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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.266125 (113 seq.)
>W1711334183
MBQD01000006
Actinomycetota
Tessaracoccus lapidicaptus [MBQD]
173
246
+
Thr
CGT
[ENA]
¡û
>W1711718022
MTHC01000014
Actinomycetota
Tessaracoccus sp. ZS01 [MTHC]
69206
69281
+
Thr
CGT
[ENA]
¡û
>C171091489
CP019229
Actinomycetota
Tessaracoccus sp. T2.5-30 [CP019229]
2343972
2344045
+
Thr
CGT
-
¡û
>C171096187
CP019605
Actinomycetota
Tessaracoccus flavus RP1 [CP019605]
354175
354250
+
Thr
CGT
-
¡û
>C171096253
CP019606
Actinomycetota
Tessaracoccus aquimaris NSG39 [CP019606]
3902852
3902925
+
Thr
CGT
-
¡û
>WENV180697898
ODDE01009628
[ODDE] human metagenome; G_DNA_Supragingival plaque
230
303
+
Thr
CGT
[ENA]
¡û
>WENV180729045
ODGU01169710
[ODGU] human metagenome; G_DNA_Supragingival plaque
300
373
+
Thr
CGT
[ENA]
¡û
>WENV180729318
ODGU01331537
[ODGU] human metagenome; G_DNA_Supragingival plaque
41
114
+
Thr
CGT
[ENA]
¡û
>WENV180734068
ODGZ01002341
[ODGZ] human metagenome; G_DNA_Supragingival plaque
8359
8286
-
Thr
CGT
[ENA]
¡û
>WENV180734675
ODGZ01017483
[ODGZ] human metagenome; G_DNA_Supragingival plaque
771
844
+
Thr
CGT
[ENA]
¡û
>WENV180735701
ODHB01000325
[ODHB] human metagenome; G_DNA_Supragingival plaque
14807
14732
-
Thr
CGT
[ENA]
¡û
>WENV180749908
ODHS01000101
[ODHS] human metagenome; G_DNA_Supragingival plaque
22232
22157
-
Thr
CGT
[ENA]
¡û
>WENV180755080
ODHU01012778
[ODHU] human metagenome; G_DNA_Supragingival plaque
576
501
-
Thr
CGT
[ENA]
¡û
>WENV180777239
ODIL01000635
[ODIL] human metagenome; G_DNA_Supragingival plaque
5222
5147
-
Thr
CGT
[ENA]
¡û
>WENV180782043
ODIP01015173
[ODIP] human metagenome; G_DNA_Supragingival plaque
277
350
+
Thr
CGT
[ENA]
¡û
>WENV180788614
ODIS01083884
[ODIS] human metagenome; G_DNA_Supragingival plaque
193
266
+
Thr
CGT
[ENA]
¡û
>WENV180797136
ODJB01031243
[ODJB] human metagenome; G_DNA_Supragingival plaque
1596
1523
-
Thr
CGT
[ENA]
¡û
>WENV180801205
ODJD01013502
[ODJD] human metagenome; G_DNA_Supragingival plaque
855
782
-
Thr
CGT
[ENA]
¡û
>WENV180804497
ODJG01003989
[ODJG] human metagenome; G_DNA_Supragingival plaque
3741
3666
-
Thr
CGT
[ENA]
¡û
>WENV180805065
ODJG01049430
[ODJG] human metagenome; G_DNA_Supragingival plaque
74
1
-
Thr
CGT
[ENA]
¡û
>WENV180813765
ODJO01002283
[ODJO] human metagenome; G_DNA_Supragingival plaque
8619
8544
-
Thr
CGT
[ENA]
¡û
>WENV180823248
ODJW01011508
[ODJW] human metagenome; G_DNA_Supragingival plaque
1182
1107
-
Thr
CGT
[ENA]
¡û
>WENV180824840
ODJX01064663
[ODJX] human metagenome; G_DNA_Supragingival plaque
211
138
-
Thr
CGT
[ENA]
¡û
>WENV180832918
ODKC01007945
[ODKC] human metagenome; G_DNA_Supragingival plaque
2152
2079
-
Thr
CGT
[ENA]
¡û
>WENV180834139
ODKD01004056
[ODKD] human metagenome; G_DNA_Supragingival plaque
2110
2185
+
Thr
CGT
[ENA]
¡û
>WENV180835739
ODKE01010120
[ODKE] human metagenome; G_DNA_Supragingival plaque
1550
1477
-
Thr
CGT
[ENA]
¡û
>WENV180844330
ODKN01078950
[ODKN] human metagenome; G_DNA_Supragingival plaque
75
2
-
Thr
CGT
[ENA]
¡û
>WENV180846685
ODKT01018909
[ODKT] human metagenome; G_DNA_Supragingival plaque
1371
1444
+
Thr
CGT
[ENA]
¡û
>WENV180859279
ODLD01000206
[ODLD] human metagenome; G_DNA_Supragingival plaque
21873
21800
-
Thr
CGT
[ENA]
¡û
>WENV180889242
ODMN01021762
[ODMN] human metagenome; G_DNA_Supragingival plaque
448
375
-
Thr
CGT
[ENA]
¡û
>WENV180922305
ODTJ01002529
[ODTJ] human metagenome; G_DNA_Supragingival plaque
8200
8273
+
Thr
CGT
[ENA]
¡û
>WENV180924179
ODTK01001629
[ODTK] human metagenome; G_DNA_Supragingival plaque
10720
10647
-
Thr
CGT
[ENA]
¡û
>WENV180927612
ODTM01001695
[ODTM] human metagenome; G_DNA_Supragingival plaque
7188
7113
-
Thr
CGT
[ENA]
¡û
>WENV180927751
ODTM01003283
[ODTM] human metagenome; G_DNA_Supragingival plaque
3112
3039
-
Thr
CGT
[ENA]
¡û
>WENV180928624
ODTM01121121
[ODTM] human metagenome; G_DNA_Supragingival plaque
227
300
+
Thr
CGT
[ENA]
¡û
>WENV180933389
ODTR01000090
[ODTR] human metagenome; G_DNA_Supragingival plaque
40621
40696
+
Thr
CGT
[ENA]
¡û
>WENV180934393
ODTS01000011
[ODTS] human metagenome; G_DNA_Subgingival plaque
64765
64690
-
Thr
CGT
[ENA]
¡û
>WENV180938652
ODTX01004617
[ODTX] human metagenome; G_DNA_Supragingival plaque
4206
4281
+
Thr
CGT
[ENA]
¡û
>WENV180939025
ODTX01012784
[ODTX] human metagenome; G_DNA_Supragingival plaque
2122
2195
+
Thr
CGT
[ENA]
¡û
>WENV180939621
ODTX01058512
[ODTX] human metagenome; G_DNA_Supragingival plaque
685
758
+
Thr
CGT
[ENA]
¡û
>WENV180944158
ODUC01009278
[ODUC] human metagenome; G_DNA_Supragingival plaque
3781
3708
-
Thr
CGT
[ENA]
¡û
>WENV180944969
ODUC01053507
[ODUC] human metagenome; G_DNA_Supragingival plaque
722
649
-
Thr
CGT
[ENA]
¡û
>WENV180958433
ODUL01004625
[ODUL] human metagenome; G_DNA_Supragingival plaque
1342
1417
+
Thr
CGT
[ENA]
¡û
>WENV180963912
ODUO01000027
[ODUO] human metagenome; G_DNA_Supragingival plaque
72723
72648
-
Thr
CGT
[ENA]
¡û
>WENV180973391
ODUW01004664
[ODUW] human metagenome; G_DNA_Supragingival plaque
3618
3545
-
Thr
CGT
[ENA]
¡û
>WENV180980380
ODVE01000091
[ODVE] human metagenome; G_DNA_Supragingival plaque
9434
9507
+
Thr
CGT
[ENA]
¡û
>WENV180982891
ODVF01001306
[ODVF] human metagenome; G_DNA_Supragingival plaque
7367
7440
+
Thr
CGT
[ENA]
¡û
>WENV180987659
ODVK01068357
[ODVK] human metagenome; G_DNA_Supragingival plaque
170
97
-
Thr
CGT
[ENA]
¡û
>WENV180992626
ODVP01069026
[ODVP] human metagenome; G_DNA_Buccal mucosa
164
89
-
Thr
CGT
[ENA]
¡û
>WENV181002223
ODVX01000090
[ODVX] human metagenome; G_DNA_Supragingival plaque
25218
25145
-
Thr
CGT
[ENA]
¡û
>WENV181008202
ODWE01002783
[ODWE] human metagenome; G_DNA_Supragingival plaque
2107
2182
+
Thr
CGT
[ENA]
¡û
>WENV181008323
ODWE01003974
[ODWE] human metagenome; G_DNA_Supragingival plaque
2216
2289
+
Thr
CGT
[ENA]
¡û
>WENV181008862
ODWE01016541
[ODWE] human metagenome; G_DNA_Supragingival plaque
607
534
-
Thr
CGT
[ENA]
¡û
>WENV181012702
ODWK01007728
[ODWK] human metagenome; G_DNA_Supragingival plaque
645
718
+
Thr
CGT
[ENA]
¡û
>WENV181020067
ODWU01045752
[ODWU] human metagenome; G_DNA_Supragingival plaque
30
103
+
Thr
CGT
[ENA]
¡û
>WENV181030131
ODXF01041485
[ODXF] human metagenome; G_DNA_Supragingival plaque
415
488
+
Thr
CGT
[ENA]
¡û
>WENV181049863
ODYD01002772
[ODYD] human metagenome; G_DNA_Supragingival plaque
1522
1447
-
Thr
CGT
[ENA]
¡û
>WENV181050022
ODYD01004673
[ODYD] human metagenome; G_DNA_Supragingival plaque
6
79
+
Thr
CGT
[ENA]
¡û
>WENV181050041
ODYD01005148
[ODYD] human metagenome; G_DNA_Supragingival plaque
1722
1649
-
Thr
CGT
[ENA]
¡û
>WENV181064006
ODYP01007684
[ODYP] human metagenome; G_DNA_Supragingival plaque
3820
3893
+
Thr
CGT
[ENA]
¡û
>WENV181067031
ODZI01005164
[ODZI] human metagenome; G_DNA_Supragingival plaque
1464
1537
+
Thr
CGT
[ENA]
¡û
>WENV181070971
OEAE01053207
[OEAE] human metagenome; G_DNA_Supragingival plaque
216
289
+
Thr
CGT
[ENA]
¡û
>WENV181076208
OEAP01002542
[OEAP] human metagenome; G_DNA_Supragingival plaque
4977
5052
+
Thr
CGT
[ENA]
¡û
>WENV181078981
OEAS01001259
[OEAS] human metagenome; G_DNA_Supragingival plaque
10781
10706
-
Thr
CGT
[ENA]
¡û
>WENV181079129
OEAS01002274
[OEAS] human metagenome; G_DNA_Supragingival plaque
4944
4871
-
Thr
CGT
[ENA]
¡û
>WENV181083003
OEAV01001658
[OEAV] human metagenome; G_DNA_Supragingival plaque
5806
5879
+
Thr
CGT
[ENA]
¡û
>WENV181091548
OEBC01047104
[OEBC] human metagenome; G_DNA_Supragingival plaque
33
106
+
Thr
CGT
[ENA]
¡û
>WENV181107915
OEEI01037700
[OEEI] human metagenome; G_DNA_Supragingival plaque
35
110
+
Thr
CGT
[ENA]
¡û
>WENV181122065
OEFL01062912
[OEFL] human metagenome; G_DNA_Supragingival plaque
36
109
+
Thr
CGT
[ENA]
¡û
>WENV181137977
OEGJ01060794
[OEGJ] human metagenome; G_DNA_Supragingival plaque
235
162
-
Thr
CGT
[ENA]
¡û
>WENV181144136
OEHM01119926
[OEHM] human metagenome; G_DNA_Supragingival plaque
180
107
-
Thr
CGT
[ENA]
¡û
>WENV181146700
OEHQ01018022
[OEHQ] human metagenome; G_DNA_Supragingival plaque
74
1
-
Thr
CGT
[ENA]
¡û
>WENV181152857
OEIA01008261
[OEIA] human metagenome; G_DNA_Supragingival plaque
1747
1820
+
Thr
CGT
[ENA]
¡û
>WENV181156752
OEIE01090091
[OEIE] human metagenome; G_DNA_Supragingival plaque
75
2
-
Thr
CGT
[ENA]
¡û
>WENV181159000
OEIH01027917
[OEIH] human metagenome; G_DNA_Supragingival plaque
791
716
-
Thr
CGT
[ENA]
¡û
>WENV181177360
OEJS01000969
[OEJS] human metagenome; G_DNA_Supragingival plaque
3765
3690
-
Thr
CGT
[ENA]
¡û
>WENV181179000
OEJT01000902
[OEJT] human metagenome; G_DNA_Supragingival plaque
11282
11209
-
Thr
CGT
[ENA]
¡û
>WENV181181748
OEJV01000174
[OEJV] human metagenome; G_DNA_Supragingival plaque
16663
16736
+
Thr
CGT
[ENA]
¡û
>WENV181836725
OGVJ01022823
[OGVJ] freshwater metagenome; freshwater
446
373
-
Thr
CGT
[ENA]
¡û
>WENV181841113
OGVQ01002385
[OGVQ] freshwater metagenome; freshwater
562
489
-
Thr
CGT
[ENA]
¡û
>WENV181847879
OGVZ01000516
[OGVZ] freshwater metagenome; freshwater
2177
2104
-
Thr
CGT
[ENA]
¡û
>WENV181854836
OGWK01025906
[OGWK] freshwater metagenome; freshwater
460
533
+
Thr
CGT
[ENA]
¡û
>WENV183508555
OMHE01000897
[OMHE] human oral metagenome; human oral
547
474
-
Thr
CGT
[ENA]
¡û
>WENV183712614
PDWI01107161
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1993
1920
-
Thr
CGT
[ENA]
¡û
>WENV170690996
LFRM01374722
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
5939
6014
+
Thr
CGT
[ENA]
¡û
>C191173819
CP040007
Actinomycetota
Arachnia propionica F0700 [CP040007]
559919
559992
+
Thr
CGT
-
¡û
>C191210834
LR134406
Actinomycetota
Arachnia propionica NCTC12967 [LR134406]
568242
568315
+
Thr
CGT
-
¡û
>C191214549
LR134535
Actinomycetota
Arachnia propionica NCTC11666 [LR134535]
578467
578540
+
Thr
CGT
-
¡û
>W2010271935
CABKTT020000018
Actinomycetota
Tessaracoccus massiliensis [CABKTT]
20807
20732
-
Thr
CGT
[ENA]
¡û
>W2010521043
JAANIJ010000001
Actinomycetota
Tessaracoccus sp. HDW20 [JAANIJ]
2486827
2486900
+
Thr
CGT
[ENA]
¡û
>W2010739113
JACJFY010000003
Actinomycetota
Tessaracoccus sp. MC1865 [JACJFY]
421353
421278
-
Thr
CGT
[ENA]
¡û
>W2010739131
JACJFZ010000001
Actinomycetota
Tessaracoccus sp. MC1756 [JACJFZ]
265469
265544
+
Thr
CGT
[ENA]
¡û
>W2010739186
JACJGA010000002
Actinomycetota
Tessaracoccus sp. MC1627 [JACJGA]
204252
204327
+
Thr
CGT
[ENA]
¡û
>W2010739235
JACJGB010000002
Actinomycetota
Tessaracoccus sp. MC1679 [JACJGB]
240646
240571
-
Thr
CGT
[ENA]
¡û
>W2011413414
REFW01000001
Actinomycetota
Tessaracoccus sp. JDX10 [REFW]
94019
93946
-
Thr
CGT
[ENA]
¡û
>W2011451031
RKKA01000001
Actinomycetota
Pseudopropionibacterium propionicum FDAARGOS_578 [RKKA]
1353396
1353323
-
Thr
CGT
[ENA]
¡û
>W2011484022
RQYT01000041
Actinomycetota
Pseudopropionibacterium propionicum OH2822_COT-296 [RQYT]
23033
22958
-
Thr
CGT
[ENA]
¡û
>W2011484587
RQZG01000017
Actinomycetota
Pseudopropionibacterium propionicum OH887_COT-365 [RQZG]
59150
59075
-
Thr
CGT
[ENA]
¡û
>W2011951799
UWTZ01000021
Actinomycetota
Pseudopropionibacterium sp. Marseille-P6184 [UWTZ]
25201
25128
-
Thr
CGT
[ENA]
¡û
>C211019769
AP024463
Actinomycetota
Arachnia rubra SK-1 [AP024463]
705386
705461
+
Thr
CGT
-
¡û
>C211307305
CP072384
Actinomycetota
Arachnia rubra DSMZ 100122 [CP072384]
724845
724920
+
Thr
CGT
-
¡û
>C211307379
CP072385
Actinomycetota
Arachnia propionica F0714 [CP072385]
2909948
2909875
-
Thr
CGT
-
¡û
>C211307398
CP072386
Actinomycetota
Arachnia propionica F0231 [CP072386]
538706
538779
+
Thr
CGT
-
¡û
>C211310351
CP072596
Actinomycetota
Tessaracoccus sp. MC1865 [CP072596]
2476290
2476215
-
Thr
CGT
-
¡û
>C211367367
CP079216
Actinomycetota
Tessaracoccus sp. J1M15 [CP079216]
2609169
2609096
-
Thr
CGT
-
¡û
>C211409214
LR214441
Actinomycetota
Tessaracoccus lapidicaptus [LR214441]
2343976
2344049
+
Thr
CGT
-
¡û
>W1510061408
CCYJ01000018
Actinomycetota
Tessaracoccus massiliensis SIT6 [CCYJ]
20807
20732
-
Thr
CGT
[ENA]
¡û
>C121002926
CP002734
Actinomycetota
Arachnia propionica F0230a [CP002734]
561020
561093
+
Thr
CGT
[Ensembl]
¡û
>W1610074504
BCWS01000008
Actinomycetota
Arachnia propionica NBRC 14587 [BCWS]
33529
33602
+
Thr
CGT
[ENA]
¡û
>W1611066150
MBQD01000006
Actinomycetota
Tessaracoccus lapidicaptus [MBQD]
173
246
+
Thr
CGT
[ENA]
¡û
>W1710071622
BCWS01000008
Actinomycetota
Arachnia propionica NBRC 14587 [BCWS]
33529
33602
+
Thr
CGT
[ENA]
¡û
>W1710531792
FNPU01000008
Actinomycetota
Tessaracoccus flavus [FNPU]
56946
57021
+
Thr
CGT
[ENA]
¡û
>W1710588331
FQZG01000030
Actinomycetota
Tessaracoccus bendigoensis DSM 12906 [FQZG]
22446
22373
-
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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