LYZ1037 [QFWS]
209098
209025
-
Gln
TTG
[ENA]
¡û
>W1810596530
QGGP01000001
Bacteroidota
Xanthomarina spongicola DSM 22637 [QGGP]
646492
646565
+
Gln
TTG
[ENA]
¡û
>WENV030537
AACY021289816
Marine microbial communities from Global Ocean Sampling (GOS)
648
571
-
Gln
TTG
[ENA]
>W2010597148
JABFDE010000007
Bacteroidota
Winogradskyella sp. Ha767 [JABFDE]
223079
223152
+
Gln
TTG
[ENA]
¡û
>W2010700732
JACHGD010000001
Bacteroidota
Lacinutrix iliipiscaria DSM 26284 [JACHGD]
239226
239153
-
Gln
TTG
[ENA]
¡û
>W2010700759
JACHGE010000001
Bacteroidota
Algibacter amylolyticus DSM 29199 [JACHGE]
586060
585987
-
Gln
TTG
[ENA]
¡û
>W2010829134
MDVN01000003
Bacteroidota
Gaetbulibacter sp. 4G1 [MDVN]
52492
52565
+
Gln
TTG
[ENA]
¡û
>W2010861749
MGWN01000014
Bacteroidota
Fluviicola sp. RIFCSPHIGHO2_12_FULL_43_24 [MGWN]
396273
396200
-
Gln
TTG
[ENA]
¡û
>W2010886802
MLJY01000001
Bacteroidota
Formosa algae KMM 8021 [MLJY]
32819
32746
-
Gln
TTG
[ENA]
¡û
>W2011413376
REFV01000008
Bacteroidota
Dokdonia sp. SH27 [REFV]
60125
60052
-
Gln
TTG
[ENA]
¡û
>SRA1045627
SRR035093.136296
454 Sequencing (SRP001814)
466
391
-
Gln
TTG
[SRA]
>W2012102721
VOGY01000008
Bacteroidota
Algibacter sp. H164 [VOGY]
131209
131136
-
Gln
TTG
[ENA]
¡û
>W2110047079
BMWZ01000002
Bacteroidota
Algibacter mikhailovii KCTC 12710 [BMWZ]
320021
319948
-
Gln
TTG
[ENA]
¡û
>W2110234632
JACLAF010000006
Bacteroidota
Tamlana sp. I1 [JACLAF]
175789
175716
-
Gln
TTG
[ENA]
¡û
>W2110537856
JAGGJQ010000001
Bacteroidota
Formosa algae DSM 15523 [JAGGJQ]
325418
325345
-
Gln
TTG
[ENA]
¡û
>W2110611072
JAHKPD010000012
Bacteroidota
Tamlana agarivorans I2M19 [JAHKPD]
192432
192505
+
Gln
TTG
[ENA]
¡û
>W2110716637
JAJAPW010000006
Bacteroidota
Tamlana sp. PT2-4 [JAJAPW]
127306
127379
+
Gln
TTG
[ENA]
¡û
>C231312669
CP092099
Bacteroidota
Sabulilitoribacter sp. BrNp1-15 [CP092099]
83995
83922
-
Gln
TTG
-
¡û
>C241048376
CP039456
Bacteroidota
Changchengzhania lutea SM1355 [CP039456]
2142226
2142299
+
Gln
TTG
-
¡û
>C241114998
CP047028
Bacteroidota
Formosa sp. L2A11 [CP047028]
861243
861170
-
Gln
TTG
-
¡û
>C241155510
CP053350
Bacteroidota
Winogradskyella forsetii SW133 [CP053350]
2803861
2803788
-
Gln
TTG
-
¡û
>C241360063
CP141266
Bacteroidota
Flavivirga abyssicola MEBiC07777 [CP141266]
2255983
2256056
+
Gln
TTG
-
¡û
>C11109420
CP002542
Bacteroidota
Fluviicola taffensis DSM 16823 [CP002542]
1226478
1226405
-
Gln
TTG
[Ensembl]
¡û
>C11109421
CP002542
Bacteroidota
Fluviicola taffensis DSM 16823 [CP002542]
1219230
1219157
-
Gln
TTG
[Ensembl]
¡û
>WENV055424
AACY023226601
Marine microbial communities from Global Ocean Sampling (GOS)
928
1005
+
Gln
TTG
[ENA]
>C161047077
CP012898
Bacteroidota
Pseudalgibacter alginicilyticus HZ22 [CP012898]
2151070
2151145
+
Gln
TTG
[Ensembl]
¡û
>C161105062
HG315671
Bacteroidota
Formosa agariphila KMM 3901 type strain: KMM 3901 [HG315671]
272530
272605
+
Gln
TTG
[Ensembl]
¡û
>W1610026001
AUYN01000007
Bacteroidota
Wocania ichthyoenteri Th78 [AUYN]
432194
432269
+
Gln
TTG
[ENA]
¡û
>W1610626351
LICC01000005
Bacteroidota
Cryomorphaceae bacterium BACL21 MAG-121220-bin10 [LICC]
2497
2422
-
Gln
TTG
[ENA]
¡û
>W1610720014
LMAK01000076
Bacteroidota
Formosa algae [LMAK]
42850
42775
-
Gln
TTG
[ENA]
¡û
>W1710022050
AUYN01000007
Bacteroidota
Wocania ichthyoenteri Th78 [AUYN]
432194
432269
+
Gln
TTG
[ENA]
¡û
>W1710559026
FOMI01000001
Bacteroidota
Algibacter pectinivorans [FOMI]
548576
548649
+
Gln
TTG
[ENA]
¡û
>W1710582203
FPKV01000001
Bacteroidota
Flaviramulus basaltis [FPKV]
1180494
1180569
+
Gln
TTG
[ENA]
¡û
>W1710757478
LICC01000005
Bacteroidota
Cryomorphaceae bacterium BACL21 MAG-121220-bin10 [LICC]
2497
2422
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK