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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.270998 (107 seq.)
>W1710878855
LMRH01000002
Actinomycetota
Sanguibacter sp. Leaf3 [LMRH]
365524
365600
+
Val
TAC
[ENA]
¡û
>W1711116405
LUAZ01000025
Actinomycetota
Cellulosimicrobium sp. I38E [LUAZ]
9012
9088
+
Val
TAC
[ENA]
¡û
>C171113702
CP020857
Actinomycetota
Cellulosimicrobium sp. TH-20 [CP020857]
2494786
2494862
+
Val
TAC
-
¡û
>W131242689
CAOI01000063
Actinomycetota
Cellulosimicrobium cellulans LMG 16121 [CAOI]
4133
4057
-
Val
TAC
[ENA]
¡û
>WENV180101123
OAOU01000935
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
1641
1716
+
Val
TAC
[ENA]
¡û
>WENV180113710
OAPR01011571
[OAPR] marine metagenome; seawater
512
586
+
Val
TAC
[ENA]
¡û
>WENV180114598
OAPS01022607
[OAPS] marine metagenome; sea water
710
634
-
Val
TAC
[ENA]
¡û
>WENV180280327
OBHY01000006
[OBHY] human gut metagenome; Tissue from the tricuspid valve
86726
86651
-
Val
TAC
[ENA]
¡û
>WENV180280494
OBHZ01000010
[OBHZ] human gut metagenome; Vulva exsudate
86726
86651
-
Val
TAC
[ENA]
¡û
>WENV180289213
OBIR01000009
[OBIR] human gut metagenome; Skin biopsy
86726
86651
-
Val
TAC
[ENA]
¡û
>WENV180305062
OBJK01000006
[OBJK] human gut metagenome; Skin biopsy
86726
86651
-
Val
TAC
[ENA]
¡û
>WENV180305219
OBJL01000010
[OBJL] human gut metagenome; Skin biopsy
86726
86651
-
Val
TAC
[ENA]
¡û
>WENV180358404
OBNP01051457
[OBNP] marine metagenome; seawater
175
250
+
Val
TAC
[ENA]
¡û
>WENV180359647
OBNS01009375
[OBNS] marine metagenome; Seawater
276
200
-
Val
TAC
[ENA]
¡û
>WENV180368230
OBOF01041527
[OBOF] marine metagenome; ENVO:00002010
326
402
+
Val
TAC
[ENA]
¡û
>WENV180391861
OBPN01069807
[OBPN] marine metagenome; seawater
158
82
-
Val
TAC
[ENA]
¡û
>WENV180395066
OBPT01001080
[OBPT] marine metagenome; ENVO:00002010 seawater
6831
6907
+
Val
TAC
[ENA]
¡û
>WENV180585560
OCOL01023738
[OCOL] marine metagenome; ENVO:00002010
204
280
+
Val
TAC
[ENA]
¡û
>WENV182544234
OJBF01000016
[OJBF] seawater metagenome; Sea water
10694
10768
+
Val
TAC
[ENA]
¡û
>WENV182545770
OJBN01023108
[OJBN] seawater metagenome; Sea water
247
321
+
Val
TAC
[ENA]
¡û
>WENV182548536
OJBW01001606
[OJBW] seawater metagenome; Sea water
948
874
-
Val
TAC
[ENA]
¡û
>WENV182550245
OJBZ01018945
[OJBZ] seawater metagenome; Sea water
243
169
-
Val
TAC
[ENA]
¡û
>WENV182553238
OJCR01000736
[OJCR] seawater metagenome; Sea water
2742
2816
+
Val
TAC
[ENA]
¡û
>WENV182561583
OJDX01000012
[OJDX] seawater metagenome; Sea water
25605
25531
-
Val
TAC
[ENA]
¡û
>WENV182561917
OJDY01000010
[OJDY] seawater metagenome; Sea water
12775
12849
+
Val
TAC
[ENA]
¡û
>WENV182562658
OJEA01000015
[OJEA] seawater metagenome; Sea water
18660
18734
+
Val
TAC
[ENA]
¡û
>WENV182563034
OJEB01000005
[OJEB] seawater metagenome; Sea water
31196
31270
+
Val
TAC
[ENA]
¡û
>WENV182568992
OJEY01000005
[OJEY] seawater metagenome; Sea water
46258
46184
-
Val
TAC
[ENA]
¡û
>WENV182573685
OJFP01012815
[OJFP] seawater metagenome; Sea water
1043
1117
+
Val
TAC
[ENA]
¡û
>WENV182574628
OJFS01000172
[OJFS] seawater metagenome; Sea water
19291
19365
+
Val
TAC
[ENA]
¡û
>WENV182582376
OJHB01000006
[OJHB] seawater metagenome; Sea water
12994
13068
+
Val
TAC
[ENA]
¡û
>WENV182583323
OJHD01003995
[OJHD] seawater metagenome; Sea water
1256
1330
+
Val
TAC
[ENA]
¡û
>WENV182587535
OJHN01000007
[OJHN] seawater metagenome; Sea water
13279
13353
+
Val
TAC
[ENA]
¡û
>WENV183053669
OLGP01000759
[OLGP] seawater metagenome; Sea water
852
778
-
Val
TAC
[ENA]
¡û
>WENV183054498
OLGU01000002
[OLGU] seawater metagenome; Sea water
25777
25703
-
Val
TAC
[ENA]
¡û
>WENV183055089
OLGW01005947
[OLGW] seawater metagenome; Sea water
162
88
-
Val
TAC
[ENA]
¡û
>WENV183059070
OLHS01002698
[OLHS] seawater metagenome; Sea water
592
666
+
Val
TAC
[ENA]
¡û
>WENV183059211
OLHU01000012
[OLHU] seawater metagenome; Sea water
19993
20067
+
Val
TAC
[ENA]
¡û
>WENV183060192
OLHX01000051
[OLHX] seawater metagenome; Sea water
19326
19400
+
Val
TAC
[ENA]
¡û
>WENV183635032
OOIR01000012
[OOIR] human gut metagenome; Skin biopsy
86798
86723
-
Val
TAC
[ENA]
¡û
>WENV183636120
OOJR01000005
[OOJR] human gut metagenome; Lung tissue
86798
86723
-
Val
TAC
[ENA]
¡û
>WENV183636227
OOKD01000004
[OOKD] human gut metagenome; Skin biopsy
288912
288987
+
Val
TAC
[ENA]
¡û
>WENV183636585
OOKJ01000010
[OOKJ] human gut metagenome; Material from the bottom lip
4225
4150
-
Val
TAC
[ENA]
¡û
>WENV183637095
OPGP01000005
[OPGP] human gut metagenome; Material from the ethmoid
86798
86723
-
Val
TAC
[ENA]
¡û
>ENV08000732
ABMI01029480
saltern metagenome; microbial fraction from low salinity saltern in San Diego, CA
77
1
-
Val
TAC
[ENA]
¡û
>WENV170133470
CENU01028571
[CENU] marine metagenome genome assembly TARA_025_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
106
182
+
Val
TAC
[ENA]
¡û
>WENV170568647
FLMP01059614
[FLMP] seawater metagenome; seawater
299
375
+
Val
TAC
[ENA]
¡û
>WENV170570759
FLOH01000020
[FLOH] marine metagenome; water
34178
34102
-
Val
TAC
[ENA]
¡û
>WENV170572776
FLOH01001291
[FLOH] marine metagenome; water
25604
25528
-
Val
TAC
[ENA]
¡û
>WENV170862463
MDTB01078032
[MDTB] marine metagenome; seawater
1504
1428
-
Val
TAC
[ENA]
¡û
>WENV170930390
MDTG01167075
[MDTG] marine metagenome; seawater
1764
1838
+
Val
TAC
[ENA]
¡û
>WENV170952461
MEHZ011598777
[MEHZ] marine metagenome; marine surface water
18813
18889
+
Val
TAC
[ENA]
¡û
>C191127974
CP034593
Actinomycetota
Flaviflexus ciconiae H23T48 [CP034593]
430249
430325
+
Val
TAC
-
¡û
>W141731281
JNIY01000006
Actinomycetota
Paraoerskovia marina DSM 21750 [JNIY]
