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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.26267 (65 seq.)
>W1710785598
LJHZ01000081
Alphaproteobacteria
Novosphingobium sp. AAP93 [LJHZ]
12330
12241
-
Ser
TGA
[ENA]
¡û
>W1710867159
LMIB01000001
Alphaproteobacteria
Sphingomonas sp. Root710 [LMIB]
867012
867101
+
Ser
TGA
[ENA]
¡û
>W1710868117
LMIV01000001
Alphaproteobacteria
Sphingomonas sp. Root241 [LMIV]
1503154
1503065
-
Ser
TGA
[ENA]
¡û
>W1710869752
LMJY01000022
Alphaproteobacteria
Novosphingobium sp. Leaf2 [LMJY]
100028
100117
+
Ser
TGA
[ENA]
¡û
>W1711353149
MDDS01000081
Alphaproteobacteria
Sphingomonas turrisvirgatae MCT13 [MDDS]
62388
62299
-
Ser
TGA
[ENA]
¡û
>W1711501465
MKRR01000111
Alphaproteobacteria
Sphingomonas sp. 66-10 [MKRR]
45490
45579
+
Ser
TGA
[ENA]
¡û
>C171095083
CP019511
Alphaproteobacteria
Sphingomonas sp. LM7 [CP019511]
985736
985647
-
Ser
TGA
-
¡û
>W131237441
AUOL01000183
Alphaproteobacteria
Sphingomonas sp. JGI 0001003-D23 [AUOL]
1264
1175
-
Ser
TGA
[ENA]
¡û
>WENV180020497
FTCZ01004884
[FTCZ] metagenome; soil
1673
1762
+
Ser
TGA
[ENA]
¡û
>WENV180022433
FTGF01000331
[FTGF] metagenome; soil
657
746
+
Ser
TGA
[ENA]
¡û
>WENV181192668
OEPS010898057
[OEPS] soil metagenome; soil
128
217
+
Ser
TGA
[ENA]
¡û
>WENV181401325
OFSF01124462
[OFSF] wastewater metagenome; Exp Tend VB 100WW
208
119
-
Ser
TGA
[ENA]
¡û
>WENV181402329
OFTY01000637
[OFTY] sludge metagenome; sludge
14005
14094
+
Ser
TGA
[ENA]
¡û
>WENV170002837
AGTN01144116
[AGTN] bioreactor metagenome; poplar biomass
388
299
-
Ser
TGA
[ENA]
¡û
>WENV170010542
APMI01019919
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
9423
9512
+
Ser
TGA
[ENA]
¡û
>WENV170564977
CZQE01000026
[CZQE] hydrothermal vent metagenome; ocean water
6739
6650
-
Ser
TGA
[ENA]
¡û
>WENV170574205
FLYM01013498
[FLYM] hot springs metagenome; Sediment
1489
1400
-
Ser
TGA
[ENA]
¡û
>W141452327
JFBW01000002
Alphaproteobacteria
Sphingomonas jaspsi DSM 18422 [JFBW]
1711329
1711240
-
Ser
TGA
[ENA]
¡û
>WENV170736415
LULM01002731
[LULM] marine metagenome; Red Sea water column Station 149 - depth 200m
2104
2015
-
Ser
TGA
[ENA]
¡û
>WENV170996309
MWWF01211698
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
250
161
-
Ser
TGA
[ENA]
¡û
>C181081601
CP023449
Alphaproteobacteria
Rhizorhabdus dicambivorans Ndbn-20 [CP023449]
2833731
2833820
+
Ser
TGA
-
¡û
>C181108655
CP024923
Alphaproteobacteria
Sphingomonas psychrotolerans Cra20 [CP024923]
1020902
1020813
-
Ser
TGA
-
¡û
>W141779840
JOOE01000001
Alphaproteobacteria
Sphingomonas sp. UNC305MFCol5.2 [JOOE]
246008
246097
+
Ser
TGA
[ENA]
¡û
>W1911398118
NWMW01000001
Alphaproteobacteria
Sphingomonas spermidinifaciens 9NM-10 [NWMW]
194463
194374
-
Ser
TGA
[ENA]
¡û
>W1911411145
NWUF01000008
Alphaproteobacteria
Rhizorhabdus dicambivorans Ndbn-20m [NWUF]
133927
133838
-
Ser
TGA
[ENA]
¡û
>W1911783348
QXTF01000001
Alphaproteobacteria
Sphingomonas sp. DAC4 [QXTF]
198498
198587
+
Ser
TGA
[ENA]
¡û
>W1810000671
BEWM01000003
Alphaproteobacteria
Gluconobacter cerinus NBRC 3267 [BEWM]
46274
46185
-
Ser
TGA
[ENA]
¡û
>W1810000720
BEWN01000004
Alphaproteobacteria
Gluconobacter frateurii NBRC 3264 [BEWN]
11549
11460
-
Ser
TGA
[ENA]
¡û
>W1810000731
BEWO01000002
Alphaproteobacteria
Gluconobacter japonicus NBRC 3271 [BEWO]
232205
232294
+
Ser
TGA
[ENA]
¡û
>SRA1003859
SRR002327.238762
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
97
186
+
Ser
TGA
[SRA]
>W1810390329
PXYJ01000001
Alphaproteobacteria
Allosphingosinicella vermicomposti KCTC 22446 [PXYJ]
982729
982640
-
Ser
TGA
[ENA]
¡û
>W1810475046
QAIS01000093
Alphaproteobacteria
Sphingomonas sp. HMWF008 [QAIS]
243
332
+
Ser
TGA
[ENA]
¡û
>W1810538531
QDFY01000001
Alphaproteobacteria
Sphingosinicella terrae KCTC 52780 [QDFY]
662797
662708
-
Ser
TGA
[ENA]
¡û
>W1810597604
QGHL01000007
Alphaproteobacteria
Novosphingobium meiothermophilum SYSU G00007 [QGHL]
494340
494429
+
Ser
TGA
[ENA]
¡û
>W2010526893
JAANYY010000002
Alphaproteobacteria
Sphingopyxis sp. Z10-6 [JAANYY]
947485
947396
-
Ser
TGA
[ENA]
¡û
>W2010559858
JAASQM010000001
Alphaproteobacteria
Sphingomonas naasensis DSM 100060 [JAASQM]
3155
3066
-
Ser
TGA
[ENA]
¡û
>W2010635749
JABULH010000001
Alphaproteobacteria
Sphingomonas sp. HHU CXW [JABULH]
934065
934154
+
Ser
TGA
[ENA]
¡û
>W2010675505
JACCGB010000001
Alphaproteobacteria
Novosphingobium sp. B11G3A [JACCGB]
1219936
1220025
+
Ser
TGA
[ENA]
¡û
>W2010697961
JACHDW010000001
Alphaproteobacteria
Sphingobium sp. B10D3D [JACHDW]
1948641
1948552
-
Ser
TGA
[ENA]
¡û
>W2010731627
JACIJF010000001
Alphaproteobacteria
Sphingomonas xinjiangensis DSM 26736 [JACIJF]
388293
388204
-
Ser
TGA
[ENA]
¡û
>W2011134926
NWMW01000001
Alphaproteobacteria
Sphingomonas spermidinifaciens 9NM-10 [NWMW]
194463
194374
-
Ser
TGA
[ENA]
¡û
>W2011137847
NWUF01000008
Alphaproteobacteria
Rhizorhabdus dicambivorans Ndbn-20m [NWUF]
133927
133838
-
Ser
TGA
[ENA]
¡û
>W2011333034
QXTF01000001
Alphaproteobacteria
Sphingomonas sp. DAC4 [QXTF]
198498
198587
+
Ser
TGA
[ENA]
¡û
>W2011374112
RBIU01000001
