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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.266899 (46 seq.)
>C025732
AE000520
Spirochaetota
Treponema pallidum subsp. pallidum str. Nichols [AE000520]
241889
241961
+
Thr
GGT
[Ensembl]
¡û
>C191179231
CP040555
Spirochaetota
Treponema pallidum subsp. pallidum X-4 [CP040555]
243087
243159
+
Thr
GGT
-
¡û
>C151004480
CP003679
Spirochaetota
Treponema pallidum subsp. pallidum str. Sea 81-4 [CP003679]
243092
243164
+
Thr
GGT
[Ensembl]
¡û
>W2010369528
CAFBSC010000074
Spirochaetota
Treponema pallidum subsp. pertenue R7-PUT1-002 [CAFBSC]
4284
4212
-
Thr
GGT
[ENA]
¡û
>W2010369567
CAFBSD010000052
Spirochaetota
Treponema pallidum subsp. pertenue R8-KOS-007 [CAFBSD]
232
304
+
Thr
GGT
[ENA]
¡û
>W2010369605
CAFBSE010000051
Spirochaetota
Treponema pallidum subsp. pertenue R2-64919 [CAFBSE]
3813
3741
-
Thr
GGT
[ENA]
¡û
>W2010369670
CAGKKW010000018
Spirochaetota
Treponema pallidum subsp. pertenue R3-SAL-007 [CAGKKW]
16877
16805
-
Thr
GGT
[ENA]
¡û
>W2010369694
CAGKKX010000050
Spirochaetota
Treponema pallidum subsp. pertenue R2-106190 [CAGKKX]
3150
3078
-
Thr
GGT
[ENA]
¡û
>W2010369735
CAGKKY010000010
Spirochaetota
Treponema pallidum subsp. pertenue R7-KUN2-001 [CAGKKY]
12706
12634
-
Thr
GGT
[ENA]
¡û
>W2011168216
OMHU01000012
Spirochaetota
Treponema pallidum A12 [OMHU]
15296
15368
+
Thr
GGT
[ENA]
¡û
>W2011168259
OMHW01000002
Spirochaetota
Treponema pallidum BNK07 [OMHW]
76181
76253
+
Thr
GGT
[ENA]
¡û
>W2011168305
OMHZ01000023
Spirochaetota
Treponema pallidum SNK05 [OMHZ]
1883
1955
+
Thr
GGT
[ENA]
¡û
>W2011169286
OMPM01000001
Spirochaetota
Treponema pallidum A10 [OMPM]
243009
243081
+
Thr
GGT
[ENA]
¡û
>C231360386
CP095415
Spirochaetota
Treponema pallidum subsp. pallidum TpN-CL8 [CP095415]
243050
243122
+
Thr
GGT
-
¡û
>C231360430
CP095416
Spirochaetota
Treponema pallidum subsp. pallidum TpN-CL5 [CP095416]
243048
243120
+
Thr
GGT
-
¡û
>C231360474
CP095417
Spirochaetota
Treponema pallidum subsp. pallidum TpN-CL4 [CP095417]
243112
243184
+
Thr
GGT
-
¡û
>C231360518
CP095418
Spirochaetota
Treponema pallidum subsp. pallidum TpN-CL3 [CP095418]
243110
243182
+
Thr
GGT
-
¡û
>C231360562
CP095419
Spirochaetota
Treponema pallidum subsp. pallidum TpN-CL2 [CP095419]
243050
243122
+
Thr
GGT
-
¡û
>C231360606
CP095420
Spirochaetota
Treponema pallidum subsp. pallidum TpN-CL1 [CP095420]
241912
241984
+
Thr
GGT
-
¡û
>C241187261
CP094202
Spirochaetota
Treponema pallidum subsp. pertenue 6RUM2090716 [CP094202]
242991
243063
+
Thr
GGT
-
¡û
>C241187306
CP094268
Spirochaetota
Treponema pallidum subsp. pertenue 19LMF8280815 [CP094268]
242997
243069
+
Thr
GGT
-
¡û
>C241187958
CP094485
Spirochaetota
Treponema pallidum subsp. pertenue 22LMF5290815 [CP094485]
243016
243088
+
Thr
GGT
-
¡û
>C241188003
CP094486
Spirochaetota
Treponema pallidum subsp. pertenue 24SNM5151115 [CP094486]
243009
243081
+
Thr
GGT
-
¡û
>C241192386
CP097901
Spirochaetota
Treponema paraluiscuniculi L2 [CP097901]
242287
242359
+
Thr
GGT
-
¡û
>C10113581
CP001752
Spirochaetota
Treponema pallidum subsp. pallidum str. Chicago [CP001752]
243111
243183
+
Thr
GGT
[Ensembl]
¡û
>C10113625
CP000805
Spirochaetota
Treponema pallidum subsp. pallidum SS14 [CP000805]
243072
243144
+
Thr
GGT
[Ensembl]
¡û
>C11122891
CP002103
Spirochaetota
Treponema paraluiscuniculi Cuniculi A [CP002103]
240468
240540
+
Thr
GGT
[Ensembl]
¡û
>C121002399
CP002374
Spirochaetota
Treponema pallidum subsp. pertenue str. SamoaD [CP002374]
242657
242729
+
Thr
GGT
[Ensembl]
¡û
>C121002444
CP002375
Spirochaetota
Treponema pallidum subsp. pertenue str. CDC2 [CP002375]
243003
243075
+
Thr
GGT
[Ensembl]
¡û
>C121002489
CP002376
Spirochaetota
Treponema pallidum subsp. pertenue str. Gauthier [CP002376]
242973
243045
+
Thr
GGT
[Ensembl]
¡û
>C121006094
CP003115
Spirochaetota
Treponema pallidum subsp. pallidum DAL-1 [CP003115]
243099
243171
+
Thr
GGT
[Ensembl]
¡û
>C161017252
CP007548
Spirochaetota
Treponema pallidum subsp. endemicum str. Bosnia A [CP007548]
243012
243084
+
Thr
GGT
[Ensembl]
¡û
>C161028017
CP010558
Spirochaetota
Treponema pallidum subsp. pallidum Chicago Population [CP010558]
243014
243086
+
Thr
GGT
-
¡û
>C161028061
CP010559
Spirochaetota
Treponema pallidum subsp. pallidum CDC-A [CP010559]
243014
243086
+
Thr
GGT
-
¡û
>C161028105
CP010560
Spirochaetota
Treponema pallidum subsp. pallidum Nichols Houston [CP010560]
241908
241980
+
Thr
GGT
-
¡û
>C161028149
CP010561
Spirochaetota
Treponema pallidum subsp. pallidum Nichols Houston [CP010561]
242952
243024
+
Thr
GGT
-
¡û
>C161028193
CP010562
Spirochaetota
Treponema pallidum subsp. pallidum UW074B [CP010562]
243091
243163
+
Thr
GGT
-
¡û
>C161028237
CP010563
Spirochaetota
Treponema pallidum subsp. pallidum UW189B [CP010563]
243106
243178
+
Thr
GGT
-
¡û
>C161028282
CP010564
Spirochaetota
Treponema pallidum subsp. pallidum UW228B [CP010564]
243087
243159
+
Thr
GGT
-
¡û
>C161028326
CP010565
Spirochaetota
Treponema pallidum subsp. pallidum UW254B [CP010565]
243087
243159
+
Thr
GGT
-
¡û
>C161028370
CP010566
Spirochaetota
Treponema pallidum subsp. pallidum UW391B [CP010566]
243083
243155
+
Thr
GGT
-
¡û
>C161084176
CP015162
Spirochaetota
Treponema pallidum subsp. pallidum Amoy [CP015162]
106704
106776
+
Thr
GGT
-
¡û
>C131001856
CP003064
Spirochaetota
Treponema pallidum subsp. pallidum str. Mexico A [CP003064]
243098
243170
+
Thr
GGT
[Ensembl]
¡û
>C131009487
CP003902
Spirochaetota
Treponema pallidum str. Fribourg-Blanc [CP003902]
243010
243082
+
Thr
GGT
[Ensembl]
¡û
>C131011348
CP004010
Spirochaetota
Treponema pallidum subsp. pallidum str. Nichols [CP004010]
243045
243117
+
Thr
GGT
-
¡û
>C131011392
CP004011
Spirochaetota
Treponema pallidum subsp. pallidum SS14 [CP004011]
243087
243159
+
Thr
GGT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK