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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.26345 (9 seq.)
>C025524
BA000039
Cyanobacteriota
Thermosynechococcus vestitus BP-1 [BA000039]
2402369
2402455
+
Ser
CGA
[Ensembl]
¡û
>WENV180012957
FMSI01034564
[FMSI] soil metagenome; Soil
1204
1116
-
Ser
CGA
[ENA]
¢þ
>WENV181414161
OGCL01000063
[OGCL] hot springs metagenome; Hot spring water
64438
64347
-
Ser
CGA
[ENA]
¢þ
>WENV170000916
AFSR01007791
[AFSR] hot springs metagenome; Yellowstone National Park Mushroom and Octopus hot springs
2306
2218
-
Ser
CGA
[ENA]
¢þ
>C181030490
CP018092
Cyanobacteriota
Thermostichus lividus PCC 6715 [CP018092]
927960
927872
-
Ser
CGA
-
¡û
>C191001211
AP018202
Cyanobacteriota
Thermostichus vulcanus NIES-2134 [AP018202]
2271377
2271466
+
Ser
CGA
-
¡û
>C141007936
CP006735
Cyanobacteriota
Thermosynechococcus sp. NK55a [CP006735]
1706368
1706456
+
Ser
CGA
-
¡û
>WENV11101259
AFSR01007791
[AFSR] hot springs metagenome; Yellowstone National Park Mushroom and Octopus hot springs
2306
2218
-
Ser
CGA
[ENA]
¡û
>C161002801
AP017367
Cyanobacteriota
Leptolyngbya sp. O-77 [AP017367]
1534098
1534010
-
Ser
CGA
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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