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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.263488 (142 seq.)
>W1710879740
LMRW01000001
Actinomycetota
Agromyces sp. Soil535 [LMRW]
678160
678233
+
Arg
ACG
[ENA]
¡û
>W1711007235
LQOZ01000032
Actinomycetota
Mycolicibacter hiberniae [LQOZ]
64720
64793
+
Arg
ACG
[ENA]
¡û
>W1711008445
LQPZ01000015
Actinomycetota
Mycolicibacillus trivialis triviale [LQPZ]
573
500
-
Arg
ACG
[ENA]
¡û
>W1711098451
LTJO01000044
Actinomycetota
Rothia sp. HMSC064D08 [LTJO]
101996
101921
-
Arg
ACG
[ENA]
¡û
>W1711107942
LTTG01000054
Actinomycetota
Rothia sp. HMSC065D02 [LTTG]
31376
31301
-
Arg
ACG
[ENA]
¡û
>W1711109171
LTUK01000036
Actinomycetota
Rothia sp. HMSC069C01 [LTUK]
27235
27310
+
Arg
ACG
[ENA]
¡û
>W1711173322
LWCT01000049
Actinomycetota
Plantibacter sp. H53 [LWCT]
97768
97695
-
Arg
ACG
[ENA]
¡û
>W1711280444
LZLJ01000062
Actinomycetota
Mycobacterium sp. 1274756.6 [LZLJ]
218916
218843
-
Arg
ACG
[ENA]
¡û
>W1711966755
NCXO01000071
Actinomycetota
Mycolicibacillus koreensis koreense [NCXO]
7739
7812
+
Arg
ACG
[ENA]
¡û
>W131182590
ARQM01000014
Actinomycetota
Promicromonospora sukumoe 327MFSha3.1 [ARQM]
297320
297393
+
Arg
ACG
[ENA]
¡û
>WENV180101095
OAOU01000453
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
663
588
-
Arg
ACG
[ENA]
¡û
>WENV180109996
OAPL01027972
[OAPL] marine metagenome; ENVO:00002010 for 'seawater
157
232
+
Arg
ACG
[ENA]
¡û
>WENV180208989
OBAK01002797
[OBAK] marine metagenome; ENVO.00002150
246
321
+
Arg
ACG
[ENA]
¡û
>WENV180212365
OBAN01014621
[OBAN] marine metagenome; ENVO 00002150
409
334
-
Arg
ACG
[ENA]
¡û
>WENV180358283
OBNP01021831
[OBNP] marine metagenome; seawater
115
190
+
Arg
ACG
[ENA]
¡û
>WENV180361810
OBNW01002429
[OBNW] marine metagenome; ENVO:00002010, 'SEA WATER
721
646
-
Arg
ACG
[ENA]
¡û
>WENV180380225
OBOQ01013195
[OBOQ] marine metagenome; Fridge
331
406
+
Arg
ACG
[ENA]
¡û
>WENV180391582
OBPN01009079
[OBPN] marine metagenome; seawater
553
628
+
Arg
ACG
[ENA]
¡û
>WENV180394443
OBPS01005679
[OBPS] marine metagenome; ENVO:00002010 seawater
1470
1395
-
Arg
ACG
[ENA]
¡û
>WENV180395202
OBPT01003770
[OBPT] marine metagenome; ENVO:00002010 seawater
742
667
-
Arg
ACG
[ENA]
¡û
>WENV180697717
ODDE01003286
[ODDE] human metagenome; G_DNA_Supragingival plaque
3376
3449
+
Arg
ACG
[ENA]
¡û
>WENV180734003
ODGZ01001864
[ODGZ] human metagenome; G_DNA_Supragingival plaque
4263
4336
+
Arg
ACG
[ENA]
¡û
>WENV180740981
ODHG01003150
[ODHG] human metagenome; G_DNA_Buccal mucosa
129
202
+
Arg
ACG
[ENA]
¡û
>WENV180754862
ODHU01001961
[ODHU] human metagenome; G_DNA_Supragingival plaque
647
720
+
Arg
ACG
[ENA]
¡û
>WENV180758885
ODHX01061433
[ODHX] human metagenome; G_DNA_Buccal mucosa
121
48
-
Arg
ACG
[ENA]
¡û
>WENV180800589
ODJD01000230
[ODJD] human metagenome; G_DNA_Supragingival plaque
5356
5283
-
Arg
ACG
[ENA]
¡û
>WENV180843518
ODKN01004219
[ODKN] human metagenome; G_DNA_Supragingival plaque
4593
4520
-
Arg
ACG
[ENA]
¡û
>WENV180878796
ODLY01000038
[ODLY] human metagenome; G_DNA_Anterior nares
4443
4370
-
Arg
ACG
[ENA]
¡û
>WENV180891103
ODMO01053208
[ODMO] human metagenome; G_DNA_Tongue dorsum
24
97
+
Arg
ACG
[ENA]
¡û
>WENV180891705
ODMQ01005985
[ODMQ] human metagenome; G_DNA_Supragingival plaque
1082
1009
-
Arg
ACG
[ENA]
¡û
>WENV180921481
ODTJ01000070
[ODTJ] human metagenome; G_DNA_Supragingival plaque
93220
93147
-
Arg
ACG
[ENA]
¡û
>WENV180953364
ODUI01024297
[ODUI] human metagenome; G_DNA_Tongue dorsum
689
616
-
Arg
ACG
[ENA]
¡û
>WENV180988776
ODVL01010340
[ODVL] human metagenome; G_DNA_Tongue dorsum
1695
1622
-
Arg
ACG
[ENA]
¡û
>WENV181006085
ODWA01001300
[ODWA] human metagenome; G_DNA_Buccal mucosa
5628
5555
-
Arg
ACG
[ENA]
¡û
>WENV181019438
ODWU01003121
[ODWU] human metagenome; G_DNA_Supragingival plaque
751
824
+
Arg
ACG
[ENA]
¡û
>WENV181042866
ODXU01012343
[ODXU] human metagenome; G_DNA_Buccal mucosa
412
485
+
Arg
ACG
[ENA]
¡û
>WENV181049616
ODYD01000919
[ODYD] human metagenome; G_DNA_Supragingival plaque
8518
8445
-
Arg
ACG
[ENA]
¡û
>WENV181124366
OEFR01000551
[OEFR] human metagenome; G_DNA_Anterior nares
668
595
-
Arg
ACG
[ENA]
¡û
>WENV181126182
OEFV01015385
[OEFV] marine metagenome; Particulate matter on a 0.22 Um pore size filter
79
154
+
Arg
ACG
[ENA]
¡û
>WENV181232750
OFEP01044557
[OFEP] coral metagenome; NA
1355
1282
-
Arg
ACG
[ENA]
¡û
>WENV181392795
OFRX01005982
[OFRX] seawater metagenome; seawater
672
597
-
Arg
ACG
[ENA]
¡û
>WENV018950
AACY020523056
Marine microbial communities from Global Ocean Sampling (GOS)
2815
2738
-
Arg
ACG
[ENA]
>WENV182540438
OJAJ01001200
[OJAJ] seawater metagenome; Sea water
82
7
-
Arg
ACG
[ENA]
¡û
>WENV182540946
OJAQ01000675
[OJAQ] seawater metagenome; Sea water
4087
4162
+
Arg
ACG
[ENA]
¡û
>WENV182542241
OJAV01020047
[OJAV] seawater metagenome; Sea water
358
283
-
Arg
ACG
[ENA]
¡û
>WENV182542972
OJAZ01011737
[OJAZ] seawater metagenome; Sea water
1111
1186
+
Arg
ACG
[ENA]
¡û
>WENV182549999
OJBZ01001418
[OJBZ] seawater metagenome; Sea water
2625
2700
+
Arg
ACG
[ENA]
¡û
>WENV182553518
OJCR01008856
[OJCR] seawater metagenome; Sea water
2293
2368
+
Arg
ACG
[ENA]
¡û
>WENV182557062
OJDI01000615
[OJDI] seawater metagenome; Sea water
13290
13365
+
Arg
ACG
[ENA]
¡û
>WENV182561571
OJDX01000003
[OJDX] seawater metagenome; Sea water
656
581
-
Arg
ACG
[ENA]
¡û
>WENV182561906
OJDY01000003
[OJDY] seawater metagenome; Sea water
824
749
-
Arg
ACG
[ENA]
¡û
>WENV182562711
OJEA01000341
[OJEA] seawater metagenome; Sea water
4430
4505
+
Arg
ACG
[ENA]
¡û
>WENV182563040
OJEB01000007
[OJEB] seawater metagenome; Sea water
58008
58083
+
Arg
ACG
[ENA]
¡û
>WENV182564237
OJEE01000787
[OJEE] seawater metagenome; Sea water
2197
2272
+
Arg
ACG
[ENA]
¡û
>WENV182568998
OJEY01000006
[OJEY] seawater metagenome; Sea water
154
79
-
Arg
ACG
[ENA]
¡û
>WENV182569782
OJFB01000505
[OJFB] seawater metagenome; Sea water
9931
10006
+
Arg
ACG
[ENA]
¡û
>WENV182571151
OJFG01000714
[OJFG] seawater metagenome; Sea water
6683
6758
+
Arg
ACG
[ENA]
¡û
>WENV182573653
OJFP01009281
[OJFP] seawater metagenome; Sea water
744
819
+
Arg
ACG
[ENA]
¡û
>WENV182574566
OJFS01000026
[OJFS] seawater metagenome; Sea water
95461
95536
+
Arg
ACG
[ENA]
¡û
>WENV182577960
OJGM01000106
[OJGM] seawater metagenome; Sea water
781
706
-
Arg
ACG
[ENA]
¡û
>WENV182580824
OJGW01015708
[OJGW] seawater metagenome; Sea water
1318
1393
+
Arg
ACG
[ENA]
¡û
>WENV182582079
OJHA01000003
[OJHA] seawater metagenome; Sea water
4407
4332
-
Arg
ACG
[ENA]
¡û
>WENV182582394
OJHB01000027
[OJHB] seawater metagenome; Sea water
30148
30223
+
Arg
ACG
[ENA]
¡û
>WENV182583282
OJHD01002136
[OJHD] seawater metagenome; Sea water
103
178
+
Arg
ACG
[ENA]
¡û
>WENV182586863
OJHK01008098
[OJHK] seawater metagenome; Sea water
1241
1316
+
Arg
ACG
[ENA]
¡û
>WENV182587524
OJHN01000001
[OJHN] seawater metagenome; Sea water
154
79
-
Arg
ACG
[ENA]
¡û
>WENV182592415
OJIR01000446
[OJIR] seawater metagenome; Sea water
178
103
-
Arg
ACG
[ENA]
¡û
>WENV019500
AACY020533308
Marine microbial communities from Global Ocean Sampling (GOS)
2424
2347
-
Arg
ACG
[ENA]
>WENV019659
AACY020536334
Marine microbial communities from Global Ocean Sampling (GOS)
1961
1884
-
Arg
ACG
[ENA]
>WENV183054511
OLGU01000006
[OLGU] seawater metagenome; Sea water
95438
95513
+
Arg
ACG
[ENA]
¡û
>WENV183059256
OLHU01000123
[OLHU] seawater metagenome; Sea water
13366
13441
+
Arg
ACG
[ENA]
¡û
>WENV183060276
OLHX01001162
[OLHX] seawater metagenome; Sea water
1393
1318
-
Arg
ACG
[ENA]
¡û
>WENV183629156
OOGP01005893
[OOGP] marine metagenome; seawater
769
844
+
Arg
ACG
[ENA]
¡û
>ENV08001824
ABOG01016867
saltern metagenome; microbial fraction from medium salinity saltern in San Diego, CA
86
11
-
Arg
ACG
[ENA]
¡û
>WENV170119556
CENJ01150792
[CENJ] marine metagenome genome assembly TARA_009_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
193
118
-
Arg
ACG
[ENA]
¡û
>WENV170133781
CENU01050048
[CENU] marine metagenome genome assembly TARA_025_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
614
688
+
Arg
ACG
[ENA]
¡û
>WENV020769
AACY020558181
Marine microbial communities from Global Ocean Sampling (GOS)
4996
5073
+
Arg
ACG
[ENA]
>WENV170311470
CESM01146098
[CESM] marine metagenome genome assembly TARA_102_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
207
282
+
Arg
ACG
[ENA]
¡û
>WENV170569131
FLMP01130137
[FLMP] seawater metagenome; seawater
55
130
+
Arg
ACG
[ENA]
¡û
>WENV170570748
FLOH01000020
[FLOH] marine metagenome; water
518573
518498
-
Arg
ACG
[ENA]
¡û
>WENV170599019
FUWD010058320
[FUWD] metagenome; unknown
332
407
+
Arg
ACG
[ENA]
¡û
>WENV170616221
FUWD012881849
[FUWD] metagenome; unknown
752
827
+
Arg
ACG
[ENA]
¡û
>WENV170616222
FUWD012881850
[FUWD] metagenome; unknown
666
741
+
Arg
ACG
[ENA]
¡û
>WENV170624647
FUWD013184447