157990
157914
-
Val
TAC
[ENA]
¡û
>W1911502857
OEQC01000001
Actinomycetota
Sanguibacter massiliensis Marseille-P3815 [OEQC]
475893
475968
+
Val
TAC
[ENA]
¡û
>SRA1000759
SRR001046.283452
Solar Salterns, microbial fraction from low salinity saltern in San Diego, CA (SRP000138)
77
1
-
Val
TAC
[SRA]
>W1810058214
PDJH01000001
Actinomycetota
Flavimobilis soli DSM 21574 [PDJH]
90234
90309
+
Val
TAC
[ENA]
¡û
>W1810090078
PGFE01000002
Actinomycetota
Sediminihabitans luteus DSM 25478 [PGFE]
281617
281693
+
Val
TAC
[ENA]
¡û
>W1810702200
QMGF01000009
Actinomycetota
Cellulomonas sp. K39 [QMGF]
5710
5786
+
Val
TAC
[ENA]
¡û
>SRA1032382
SRR035087.618771
454 Sequencing (SRP001808)
216
292
+
Val
TAC
[SRA]
>W2011161254
OEQC01000001
Actinomycetota
Sanguibacter massiliensis Marseille-P3815 [OEQC]
475893
475968
+
Val
TAC
[ENA]
¡û
>W2011476415
RQIK01000005
Actinomycetota
Cellulosimicrobium cellulans ATCC 21606 [RQIK]
289198
289273
+
Val
TAC
[ENA]
¡û
>SRA1045643
SRR035093.140432
454 Sequencing (SRP001814)
492
416
-
Val
TAC
[SRA]
>SRA1045855
SRR035093.181792
454 Sequencing (SRP001814)
194
270
+
Val
TAC
[SRA]
>SRA1046604
SRR035093.341423
454 Sequencing (SRP001814)
198
274
+
Val
TAC
[SRA]
>W2011600115
SIRP01000001
Actinomycetota
Isoptericola sp. BMS4 [SIRP]
2922562
2922486
-
Val
TAC
[ENA]
¡û
>SRA1046896
SRR035093.412077
454 Sequencing (SRP001814)
80
156
+
Val
TAC
[SRA]
>SRA1047161
SRR035093.472536
454 Sequencing (SRP001814)
409
483
+
Val
TAC
[SRA]
>W2011666747
SOZH01000006
Actinomycetota
Cellulosimicrobium funkei JCM 14302 [SOZH]
288750
288825
+
Val
TAC
[ENA]
¡û
>SRA1047436
SRR035093.539755
454 Sequencing (SRP001814)
134
58
-
Val
TAC
[SRA]
>W2011996052
VEBQ01000004
Actinomycetota
Cellulosimicrobium sp. TH-20 DE0282 [VEBQ]
87179
87104
-
Val
TAC
[ENA]
¡û
>W2011997914
VEDT01000003
Actinomycetota
Cellulosimicrobium sp. TH-20 DE0194 [VEDT]
276754
276830
+
Val
TAC
[ENA]
¡û
>SRA1051913
SRR035098.101746
454 Sequencing (SRP001819)
208
134
-
Val
TAC
[SRA]
>SRA1052102
SRR035098.141339
454 Sequencing (SRP001819)
302
226
-
Val
TAC
[SRA]
>SRA1052124
SRR035098.145876
454 Sequencing (SRP001819)
377
303
-
Val
TAC
[SRA]
>SRA1052358
SRR035098.187114
454 Sequencing (SRP001819)
291
217
-
Val
TAC
[SRA]
>SRA1052364
SRR035098.189671
454 Sequencing (SRP001819)
498
424
-
Val
TAC
[SRA]
>SRA1052687
SRR035098.253750
454 Sequencing (SRP001819)
292
218
-
Val
TAC
[SRA]
>SRA1052837
SRR035098.283311
454 Sequencing (SRP001819)
100
24
-
Val
TAC
[SRA]
>SRA1053077
SRR035098.331838
454 Sequencing (SRP001819)
153
229
+
Val
TAC
[SRA]
>SRA1053332
SRR035098.383870
454 Sequencing (SRP001819)
376
300
-
Val
TAC
[SRA]
>SRA1053674
SRR035098.463909
454 Sequencing (SRP001819)
100
24
-
Val
TAC
[SRA]
>W2110051824
BNAN01000002
Actinomycetota
Flavimobilis marinus CGMCC 1.3457 [BNAN]
274620
274694
+
Val
TAC
[ENA]
¡û
>W2110062701
BOOX01000002
Actinomycetota
Sediminihabitans luteus NBRC 108568 [BOOX]
170397
170321
-
Val
TAC
[ENA]
¡û
>W2110144582
JAAMSN010000071
Actinomycetota
Cellulosimicrobium cellulans 1B1-1 [JAAMSN]
18443
18518
+
Val
TAC
[ENA]
¡û
>W2110286949
JACYFD010000006
Actinomycetota
Cellulosimicrobium terreum KCTC 19206 [JACYFD]
303382
303458
+
Val
TAC
[ENA]
¡û
>W2110459032
JAFBCN010000001
Actinomycetota
Cellulosimicrobium cellulans DSM 20106 [JAFBCN]
3306533
3306457
-
Val
TAC
[ENA]
¡û
>C201161081
CP045529
Actinomycetota
Luteimicrobium xylanilyticum HY-24 [CP045529]
2380818
2380743
-
Val
TAC
-
¡û
>C201262635
CP053419
Actinomycetota
Cellulosimicrobium sp. 72-3 [CP053419]
2582014
2581938
-
Val
TAC
-
¡û
>C211030672
CP017660
Actinomycetota
Cellulosimicrobium sp. JZ28 [CP017660]
2236308
2236233
-
Val
TAC
-
¡û
>C211307454
CP072387
Actinomycetota
Cellulosimicrobium cellulans ORNL-0100 [CP072387]
898227
898302
+
Val
TAC
-
¡û
>C241011823
AP027729
Actinomycetota
Paraoerskovia sediminicola NBRC 108565 [AP027729]
2693015
2693090
+
Val
TAC
-
¡û
>C241103556
CP045920
Actinomycetota
Pseudactinotalea sp. HY158 [CP045920]
1861496
1861422
-
Val
TAC
-
¡û
>W2130010525
JAAMSM010000246
Actinomycetota
Cellulosimicrobium cellulans 1C2-5 [JAAMSM]
900
825
-
Val
TAC
[ENA]
¡û
>C241178669
CP059676
Actinomycetota
Flaviflexus equikiangi dk850 [CP059676]
844463
844539
+
Val
TAC
-
¡û
>C11111585
CP002810
Actinomycetota
Isoptericola variabilis 225 [CP002810]
2059218
2059142
-
Val
TAC
[Ensembl]
¡û
>W1511219774
JNBQ01000057
Actinomycetota
Cellulosimicrobium funkei U11 [JNBQ]
12719
12795
+
Val
TAC
[ENA]
¡û
>W1610021821
ATNL01000012
Actinomycetota
Cellulosimicrobium cellulans F16 [ATNL]
12292
12368
+
Val
TAC
[ENA]
¡û
>W1610048725
BBEI01000019
Actinomycetota
Cellulomonas sp. JCM 9808 [BBEI]
2797
2721
-
Val
TAC
[ENA]
¡û
>W1610069366
BCSK01000042
Actinomycetota
Cellulosimicrobium funkei NBRC 104118 [BCSK]
55375
55299
-
Val
TAC
[ENA]
¡û
>W121126208
BAGU01000434
Actinomycetota
Promicromonosporaceae bacterium W15 [BAGU]
1290
1366
+
Val
TAC
[ENA]
¡û
>W1610741201
LMRH01000002
Actinomycetota
Sanguibacter sp. Leaf3 [LMRH]
365524
365600
+
Val
TAC
[ENA]
¡û
>W1610927647
LUAZ01000025
Actinomycetota
Cellulosimicrobium sp. I38E [LUAZ]
9012
9088
+
Val
TAC
[ENA]
¡û
>W1710018516
ATNL01000012
Actinomycetota
Cellulosimicrobium cellulans F16 [ATNL]
12292
12368
+
Val
TAC
[ENA]
¡û
>W1710045197
BBEI01000019
Actinomycetota
Cellulomonas sp. JCM 9808 [BBEI]
2797
2721
-
Val
TAC
[ENA]
¡û
>W1710066739
BCSK01000042
Actinomycetota
Cellulosimicrobium funkei NBRC 104118 [BCSK]
55375
55299
-
Val
TAC
[ENA]
¡û
>W1710561225
FONZ01000002
Actinomycetota
Flavimobilis marinus [FONZ]
521880
521806
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK