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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.268904 (136 seq.)
>W1710799936
LJVG01000040
Gammaproteobacteria
Colwellia sp. MT2012 [LJVG]
37372
37297
-
His
GTG
[ENA]
¡û
>W1710799943
LJVG01000044
Gammaproteobacteria
Colwellia sp. MT2012 [LJVG]
71613
71688
+
His
GTG
[ENA]
¡û
>W1711308704
MAQE01000002
Gammaproteobacteria
Aggregatibacter aphrophilus [MAQE]
69984
70059
+
His
GTG
[ENA]
¡û
>W1711308785
MAQF01000031
Gammaproteobacteria
Aggregatibacter aphrophilus [MAQF]
253
178
-
His
GTG
[ENA]
¡û
>W131177223
ARKQ01000021
Gammaproteobacteria
Colwellia piezophila ATCC BAA-637 [ARKQ]
552
477
-
His
GTG
[ENA]
¡û
>W131177265
ARKQ01000048
Gammaproteobacteria
Colwellia piezophila ATCC BAA-637 [ARKQ]
15577
15652
+
His
GTG
[ENA]
¡û
>W1711624657
MPHL01000004
Gammaproteobacteria
Colwellia sp. UCD-KL20 [MPHL]
57925
57850
-
His
GTG
[ENA]
¡û
>W1711767368
MUZU01000001
Gammaproteobacteria
Pseudocolwellia agarivorans QM50 [MUZU]
402914
402839
-
His
GTG
[ENA]
¡û
>W1711767387
MUZU01000005
Gammaproteobacteria
Pseudocolwellia agarivorans QM50 [MUZU]
269620
269545
-
His
GTG
[ENA]
¡û
>W1711767422
MUZV01000001
Gammaproteobacteria
Cognaticolwellia aestuarii [MUZV]
439410
439485
+
His
GTG
[ENA]
¡û
>W1711767447
MUZV01000004
Gammaproteobacteria
Cognaticolwellia aestuarii [MUZV]
162259
162184
-
His
GTG
[ENA]
¡û
>W1711947543
NBOE01000001
Gammaproteobacteria
Colwellia polaris [NBOE]
245364
245289
-
His
GTG
[ENA]
¡û
>W1711947546
NBOE01000002
Gammaproteobacteria
Colwellia polaris [NBOE]
411245
411320
+
His
GTG
[ENA]
¡û
>W1711947636
NBOF01000003
Gammaproteobacteria
Cognaticolwellia mytili [NBOF]
476740
476815
+
His
GTG
[ENA]
¡û
>W1711947674
NBOF01000007
Gammaproteobacteria
Cognaticolwellia mytili [NBOF]
25832
25907
+
His
GTG
[ENA]
¡û
>W1711947700
NBOG01000002
Gammaproteobacteria
Cognaticolwellia sediminilitoris [NBOG]
208231
208306
+
His
GTG
[ENA]
¡û
>W1711947727
NBOG01000005
Gammaproteobacteria
Cognaticolwellia sediminilitoris [NBOG]
249869
249944
+
His
GTG
[ENA]
¡û
>W1711956701
NBTN01000001
Gammaproteobacteria
Aggregatibacter aphrophilus [NBTN]
1456388
1456313
-
His
GTG
[ENA]
¡û
>C171034451
CP014943
Gammaproteobacteria
Colwellia sp. PAMC 21821 [CP014943]
1674474
1674549
+
His
GTG
-
¡û
>C171034462
CP014943
Gammaproteobacteria
Colwellia sp. PAMC 21821 [CP014943]
3087341
3087416
+
His
GTG
-
¡û
>W131230218
AUHL01000004
Gammaproteobacteria
Pseudidiomarina sediminum DSM 21906 [AUHL]
78294
78369
+
His
GTG
[ENA]
¡û
>C006819
CP000083
Gammaproteobacteria
Colwellia psychrerythraea 34H 34H; BAA-681 [CP000083]
4912381
4912456
+
His
GTG
