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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.26431 (58 seq.)
>W1710861063
LMDJ01000012
Betaproteobacteria
Massilia sp. Root351 [LMDJ]
526810
526721
-
Ser
TGA
[ENA]
¡û
>W1710871774
LMLM01000004
Betaproteobacteria
Duganella sp. Leaf61 [LMLM]
64515
64604
+
Ser
TGA
[ENA]
¡û
>W1710874775
LMNW01000031
Betaproteobacteria
Duganella sp. Leaf126 [LMNW]
2408
2319
-
Ser
TGA
[ENA]
¡û
>W1711046611
LROM01000062
Betaproteobacteria
Duganella phyllosphaerae [LROM]
15999
16088
+
Ser
TGA
[ENA]
¡û
>C181163929
CP028324
Betaproteobacteria
Pseudoduganella armeniaca ZMN-3 [CP028324]
2468182
2468271
+
Ser
TGA
-
¡û
>C181187774
CP030092
Betaproteobacteria
Massilia sp. YMA4 [CP030092]
2642635
2642546
-
Ser
TGA
-
¡û
>C191157317
CP038026
Betaproteobacteria
Pseudoduganella plicata DSM 17505 [CP038026]
5549064
5549153
+
Ser
TGA
-
¡û
>C191173985
CP040017
Betaproteobacteria
Pseudoduganella umbonata DSMZ 26121 [CP040017]
6934878
6934967
+
Ser
TGA
-
¡û
>W1810068760
PDZP01000019
Betaproteobacteria
Janthinobacterium sp. BJB412 [PDZP]
111310
111399
+
Ser
TGA
[ENA]
¡û
>W1810330128
PUIP01000007
Betaproteobacteria
Massilia phosphatilytica 12-OD1 [PUIP]
280667
280578
-
Ser
TGA
[ENA]
¡û
>W1810486605
QAXZ01000005
Betaproteobacteria
Massilia sp. GV045 [QAXZ]
156897
156986
+
Ser
TGA
[ENA]
¡û
>W1810487106
QAYI01000003
Betaproteobacteria
Massilia sp. GV016 [QAYI]
497448
497359
-
Ser
TGA
[ENA]
¡û
>W1810672593
QJTN01000003
Betaproteobacteria
Massilia sp. GV024 [QJTN]
497448
497359
-
Ser
TGA
[ENA]
¡û
>W1810788021
QREC01000009
Betaproteobacteria
Duganella sp. GV023 [QREC]
17906
17817
-
Ser
TGA
[ENA]
¡û
>W1810885115
QUNB01000009
Betaproteobacteria
Duganella sp. GV032 [QUNB]
17906
17817
-
Ser
TGA
[ENA]
¡û
>SRA1015689
SRR023846.158871
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
147
58
-
Ser
TGA
[SRA]
>SRA1016108
SRR023846.350915
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
147
58
-
Ser
TGA
[SRA]
>W2010450997
JAADJT010000023
Betaproteobacteria
Duganella sp. SAP-35 [JAADJT]
364
275
-
Ser
TGA
[ENA]
¡û
>W2010630606
JABTBR010000021
Betaproteobacteria
Oxalobacteraceae bacterium BJB404 [JABTBR]
237
148
-
Ser
TGA
[ENA]
¡û
>W2010641346
JABWEB010000032
Betaproteobacteria
Massilia sp. BJB1822 [JABWEB]
47047
47136
+
Ser
TGA
[ENA]
¡û
>W2010667393
JACBYS010000001
Betaproteobacteria
Duganella sp. 1224 [JACBYS]
2561901
2561812
-
Ser
TGA
[ENA]
¡û
>W2010695092
JACHBX010000001
Betaproteobacteria
Massilia aurea AT3.2 [JACHBX]
635549
635638
+
Ser
TGA
[ENA]
¡û
>W2010717017
JACHXS010000011
Betaproteobacteria
Massilia umbonata CECT 7753 [JACHXS]
150898
150809
-
Ser
TGA
[ENA]
¡û
>W2011629877
SMBW01000005
Betaproteobacteria
Massilia sp. GV097 [SMBW]
156897
156986
+
Ser
TGA
[ENA]
¡û
>W2011694676
STGG01000030
Betaproteobacteria
Massilia sp. HP4 [STGG]
60368
60457
+
Ser
TGA
[ENA]
¡û
>W2012123566
VPFC01000043
Betaproteobacteria
Empedobacter haloabium ATCC 31962 [VPFC]
7028
6939
-
Ser
TGA
[ENA]
¡û
>W2012330661
WHUG01000022
Betaproteobacteria
Rugamonas sp. FT29W [WHUG]
59658
59569
-
Ser
TGA
[ENA]
¡û
>W2012357408
WKJK01000029
Betaproteobacteria
Duganella sp. FT80W [WKJK]
20944
20855
-
Ser
TGA
[ENA]
¡û
>W2012399300
WNKZ01000090
Betaproteobacteria
Massilia buxea KCTC 52429 [WNKZ]
5674
5585
-
Ser
TGA
[ENA]
¡û
>W2012400529
WNWM01000002
Betaproteobacteria
Massilia dura DSM 17513 [WNWM]
1156779
1156690
-
Ser
TGA
[ENA]
¡û
>W2012469917
WWCR01000029
Betaproteobacteria
Duganella sp. FT134W [WWCR]
22438
22527
+
Ser
TGA
[ENA]
¡û
>W2012469981
WWCS01000016
Betaproteobacteria
Duganella pernnla FT109W [WWCS]
55038
54949
-
Ser
TGA
[ENA]
¡û
>W2012470033
WWCT01000009
Betaproteobacteria
Duganella levis CY42W [WWCT]
22211
22300
+
Ser
TGA
[ENA]
¡û
>W2110028783
BMKG01000031
Betaproteobacteria
Massilia buxea CGMCC 1.15931 [BMKG]
59286
59375
+
Ser
TGA
[ENA]
¡û
>W2110046857
BMWU01000085
Betaproteobacteria
Massilia dura KCTC 12342 [BMWU]
298
209
-
Ser
TGA
[ENA]
¡û
>W2110046953
BMWW01000003
Betaproteobacteria
Massilia plicata KCTC 12344 [BMWW]
23061
23150
+
Ser
TGA
[ENA]
¡û
>W2110290457
JACYUC010000003
Betaproteobacteria
Oxalobacteraceae sp. CFBP 8763 CFBP8763 [JACYUC]
456523
456434
-
Ser
TGA
[ENA]
¡û
>W2110290570
JACYUE010000002
Betaproteobacteria
Oxalobacteraceae sp. CFBP 8761 CFBP8761 [JACYUE]
1021342
1021431
+
Ser
TGA
[ENA]
¡û
>W2110290768
JACYUN010000002
Betaproteobacteria
Oxalobacteraceae sp. CFBP 8755 CFBP8755 [JACYUN]
802140
802051
-
Ser
TGA
[ENA]
¡û
>W2110290894
JACYUQ010000001
Betaproteobacteria
Oxalobacteraceae sp. CFBP 13730 CFBP13730 [JACYUQ]
353659
353570
-
Ser
TGA
[ENA]
¡û
>W2110291245
JACYUX010000001
Betaproteobacteria
Oxalobacteraceae sp. CFBP 8753 CFBP8753 [JACYUX]
3065868
3065779
-
Ser
TGA
[ENA]
¡û
>W2110291679
JACYVK010000001
Betaproteobacteria
Oxalobacteraceae sp. CFBP 13708 CFBP13708 [JACYVK]
1072797
1072886
+
Ser
TGA
[ENA]
¡û
>W2110500190
JAFICD010000002
Betaproteobacteria
Duganella sp. 1411 [JAFICD]
1082598
1082509
-
Ser
TGA
[ENA]
¡û
>W2110649325
JAHUWK010000014
Betaproteobacteria
Duganella sp. sic0402 [JAHUWK]
11223
11134
-
Ser
TGA
[ENA]
¡û
>C231227224
CP086370
Betaproteobacteria
Massilia sp. HC52 [CP086370]
5149171
5149082
-
Ser
TGA
-
¡û
>C231416663
CP099650
Betaproteobacteria
Oxalobacteraceae bacterium OTU3CAMAD1 [CP099650]
5731021
5730932
-
Ser
TGA
-
¡û
>C231416743
CP099651
Betaproteobacteria
Oxalobacteraceae bacterium OTU3REALA1 [CP099651]
5920334
5920245
-
Ser
TGA
-
¡û
>C231416822
CP099652
Betaproteobacteria
Oxalobacteraceae bacterium OTU3CINTB1 [CP099652]
5082371
5082282
-
Ser
TGA
-
¡û
>C231617224
CP119083
Betaproteobacteria
Telluria chitinolytica ACM 3522 [CP119083]
2748065
2747976
-
Ser
TGA
-
¡û
>C231648754
CP122407
Betaproteobacteria
Rugamonas sp. DEMB1 [CP122407]
4398945
4398856
-
Ser
TGA
-
¡û
>C241151535
CP051684
Betaproteobacteria
Duganella dendranthematis AF9R3 [CP051684]
4484640
4484729
+
Ser
TGA
-
¡û
>W1610723409
LMDJ01000012
Betaproteobacteria
Massilia sp. Root351 [LMDJ]
526810
526721
-
Ser
TGA
[ENA]
¡û
>W1610737121
LMNW01000031
Betaproteobacteria
Duganella sp. Leaf126 [LMNW]
2408
2319
-
Ser
TGA
[ENA]
¡û
>W1710512809
FMZS01000002
Betaproteobacteria
Massilia sp. PDC64 [FMZS]
678649
678738
+
Ser
TGA
[ENA]
¡û
>W1710515885
FNCD01000013
Betaproteobacteria
Duganella sp. OV458 [FNCD]
31244
31155
-
Ser
TGA
[ENA]
¡û
>W1710519323
FNEQ01000013
Betaproteobacteria
Duganella sp. OV510 [FNEQ]
130613
130702
+
Ser
TGA
[ENA]
¡û
>W1710547619
FODC01000010
Betaproteobacteria
Duganella sp. CF517 [FODC]
9967
9878
-
Ser
TGA
[ENA]
¡û
>W1710568806
FOTW01000013
Betaproteobacteria
Rugamonas rubra [FOTW]
47107
47196
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK