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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.269372 (47 seq.)
>W1711183472
LWLB01000001
Actinomycetota
Nocardiopsis sp. TSRI0078 [LWLB]
148857
148784
-
Trp
CCA
[ENA]
¡û
>W1711346041
MCOK01000001
Actinomycetota
Nocardiopsis sinuspersici [MCOK]
5859621
5859694
+
Trp
CCA
[ENA]
¡û
>W131227567
AUFG01000012
Actinomycetota
Arsenicicoccus bolidensis DSM 15745 [AUFG]
4096
4023
-
Trp
CCA
[ENA]
¡û
>W131053504
ANAC01000022
Actinomycetota
Nocardiopsis alba DSM 43377 [ANAC]
74168
74093
-
Trp
CCA
[ENA]
¡û
>W131053578
ANAE01000083
Actinomycetota
Nocardiopsis prasina DSM 43845 [ANAE]
15443
15368
-
Trp
CCA
[ENA]
¡û
>W131054815
ANBA01000013
Actinomycetota
Nocardiopsis ganjiahuensis DSM 45031 [ANBA]
335651
335726
+
Trp
CCA
[ENA]
¡û
>W131054927
ANBC01000295
Actinomycetota
Nocardiopsis lucentensis DSM 44048 [ANBC]
12277
12350
+
Trp
CCA
[ENA]
¡û
>W131054972
ANBD01000047
Actinomycetota
Nocardiopsis alkaliphila YIM 80379 [ANBD]
19101
19176
+
Trp
CCA
[ENA]
¡û
>W131055118
ANBF01000181
Actinomycetota
Nocardiopsis salina YIM 90010 [ANBF]
12405
12478
+
Trp
CCA
[ENA]
¡û
>W131179364
ARMI01000045
Actinomycetota
Nocardiopsis sp. CNS-639 CNS639 [ARMI]
50473
50546
+
Trp
CCA
[ENA]
¡û
>WENV180283934
OBID01006824
[OBID] metagenome; sludge
610
683
+
Trp
CCA
[ENA]
¢þ
>WENV180343334
OBLK01004066
[OBLK] soil metagenome; Clay
900
827
-
Trp
CCA
[ENA]
¢þ
>w001916
AAAQ02000008
Actinomycetota
Thermobifida fusca [AAAQ]
85266
85194
-
Trp
CCA
[ENA]
¡û
>WENV181165955
OEIS01323006
[OEIS] soil metagenome; soil
38
111
+
Trp
CCA
[ENA]
¢þ
>WENV181185945
OEMH01001155
[OEMH] metagenome; 1998
1483
1556
+
Trp
CCA
[ENA]
¢þ
>WENV181188712
OEOE01302222
[OEOE] activated sludge metagenome; Activated Sludge
46
119
+
Trp
CCA
[ENA]
¢þ
>WENV181296369
OFHJ01029492
[OFHJ] soil metagenome; Clay
808
735
-
Trp
CCA
[ENA]
¢þ
>WENV181297947
OFHL01007577
[OFHL] soil metagenome; Clay
1250
1177
-
Trp
CCA
[ENA]
¢þ
>WENV181390316
OFRO01038644
[OFRO] wastewater metagenome; Exp Tend NO 10WW
672
745
+
Trp
CCA
[ENA]
¢þ
>WENV181406702
OGCG01000963
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
15153
15080
-
Trp
CCA
[ENA]
¢þ
>W141219665
AZXF01000005
Actinomycetota
Nocardiopsis sp. CNT312 [AZXF]
53317
53242
-
Trp
CCA
[ENA]
¡û
>W141236332
BAZE01000003
Actinomycetota
Nocardiopsis alba TP-A0876 [BAZE]
154776
154701
-
Trp
CCA
[ENA]
¡û
>WENV183748594
PPFU01057117
[PPFU] hypolithon metagenome; Antarctic Hypolithon
1190
1263
+
Trp
CCA
[ENA]
¢þ
>WENV170552304
CXWJ01053961
[CXWJ] wastewater metagenome; activated sludge
1549
1474
-
Trp
CCA
[ENA]
¢þ
>WENV170553428
CXWK01018023
[CXWK] wastewater metagenome; activated sludge
1583
1508
-
Trp
CCA
[ENA]
¢þ
>WENV170574436
FLYM01037951
[FLYM] hot springs metagenome; Sediment
135
208
+
Trp
CCA
[ENA]
¢þ
>WENV170771785
LXNI01004025
[LXNI] sponge metagenome; marine sponge reef
66
141
+
Trp
CCA
[ENA]
¢þ
>WENV170772642
LXNJ01000208
[LXNJ] sponge metagenome; marine sponge reef
40441
40366
-
Trp
CCA
[ENA]
¢þ
>WENV170959136
MKWU01003192
[MKWU] sponge metagenome;
3583
3658
+
Trp
CCA
[ENA]
¢þ
>WENV170971397
MTKX01004830
[MTKX] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1893
1968
+
Trp
CCA
[ENA]
¢þ
>WENV170977130
MTKZ01017262
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
2006
1931
-
Trp
CCA
[ENA]
¢þ
>W09108097
ABSZ01000005
Actinomycetota
Acidimicrobium ferrooxidans DSM 10331 [ABSZ]
124022
123949
-
Trp
CCA
[ENA]
¡û
>C181200536
CP031447
Actinomycetota
Austwickia chelonae LK16-18 [CP031447]
2235282
2235209
-
Trp
CCA
-
¡û
>C191212891
LR134501
Actinomycetota
Nocardiopsis dassonvillei NCTC10488 [LR134501]
4835943
4836016
+
Trp
CCA
-
¡û
>C09100421
CP001631
Actinomycetota
Acidimicrobium ferrooxidans DSM 10331 [CP001631]
396011
396084
+
Trp
CCA
[Ensembl]
¡û
>W1810046860
NYMS01000048
Actinomycetota
Glycomyces fuscus TRM 49117 [NYMS]
479041
479114
+
Trp
CCA
[ENA]
¡û
>W1810608316
QGTF01000007
Actinomycetota
Nocardiopsis sp. L17-MgMaSL7 [QGTF]
290992
291065
+
Trp
CCA
[ENA]
¡û
>W1810705029
QMIG01000037
Actinomycetota
Phytoactinopolyspora halophila YIM 96934 [QMIG]
31461
31388
-
Trp
CCA
[ENA]
¡û
>C151090449
CP012070
Actinomycetota
Arsenicicoccus sp. oral taxon 190 F0371 [CP012070]
1681748
1681821
+
Trp
CCA
-
¡û
>W11155937
AFAQ01001095
Actinomycetota
Rhodococcus sp. R04 [AFAQ]
2098
2025
-
Trp
CCA
[ENA]
¡û
>W1511697712
LGEC01000089
Actinomycetota
Nocardiopsis sp. NRRL B-16309 [LGEC]
26307
26380
+
Trp
CCA
[ENA]
¡û
>W1610069191
BCSH01000002
Actinomycetota
Nocardiopsis listeri NBRC 13360 [BCSH]
92884
92959
+
Trp
CCA
[ENA]
¡û
>W121126443
BAGZ01000008
Actinomycetota
Austwickia chelonae NBRC 105200 [BAGZ]
371668
371741
+
Trp
CCA
[ENA]
¡û
>C131006721
CP003788
Actinomycetota
Nocardiopsis alba ATCC BAA-2165 [CP003788]
2790575
2790650
+
Trp
CCA
[Ensembl]
¡û
>W1710066564
BCSH01000002
Actinomycetota
Nocardiopsis listeri NBRC 13360 [BCSH]
92884
92959
+
Trp
CCA
[ENA]
¡û
>W1710555143
FOJD01000001
Actinomycetota
Austwickia chelonae [FOJD]
658405
658478
+
Trp
CCA
[ENA]
¡û
>W1710588531
FQZK01000020
Actinomycetota
Nocardiopsis flavescens [FQZK]
26609
26682
+
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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