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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.26376 (40 seq.)
>WENV181306685
OFIM01000472
[OFIM] marine metagenome; seawater
1979
2068
+
Ser
GCT
[ENA]
¡û
>WENV181313894
OFJH01021816
[OFJH] marine metagenome; seawater
340
429
+
Ser
GCT
[ENA]
¡û
>WENV181385579
OFRJ01000221
[OFRJ] marine metagenome; seawater
3086
2997
-
Ser
GCT
[ENA]
¡û
>WENV182543338
OJBA01026630
[OJBA] seawater metagenome; Sea water
455
366
-
Ser
GCT
[ENA]
¡û
>WENV182563604
OJEC01006490
[OJEC] seawater metagenome; Sea water
88
1
-
Ser
GCT
[ENA]
¡û
>WENV182583998
OJHF01002941
[OJHF] seawater metagenome; Sea water
3069
3158
+
Ser
GCT
[ENA]
¡û
>WENV183626540
OOGI01029887
[OOGI] marine metagenome; seawater
277
188
-
Ser
GCT
[ENA]
¡û
>WENV170304484
CESI01048183
[CESI] marine metagenome genome assembly TARA_082_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
179
90
-
Ser
GCT
[ENA]
¡û
>WENV170327139
CESU01047633
[CESU] marine metagenome genome assembly TARA_082_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
204
115
-
Ser
GCT
[ENA]
¡û
>WENV170567512
FLMP01001339
[FLMP] seawater metagenome; seawater
6637
6726
+
Ser
GCT
[ENA]
¡û
>WENV170673379
LAZR01012847
[LAZR] marine sediment metagenome; Loki non-amplified sample from Loki's castle hydrothermal vent sediment
2305
2216
-
Ser
GCT
[ENA]
¡û
>WENV170823107
MDSY01051641
[MDSY] marine metagenome; seawater
90804
90893
+
Ser
GCT
[ENA]
¡û
>WENV170952089
MEHZ011582585
[MEHZ] marine metagenome; marine surface water
2168
2257
+
Ser
GCT
[ENA]
¡û
>W141818714
JQLS01000008
Alphaproteobacteria
Roseovarius sp. MCTG156(2b) [JQLS]
947340
947429
+
Ser
GCT
[ENA]
¡û
>W1911652497
QBBT01000017
Alphaproteobacteria
Rhodobacteraceae bacterium Lw-13e [QBBT]
22257
22168
-
Ser
GCT
[ENA]
¡û
>W1911749926
QWJJ01000013
Alphaproteobacteria
Pseudooceanicola sp. CY03 [QWJJ]
58745
58656
-
Ser
GCT
[ENA]
¡û
>W1911810965
QZCG01000005
Alphaproteobacteria
Paracoccus sp. 1011MAR3C25 [QZCG]
281733
281822
+
Ser
GCT
[ENA]
¡û
>W1810232531
PPCN01000003
Alphaproteobacteria
Roseibium marinum DSM 17023 [PPCN]
397561
397650
+
Ser
GCT
[ENA]
¡û
>W1810365504
PVUF01000001
Alphaproteobacteria
Tritonibacter scottomollicae DSM 25328 [PVUF]
455564
455653
+
Ser
GCT
[ENA]
¡û
>W1810471781
QAGK01000004
Alphaproteobacteria
Oceaniglobus ichthyenteri YLY08 [QAGK]
8484
8573
+
Ser
GCT
[ENA]
¡û
>W1810532472
QCYH01000004
Alphaproteobacteria
Pelagivirga sediminicola BH-SD19 [QCYH]
120270
120181
-
Ser
GCT
[ENA]
¡û
>W1810594572
QGDB01000003
Alphaproteobacteria
Falsochrobactrum shanghaiense HN4 [QGDB]
642473
642562
+
Ser
GCT
[ENA]
¡û
>W1810603205
QGKU01000001
Alphaproteobacteria
Meridianimarinicoccus roseus TG-679 [QGKU]
2976
2887
-
Ser
GCT
[ENA]
¡û
>W1810914907
QVQC01000057
Alphaproteobacteria
Rhodobacteraceae bacterium W635 [QVQC]
37388
37477
+
Ser
GCT
[ENA]
¡û
>W2010071548
APKE01000007
Alphaproteobacteria
Profundibacterium mesophilum KAUST100406-0324 [APKE]
104657
104746
+
Ser
GCT
[ENA]
¡û
>W2010572714
JAAVLP010000001
Alphaproteobacteria
Ochrobactrum daejeonense JCM 16234 [JAAVLP]
1169923
1169834
-
Ser
GCT
[ENA]
¡û
>W2011235969
QBBT01000017
Alphaproteobacteria
Rhodobacteraceae bacterium Lw-13e [QBBT]
22257
22168
-
Ser
GCT
[ENA]
¡û
>W2011319171
QWJJ01000013
Alphaproteobacteria
Pseudooceanicola sp. CY03 [QWJJ]
58745
58656
-
Ser
GCT
[ENA]
¡û
>W2011633421
SMFP01000035
Alphaproteobacteria
Sulfitobacter sp. S4J41 [SMFP]
8733
8822
+
Ser
GCT
[ENA]
¡û
>W2011642269
SMZO01000018
Alphaproteobacteria
Rhodobacteraceae bacterium SM1902 [SMZO]
60212
60123
-
Ser
GCT
[ENA]
¡û
>W2011756446
SZZN01000001
Alphaproteobacteria
Roseovarius sp. MK6-18 [SZZN]
2981274
2981185
-
Ser
GCT
[ENA]
¡û
>W2110447948
JAESJF010000779
Alphaproteobacteria
Rhodovulum sulfidophilum AB20 [JAESJF]
811
722
-
Ser
GCT
[ENA]
¡û
>W2110641278
JAHRVA010000001
Alphaproteobacteria
Falsochrobactrum sp. TDYN1 [JAHRVA]
867361
867272
-
Ser
GCT
[ENA]
¡û
>C201220451
CP049028
Alphaproteobacteria
Rhodobacteraceae bacterium SC52 [CP049028]
1306858
1306947
+
Ser
GCT
-
¡û
>C211133928
CP060436
Alphaproteobacteria
Pseudooceanicola algae Lw-13e [CP060436]
3433633
3433722
+
Ser
GCT
-
¡û
>C211147973
CP061498
Alphaproteobacteria
Roseicitreum antarcticum ZS2-28 [CP061498]
336831
336920
+
Ser
GCT
-
¡û
>C241329328
CP136704
Alphaproteobacteria
Tritonibacter scottomollicae LC.270.F.C4 [CP136704]
2325576
2325487
-
Ser
GCT
-
¡û
>C241359580
CP141179
Alphaproteobacteria
Roseovarius sp. Pro17 [CP141179]
2490856
2490945
+
Ser
GCT
-
¡û
>W1710530067
FNOM01000002
Alphaproteobacteria
Roseicitreum antarcticum [FNOM]
308572
308661
+
Ser
GCT
[ENA]
¡û
>W1710549567
FOEP01000007
Alphaproteobacteria
Thalassovita taeanensis taeanense [FOEP]
77219
77130
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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