[FUWD] metagenome; unknown
461
386
-
Arg
ACG
[ENA]
¡û
>WENV170624939
FUWD013189041
[FUWD] metagenome; unknown
2011
1936
-
Arg
ACG
[ENA]
¡û
>WENV170625259
FUWD013194434
[FUWD] metagenome; unknown
2673
2748
+
Arg
ACG
[ENA]
¡û
>WENV170627192
FUWD013231977
[FUWD] metagenome; unknown
13588
13663
+
Arg
ACG
[ENA]
¡û
>WENV170627195
FUWD013231978
[FUWD] metagenome; unknown
12436
12511
+
Arg
ACG
[ENA]
¡û
>WENV170627196
FUWD013231979
[FUWD] metagenome; unknown
35
110
+
Arg
ACG
[ENA]
¡û
>WENV170628126
FUWD013242293
[FUWD] metagenome; unknown
54338
54413
+
Arg
ACG
[ENA]
¡û
>WENV170632557
FUWD013384438
[FUWD] metagenome; unknown
13588
13663
+
Arg
ACG
[ENA]
¡û
>WENV170632560
FUWD013384439
[FUWD] metagenome; unknown
12436
12511
+
Arg
ACG
[ENA]
¡û
>WENV170632561
FUWD013384440
[FUWD] metagenome; unknown
35
110
+
Arg
ACG
[ENA]
¡û
>WENV170632927
FUWD013388835
[FUWD] metagenome; unknown
461
386
-
Arg
ACG
[ENA]
¡û
>WENV170633196
FUWD013392699
[FUWD] metagenome; unknown
2011
1936
-
Arg
ACG
[ENA]
¡û
>WENV170950255
MEHZ011487420
[MEHZ] marine metagenome; marine surface water
196
271
+
Arg
ACG
[ENA]
¡û
>WENV170953747
MEHZ011662070
[MEHZ] marine metagenome; marine surface water
7651
7726
+
Arg
ACG
[ENA]
¡û
>C181143716
CP026923
Actinomycetota
Pontimonas salivibrio CL-TW6 [CP026923]
231155
231230
+
Arg
ACG
-
¡û
>C181143918
CP026949
Actinomycetota
Mycetocola zhujimingii 449 [CP026949]
234905
234978
+
Arg
ACG
-
¡û
>C191071520
CP030033
Actinomycetota
Cryobacterium soli GCJ02 [CP030033]
2252655
2252582
-
Arg
ACG
-
¡û
>WENV027753
AACY021069507
Marine microbial communities from Global Ocean Sampling (GOS)
430
353
-
Arg
ACG
[ENA]
>SRA1023447
SRR035084.101437
454 Sequencing (SRP001805)
11
86
+
Arg
ACG
[SRA]
>SRA1024309
SRR035084.295244
454 Sequencing (SRP001805)
50
125
+
Arg
ACG
[SRA]
>SRA1024986
SRR035084.453448
454 Sequencing (SRP001805)
122
47
-
Arg
ACG
[SRA]
>SRA1025084
SRR035084.480126
454 Sequencing (SRP001805)
385
310
-
Arg
ACG
[SRA]
>SRA1028939
SRR035087.41141
454 Sequencing (SRP001808)
345
420
+
Arg
ACG
[SRA]
>SRA1034383
SRR035089.74580
454 Sequencing (SRP001810)
122
197
+
Arg
ACG
[SRA]
>W2010405925
FWFI01000002
Actinomycetota
Corynebacterium xerosis B Mi 98.15 [FWFI]
60592
60666
+
Arg
ACG
[ENA]
¡û
>W2010691815
JACGWV010000002
Actinomycetota
Promicromonospora sukumoe DSM 44121 [JACGWV]
1289659
1289586
-
Arg
ACG
[ENA]
¡û
>SRA1038181
SRR035090.259754
454 Sequencing (SRP001811)
150
75
-
Arg
ACG
[SRA]
>SRA1039765
SRR035090.563276
454 Sequencing (SRP001811)
149
74
-
Arg
ACG
[SRA]
>SRA1045610
SRR035093.133392
454 Sequencing (SRP001814)
393
318
-
Arg
ACG
[SRA]
>SRA1051780
SRR035098.75037
454 Sequencing (SRP001819)
239
314
+
Arg
ACG
[SRA]
>SRA1051831
SRR035098.84713
454 Sequencing (SRP001819)
266
341
+
Arg
ACG
[SRA]
>SRA1051892
SRR035098.96299
454 Sequencing (SRP001819)
76
1
-
Arg
ACG
[SRA]
>SRA1052115
SRR035098.144218
454 Sequencing (SRP001819)
266
341
+
Arg
ACG
[SRA]
>SRA1052613
SRR035098.237586
454 Sequencing (SRP001819)
80
155
+
Arg
ACG
[SRA]
>SRA1053617
SRR035098.453501
454 Sequencing (SRP001819)
63
138
+
Arg
ACG
[SRA]
>SRA1053619
SRR035098.453907
454 Sequencing (SRP001819)
109
184
+
Arg
ACG
[SRA]
>SRA1053665
SRR035098.461959
454 Sequencing (SRP001819)
239
314
+
Arg
ACG
[SRA]
>W2110074579
CABFMC010000009
Actinomycetota
Rothia dentocariosa [CABFMC]
24902
24975
+
Arg
ACG
[ENA]
¡û
>W2110287609
JACYHB010000004
Actinomycetota
Cellulosimicrobium arenosum KCTC 49039 [JACYHB]
32800
32873
+
Arg
ACG
[ENA]
¡û
>W2110288805
JACYNV010000002
Actinomycetota
Plantibacter sp. CFBP 8775 CFBP8775 [JACYNV]
1359770
1359697
-
Arg
ACG
[ENA]
¡û
>W2110329786
JADKSI010000003
Actinomycetota
Plantibacter sp. VKM Ac-2876 [JADKSI]
242469
242542
+
Arg
ACG
[ENA]
¡û
>W2110329880
JADKSK010000002
Actinomycetota
Plantibacter sp. VKM Ac-2885 [JADKSK]
265952
266025
+
Arg
ACG
[ENA]
¡û
>W2110592265
JAHCLR010000035
Actinomycetota
Mycobacterium sp. M1 [JAHCLR]
14826
14901
+
Arg
ACG
[ENA]
¡û
>W10111933
ADDW01000023
Actinomycetota
Rothia dentocariosa M567 [ADDW]
182419
182344
-
Arg
ACG
[ENA]
¡û
>C231602109
CP117849
Actinomycetota
Cryobacterium sp. SO2 [CP117849]
236247
236320
+
Arg
ACG
-
¡û
>C231638276
CP121208
Actinomycetota
Arcanobacterium canis DSM 25104 [CP121208]
1793327
1793400
+
Arg
ACG
-
¡û
>C231638914
CP121247
Actinomycetota
Arcanobacterium wilhelmae DSM 102162 [CP121247]
1890924
1890997
+
Arg
ACG
-
¡û
>C241006092
AP022594
Actinomycetota
Mycolicibacillus koreensis JCM 19956 [AP022594]
3385759
3385832
+
Arg
ACG
-
¡û
>C241308879
CP133407
Actinomycetota
Trueperella abortisuis KKAHC01 [CP133407]
2075914
2075841
-
Arg
ACG
-
¡û
>WENV039536
AACY022016742
Marine microbial communities from Global Ocean Sampling (GOS)
116
39
-
Arg
ACG
[ENA]
>C11115461
CP002329
Actinomycetota
Mycolicibacter sinensis JDM601 [CP002329]
4297094
4297021
-
Arg
ACG
[Ensembl]
¡û
>W11114910
ADDW01000023
Actinomycetota
Rothia dentocariosa M567 [ADDW]
182419
182344
-
Arg
ACG
[ENA]
¡û
>WENV056580
AACY023260078
Marine microbial communities from Global Ocean Sampling (GOS)
696
619
-
Arg
ACG
[ENA]
>C161095670
CP016282
Actinomycetota
Cryobacterium arcticum PAMC 27867 [CP016282]
237665
237738
+
Arg
ACG
[Ensembl]
¡û
>WENV070825
AACY023824576
Marine microbial communities from Global Ocean Sampling (GOS)
242
319
+
Arg
ACG
[ENA]
>WENV074363
AACY023971576
Marine microbial communities from Global Ocean Sampling (GOS)
913
990
+
Arg
ACG
[ENA]
>WENV074586
AACY023984133
Marine microbial communities from Global Ocean Sampling (GOS)
102
179
+
Arg
ACG
[ENA]
>W1611039729
LZLJ01000062
Actinomycetota
Mycobacterium sp. 1274756.6 [LZLJ]
218916
218843
-
Arg
ACG
[ENA]
¡û
>W1710510868
FMYH01000001
Actinomycetota
Sanguibacter gelidistatuariae ISLP-3 [FMYH]
289461
289388
-
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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