Alphaproteobacteria
Sphingomonas elodea 18a [RBIU]
3132278
3132367
+
Ser
TGA
[ENA]
¡û
>W2011685854
SRXT01000001
Alphaproteobacteria
Sphingomonas gei ZFGT-11 [SRXT]
543985
543896
-
Ser
TGA
[ENA]
¡û
>W2012022427
VFPZ01000001
Alphaproteobacteria
Sphingomonas trueperi 1152a [VFPZ]
542135
542046
-
Ser
TGA
[ENA]
¡û
>W2110263389
JACTGR010000001
Alphaproteobacteria
Sphingomonas sp. JC676 [JACTGR]
1067148
1067237
+
Ser
TGA
[ENA]
¡û
>C211137707
CP060718
Alphaproteobacteria
Sphingomonas lutea KCTC 23642 [CP060718]
1552555
1552644
+
Ser
TGA
-
¡û
>C211388421
CP081848
Alphaproteobacteria
Polymorphobacter sp. PAMC 29362 [CP081848]
2951333
2951244
-
Ser
TGA
-
¡û
>C211397914
CP082839
Alphaproteobacteria
Sphingomonas sp. AK-PDB1-5 [CP082839]
2179660
2179748
+
Ser
TGA
-
¡û
>C231406602
CP098774
Alphaproteobacteria
Sphingomonas sp. QA11 [CP098774]
1818567
1818656
+
Ser
TGA
-
¡û
>C231571793
CP115960
Alphaproteobacteria
Sphingomonas sp. 7/4-4 [CP115960]
885389
885478
+
Ser
TGA
-
¡û
>C241058997
CP041659
Alphaproteobacteria
Sphingomonas xanthus AE3 [CP041659]
147747
147836
+
Ser
TGA
-
¡û
>C241131779
CP048817
Alphaproteobacteria
Sphingomonas sp. So64.6b [CP048817]
1639286
1639197
-
Ser
TGA
-
¡û
>W2130011403
JAAVVE010000036
Alphaproteobacteria
Sphingomonas sp. dw_22 [JAAVVE]
1759
1848
+
Ser
TGA
[ENA]
¡û
>W1511581096
LARW01000050
Alphaproteobacteria
Sphingomonas sp. SRS2 [LARW]
28595
28506
-
Ser
TGA
[ENA]
¡û
>WENV056176
AACY023250301
Marine microbial communities from Global Ocean Sampling (GOS)
398
307
-
Ser
TGA
[ENA]
>W1610071325
BCTZ01000004
Alphaproteobacteria
Sphingomonas soli NBRC 100801 [BCTZ]
89641
89552
-
Ser
TGA
[ENA]
¡û
>W1610076684
BCYY01000002
Alphaproteobacteria
Sphingomonas pituitosa NBRC 102491 [BCYY]
77925
78014
+
Ser
TGA
[ENA]
¡û
>W1610729505
LMIB01000001
Alphaproteobacteria
Sphingomonas sp. Root710 [LMIB]
867012
867101
+
Ser
TGA
[ENA]
¡û
>W1610730463
LMIV01000001
Alphaproteobacteria
Sphingomonas sp. Root241 [LMIV]
1503154
1503065
-
Ser
TGA
[ENA]
¡û
>WENV077898
AAFX01120634
Soil microbial communities from Minnesota Farm
297
388
+
Ser
TGA
[ENA]
>W1710068690
BCTZ01000004
Alphaproteobacteria
Sphingomonas soli NBRC 100801 [BCTZ]
89641
89552
-
Ser
TGA
[ENA]
¡û
>W1710074373
BCYY01000002
Alphaproteobacteria
Sphingomonas pituitosa NBRC 102491 [BCYY]
77925
78014
+
Ser
TGA
[ENA]
¡û
>W1710743466
LGVA01000010
Alphaproteobacteria
Sphingomonas sp. Ndbn-20 [LGVA]
133850
133761
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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