[Ensembl]
¡û
>C006833
CP000083
Gammaproteobacteria
Colwellia psychrerythraea 34H 34H; BAA-681 [CP000083]
3953300
3953225
-
His
GTG
[Ensembl]
¡û
>WENV180585217
OCOK01039967
[OCOK] marine metagenome; ENVO:00002010
157
82
-
His
GTG
[ENA]
¢þ
>W141067271
ARZY01000126
Gammaproteobacteria
Catenovulum agarivorans DS-2 [ARZY]
157
232
+
His
GTG
[ENA]
¡û
>WENV180781458
ODIP01000120
[ODIP] human metagenome; G_DNA_Supragingival plaque
386
311
-
His
GTG
[ENA]
¢þ
>WENV180801182
ODJD01011758
[ODJD] human metagenome; G_DNA_Supragingival plaque
1286
1361
+
His
GTG
[ENA]
¢þ
>WENV180845757
ODKT01001942
[ODKT] human metagenome; G_DNA_Supragingival plaque
336
261
-
His
GTG
[ENA]
¢þ
>WENV180928376
ODTM01038485
[ODTM] human metagenome; G_DNA_Supragingival plaque
155
80
-
His
GTG
[ENA]
¢þ
>WENV180964118
ODUO01000292
[ODUO] human metagenome; G_DNA_Supragingival plaque
31692
31767
+
His
GTG
[ENA]
¢þ
>WENV181107390
OEEI01006557
[OEEI] human metagenome; G_DNA_Supragingival plaque
3949
4024
+
His
GTG
[ENA]
¢þ
>WENV181177829
OEJS01021042
[OEJS] human metagenome; G_DNA_Supragingival plaque
240
165
-
His
GTG
[ENA]
¢þ
>WENV181178774
OEJT01000244
[OEJT] human metagenome; G_DNA_Supragingival plaque
45124
45199
+
His
GTG
[ENA]
¢þ
>WENV181319819
OFKE01031764
[OFKE] marine metagenome; seawater
192
267
+
His
GTG
[ENA]
¢þ
>WENV182540187
OJAE01001402
[OJAE] seawater metagenome; Sea water
159
234
+
His
GTG
[ENA]
¢þ
>WENV182543448
OJBB01000275
[OJBB] seawater metagenome; Sea water
8149
8224
+
His
GTG
[ENA]
¢þ
>WENV182546324
OJBO01009610
[OJBO] seawater metagenome; Sea water
1034
959
-
His
GTG
[ENA]
¢þ
>WENV182547804
OJBT01007851
[OJBT] seawater metagenome; Sea water
128
53
-
His
GTG
[ENA]
¢þ
>WENV182549235
OJBY01000023
[OJBY] seawater metagenome; Sea water
90490
90565
+
His
GTG
[ENA]
¢þ
>WENV182558602
OJDN01000004
[OJDN] seawater metagenome; Sea water
22103
22028
-
His
GTG
[ENA]
¢þ
>WENV182558610
OJDN01000015
[OJDN] seawater metagenome; Sea water
64137
64062
-
His
GTG
[ENA]
¢þ
>WENV182564710
OJEF01003871
[OJEF] seawater metagenome; Sea water
423
348
-
His
GTG
[ENA]
¢þ
>WENV182565210
OJEH01000426
[OJEH] seawater metagenome; Sea water
2463
2538
+
His
GTG
[ENA]
¢þ
>WENV182565828
OJEI01000043
[OJEI] seawater metagenome; Sea water
6880
6955
+
His
GTG
[ENA]
¢þ
>WENV182566077
OJEJ01000021
[OJEJ] seawater metagenome; Sea water
11500
11425
-
His
GTG
[ENA]
¢þ
>WENV182568282
OJET01000030
[OJET] seawater metagenome; Sea water
42516
42441
-
His
GTG
[ENA]
¢þ
>WENV182568707
OJEW01000765
[OJEW] seawater metagenome; Sea water
140
65
-
His
GTG
[ENA]
¢þ
>WENV182574707
OJFS01000610
[OJFS] seawater metagenome; Sea water
11534
11459
-
His
GTG
[ENA]
¢þ
>WENV182574808
OJFS01001903
[OJFS] seawater metagenome; Sea water
1194
1269
+
His
GTG
[ENA]
¢þ
>WENV182574822
OJFS01002449
[OJFS] seawater metagenome; Sea water
1194
1269
+
His
GTG
[ENA]
¢þ
>WENV182575506
OJFV01000011
[OJFV] seawater metagenome; Sea water
84019
84094
+
His
GTG
[ENA]
¢þ
>WENV182575519
OJFV01000025
[OJFV] seawater metagenome; Sea water
136564
136489
-
His
GTG
[ENA]
¢þ
>WENV182584344
OJHG01000019
[OJHG] seawater metagenome; Sea water
45447
45372
-
His
GTG
[ENA]
¢þ
>WENV182585197
OJHH01003228
[OJHH] seawater metagenome; Sea water
1946
1871
-
His
GTG
[ENA]
¢þ
>WENV182587435
OJHM01006682
[OJHM] seawater metagenome; Sea water
775
850
+
His
GTG
[ENA]
¢þ
>WENV182588151
OJHO01008851
[OJHO] seawater metagenome; Sea water
987
912
-
His
GTG
[ENA]
¢þ
>WENV182588654
OJHV01009114
[OJHV] seawater metagenome; Sea water
325
400
+
His
GTG
[ENA]
¢þ
>WENV182594026
OJIV01000075
[OJIV] seawater metagenome; Sea water
3883
3958
+
His
GTG
[ENA]
¢þ
>WENV183055479
OLHD01000004
[OLHD] seawater metagenome; Sea water
53188
53263
+
His
GTG
[ENA]
¢þ
>WENV183055490
OLHD01000021
[OLHD] seawater metagenome; Sea water
38212
38137
-
His
GTG
[ENA]
¢þ
>WENV183057583
OLHL01012481
[OLHL] seawater metagenome; Sea water
317
242
-
His
GTG
[ENA]
¢þ
>WENV183057625
OLHM01000011
[OLHM] seawater metagenome; Sea water
36699
36624
-
His
GTG
[ENA]
¢þ
>WENV183057787
OLHM01004902
[OLHM] seawater metagenome; Sea water
905
980
+
His
GTG
[ENA]
¢þ
>WENV183057998
OLHN01000466
[OLHN] seawater metagenome; Sea water
3185
3110
-
His
GTG
[ENA]
¢þ
>WENV183059759
OLHV01002478
[OLHV] seawater metagenome; Sea water
2437
2512
+
His
GTG
[ENA]
¢þ
>WENV170015983
AZIJ01006085
[AZIJ] marine sediment metagenome; enrichment culture of sample MGS-ElMAX(UA) from oil contaminated site at the El-Max
1001
1076
+
His
GTG
[ENA]
¢þ
>WENV170647084
JQIA01010051
[JQIA] marine sediment metagenome; oil-polluted sediment collected from 3 locations (0.5 km, 0.7 km and 0.9 km) around wellhead
4630
4702
+
His
GTG
[ENA]
¢þ
>WENV170704256
LLEJ01000677
[LLEJ] bioreactor metagenome; day101 10degC chemostat 2011 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
1660
1735
+
His
GTG
[ENA]
¢þ
>WENV170780339
MAAA01029165
[MAAA] seawater metagenome; sample BD02T6 sea water enriched with oil for 6 days
452
527
+
His
GTG
[ENA]
¢þ
>WENV170780408
MAAB01000920
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
135
210
+
His
GTG
[ENA]
¢þ
>WENV170780442
MAAB01001227
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
78376
78451
+
His
GTG
[ENA]
¢þ
>WENV170780447
MAAB01001252
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
14204
14279
+
His
GTG
[ENA]
¢þ
>WENV170780531
MAAB01004683
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
7143
7068
-
His
GTG
[ENA]
¢þ
>WENV170780542
MAAB01004882
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
1948
1873
-
His
GTG
[ENA]
¢þ
>WENV170780551
MAAB01005093
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
478
553
+
His
GTG
[ENA]
¢þ
>WENV170780638
MAAB01010314
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
2119
2044
-
His
GTG
[ENA]
¢þ
>WENV170780653
MAAB01010733
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
743
668
-
His
GTG
[ENA]
¢þ
>WENV170878553
MDTC01078940
[MDTC] marine metagenome; seawater
2225
2299
+
His
GTG
[ENA]
¢þ
>C181169919
CP028924
Gammaproteobacteria
Colwellia sp. Arc7-D [CP028924]
1059245
1059320
+
His
GTG
-
¡û
>C181169942
CP028924
Gammaproteobacteria
Colwellia sp. Arc7-D [CP028924]
4015655
4015730
+
His
GTG
-
¡û
>C181216662
LS483485
Gammaproteobacteria
Aggregatibacter aphrophilus NCTC11096 [LS483485]
1795805
1795730
-
His
GTG
-
¡û
>C191128328
CP034660
Gammaproteobacteria
Colwellia sp. Arc7-635 [CP034660]
1079851
1079926
+
His
GTG
-
¡û
>C191128353
CP034660
Gammaproteobacteria
Colwellia sp. Arc7-635 [CP034660]
4464735
4464810
+
His
GTG
-
¡û
>C191160544
CP038493
Gammaproteobacteria
Thalassotalea sp. HSM 43 [CP038493]
2019154
2019229
+
His
GTG
-
¡û
>C191160555
CP038493
Gammaproteobacteria
Thalassotalea sp. HSM 43 [CP038493]
2934020
2934095
+
His
GTG
-
¡û
>C191206883
LR134327
Gammaproteobacteria
Aggregatibacter aphrophilus ATCC 33389 NCTC5906 [LR134327]
467816
467741
-
His
GTG
-
¡û
>C09100009
CP001607
Gammaproteobacteria
Aggregatibacter aphrophilus NJ8700 [CP001607]
591389
591464
+
His
GTG
[Ensembl]
¡û
>W1911138217
NOXC01000013
Gammaproteobacteria
Cellvibrionaceae bacterium AOL6 [NOXC]
79318
79393
+
His
GTG
[ENA]
¡û
>W1911198368
NRCK01000011
Gammaproteobacteria
Aggregatibacter kilianii PN_755 [NRCK]
63593
63668
+
His
GTG
[ENA]
¡û
>W1911198421
NRCL01000014
Gammaproteobacteria
Aggregatibacter kilianii PN_649 [NRCL]
25489
25564
+
His
GTG
[ENA]
¡û
>W1911198465
NRCM01000011
Gammaproteobacteria
Aggregatibacter kilianii PN_537 [NRCM]
63593
63668
+
His
GTG
[ENA]
¡û
>W1911198495
NRCN01000001
Gammaproteobacteria
Aggregatibacter kilianii PN_528 [NRCN]
1965501
1965576
+
His
GTG
[ENA]
¡û
>W1911198570
NRCO01000011
Gammaproteobacteria
Aggregatibacter kilianii PN_522 [NRCO]
63593
63668
+
His
GTG
[ENA]
¡û
>W1911198667
NRCQ01000010
Gammaproteobacteria
Aggregatibacter kilianii PN_452 [NRCQ]
63587
63662
+
His
GTG
[ENA]
¡û
>W1911198717
NRCR01000013
Gammaproteobacteria
Aggregatibacter kilianii Melo94 [NRCR]
63593
63668
+
His
GTG
[ENA]
¡û
>W1911198768
NRCS01000012
Gammaproteobacteria
Aggregatibacter kilianii Melo83 [NRCS]
63593
63668
+
His
GTG
[ENA]
¡û
>W1911198816
NRCT01000013
Gammaproteobacteria
Aggregatibacter kilianii Melo68 [NRCT]
63593
63668
+
His
GTG
[ENA]
¡û
>W1911199059
NRCY01000007
Gammaproteobacteria
Aggregatibacter aphrophilus PN_521 [NRCY]
98105
98180
+
His
GTG
[ENA]
¡û
>W1911199170
NRDA01000018
Gammaproteobacteria
Aggregatibacter aphrophilus PN_444 [NRDA]
26433
26508
+
His
GTG
[ENA]
¡û
>W1911199210
NRDB01000011
Gammaproteobacteria
Aggregatibacter aphrophilus HK_319 [NRDB]
70792
70867
+
His
GTG
[ENA]
¡û
>W1911199262
NRDC01000008
Gammaproteobacteria
Aggregatibacter aphrophilus CCUG 11575 [NRDC]
263
188
-
His
GTG
[ENA]
¡û
>W1911585256
PIPT01000005
Gammaproteobacteria
Pseudidiomarina aquimaris SW15 [PIPT]
155309
155384
+
His
GTG
[ENA]
¡û
>W1911585281
PIPU01000001
Gammaproteobacteria
Pseudidiomarina donghaiensis 908033 [PIPU]
637580
637655
+
His
GTG
[ENA]
¡û
>W1911585450
PIPX01000001
Gammaproteobacteria
Pseudidiomarina homiensis PO-M2 [PIPX]
992178
992103
-
His
GTG
[ENA]
¡û
>W1911585545
PIPZ01000001
Gammaproteobacteria
Pseudidiomarina marina PIM1 [PIPZ]
981947
981872
-
His
GTG
[ENA]
¡û
>W1911585794
PIQE01000001
Gammaproteobacteria
Pseudidiomarina sediminum c121 [PIQE]
583515
583440
-
His
GTG
[ENA]
¡û
>W1911585974
PIQJ01000001
Gammaproteobacteria
Pseudidiomarina tainanensis PIN1 [PIQJ]
777813
777888
+
His
GTG
[ENA]
¡û
>W1911696684
QMGS01000043
Gammaproteobacteria
Aggregatibacter aphrophilus HK83 [QMGS]
609
534
-
His
GTG
[ENA]
¡û
>W1810155082
PJAI01000022
Gammaproteobacteria
Colwellia echini A3T [PJAI]
152184
152109
-
His
GTG
[ENA]
¡û
>W1810155130
PJAI01000122
Gammaproteobacteria
Colwellia echini A3T [PJAI]
370584
370509
-
His
GTG
[ENA]
¡û
>W1810155548
PJAU01000032
Gammaproteobacteria
Colwellia sp. 75C3 [PJAU]
485841
485766
-
His
GTG
[ENA]
¡û
>W1810155552
PJAU01000033
Gammaproteobacteria
Colwellia sp. 75C3 [PJAU]
401236
401161
-
His
GTG
[ENA]
¡û
>W1810155982
PJBA01000006
Gammaproteobacteria
Colwellia sp. Bg11-28 [PJBA]
125381
125456
+
His
GTG
[ENA]
¡û
>W1810156037
PJBA01000018
Gammaproteobacteria
Colwellia sp. Bg11-28 [PJBA]
938181
938256
+
His
GTG
[ENA]
¡û
>W1810578654
QEPV01000013
Gammaproteobacteria
Aggregatibacter aphrophilus C2008001229 [QEPV]
38065
38140
+
His
GTG
[ENA]
¡û
>W1810578753
QEPX01000009
Gammaproteobacteria
Aggregatibacter aphrophilus C2008001782 [QEPX]
63870
63945
+
His
GTG
[ENA]
¡û
>W1810578802
QEPY01000008
Gammaproteobacteria
Aggregatibacter aphrophilus C2008003249 [QEPY]
66244
66319
+
His
GTG
[ENA]
¡û
>W1810578896
QEQA01000007
Gammaproteobacteria
Aggregatibacter aphrophilus C2009017515 [QEQA]
66244
66319
+
His
GTG
[ENA]
¡û
>W1810579012
QEQC01000010
Gammaproteobacteria
Aggregatibacter aphrophilus C2010020251 [QEQC]
70048
70123
+
His
GTG
[ENA]
¡û
>W1810735860
QOLD01000013
Gammaproteobacteria
Candidatus Colwellia aromaticivorans Bin11-node4 [QOLD]
3757
3682
-
His
GTG
[ENA]
¡û
>W1810735903
QOLD01000069
Gammaproteobacteria
Candidatus Colwellia aromaticivorans Bin11-node4 [QOLD]
24591
24666
+
His
GTG
[ENA]
¡û
>C151046071
CP009230
Gammaproteobacteria
Aggregatibacter aphrophilus NJ8700 [CP009230]
591381
591456
+
His
GTG
-
¡û
>C151090311
CP012067
Gammaproteobacteria
Aggregatibacter aphrophilus W10433 [CP012067]
1526397
1526472
+
His
GTG
-
¡û
>W11109771
ACZJ01000002
Gammaproteobacteria
Aggregatibacter aphrophilus F0387 [ACZJ]
65062
65137
+
His
GTG
[ENA]
¡û
>W1510741074
CYHB01000001
Gammaproteobacteria
Pseudidiomarina woesei DSM 27808 [CYHB]
648344
648269
-
His
GTG
[ENA]
¡û
>W1511586709
LAZL01000009
Gammaproteobacteria
Catenovulum maritimum Q1 [LAZL]
33947
33872
-
His
GTG
[ENA]
¡û
>W11150759
AEWB01000007
Gammaproteobacteria
Aggregatibacter aphrophilus ATCC 33389 [AEWB]
181
106
-
His
GTG
[ENA]
¡û
>W121070152
AJWM01000019
Gammaproteobacteria
Catenovulum agarivorans YM01 [AJWM]
26719
26644
-
His
GTG
[ENA]
¡û
>W1610632467
LIPW01000001
Gammaproteobacteria
Pseudidiomarina woesei [LIPW]
648344
648269
-
His
GTG
[ENA]
¡û
>W1610663893
LJVG01000040
Gammaproteobacteria
Colwellia sp. MT2012 [LJVG]
37372
37297
-
His
GTG
[ENA]
¡û
>W1610663900
LJVG01000044
Gammaproteobacteria
Colwellia sp. MT2012 [LJVG]
71613
71688
+
His
GTG
[ENA]
¡û
>W1611056361
MAQE01000002
Gammaproteobacteria
Aggregatibacter aphrophilus [MAQE]
69984
70059
+
His
GTG
[ENA]
¡û
>W1611056442
MAQF01000031
Gammaproteobacteria
Aggregatibacter aphrophilus [MAQF]
253
178
-
His
GTG
[ENA]
¡û
>W1710579246
FPCF01000001
Gammaproteobacteria
Pseudidiomarina donghaiensis [FPCF]
636724
636799
+
His
GTG
[ENA]
¡û
>W1710609240
FXWH01000001
Gammaproteobacteria
Pseudidiomarina planktonica [FXWH]
898076
898151
+
His
GTG
[ENA]
¡û
>W1710766853
LIPW01000001
Gammaproteobacteria
Pseudidiomarina woesei [LIPW]
648344
648269
-
His
GTG
[ENA]
¡û
Select
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(or Accession No.)
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(Sample source for ENV)
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Direction
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Representative sequence of each cluster
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