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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.262050 (26 seq.)
>C171131426
LT828648
Nitrospirota
Nitrospira japonica [LT828648]
2715001
2714926
-
Met
CAT
-
¡û
>WENV180295637
OBIZ01197287
[OBIZ] soil metagenome; soil
92
17
-
Met
CAT
[ENA]
¡û
>WENV180327290
OBKT01035907
[OBKT] soil metagenome; soil
128
53
-
Met
CAT
[ENA]
¡û
>WENV180353342
OBLQ010703811
[OBLQ] soil metagenome; soil
218
293
+
Met
CAT
[ENA]
¡û
>WENV180691674
OCZS010182020
[OCZS] soil metagenome; soil
166
91
-
Met
CAT
[ENA]
¡û
>WENV181164791
OEIR01368851
[OEIR] soil metagenome; soil
110
35
-
Met
CAT
[ENA]
¡û
>WENV170555678
CXWL01001713
[CXWL] groundwater metagenome; biofilm material
25895
25820
-
Met
CAT
[ENA]
¡û
>WENV170565737
FKKE01000334
[FKKE] freshwater metagenome; freshwater
17732
17807
+
Met
CAT
[ENA]
¡û
>WENV170565996
FKKE01003632
[FKKE] freshwater metagenome; freshwater
649
574
-
Met
CAT
[ENA]
¡û
>WENV170566376
FKKE01020977
[FKKE] freshwater metagenome; freshwater
3979
3904
-
Met
CAT
[ENA]
¡û
>WENV170566380
FKKE01021213
[FKKE] freshwater metagenome; freshwater
761
686
-
Met
CAT
[ENA]
¡û
>WENV170577382
FRDC01005046
[FRDC] freshwater metagenome; water
6010
5935
-
Met
CAT
[ENA]
¡û
>W1910204768
FJVN01000144
Nitrospirota
Nitrospira cf. moscoviensis SBR1015 [FJVN]
649
574
-
Met
CAT
[ENA]
¡û
>W1910441975
FWEX01000006
Nitrospirota
Nitrospira sp. ND1 [FWEX]
3130159
3130084
-
Met
CAT
[ENA]
¡û
>SRA1001939
SRR001308.140926
Metagenomic characterization of a wastewater treatment plant (SRP000180)
131
206
+
Met
CAT
[SRA]
>C151086620
CP011801
Nitrospirota
Nitrospira moscoviensis NSP M-1 [CP011801]
1445784
1445709
-
Met
CAT
-
¡û
>W2010405400
FWEX01000006
Nitrospirota
Nitrospira sp. ND1 [FWEX]
3130159
3130084
-
Met
CAT
[ENA]
¡û
>W2010865088
MHEV01000916
Nitrospirota
Nitrospirae bacterium RIFCSPLOWO2_12_FULL_63_8 [MHEV]
165
240
+
Met
CAT
[ENA]
¡û
>W2110115338
CAJNBJ010000018
Nitrospirota
Nitrospira defluvii [CAJNBJ]
37702
37777
+
Met
CAT
[ENA]
¡û
>C211095988
CP054184
Nitrospirota
Nitrospira sp. [CP054184]
826580
826655
+
Met
CAT
-
¡û
>C241006558
AP022671
Nitrospirota
Nitrospira sp. KM1 [AP022671]
174079
174004
-
Met
CAT
-
¡û
>C241267237
CP126121
Nitrospirota
Nitrospira sp. [CP126121]
3921650
3921575
-
Met
CAT
-
¡û
>C241267261
CP126123
Nitrospirota
Nitrospira sp. [CP126123]
1312372
1312447
+
Met
CAT
-
¡û
>C241387569
OX365700
Nitrospirota
Nitrospira sp. DNF [OX365700]
2037734
2037659
-
Met
CAT
-
¡û
>W1610574643
JZQY01000009
Nitrospirota
Nitrospira sp. OLB3 [JZQY]
19044
19119
+
Met
CAT
[ENA]
¡û
>W1710691878
JZQY01000009
Nitrospirota
Nitrospira sp. OLB3 [JZQY]
19044
19119
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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