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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.271518 (54 seq.)
>C025636
AE000512
Thermotogota
Thermotoga maritima MSB8 [AE000512]
348405
348481
+
Thr
GGT
-
¡û
>C025805
CP000702
Thermotogota
Thermotoga petrophila RKU-1 [CP000702]
589322
589246
-
Thr
GGT
[Ensembl]
¡û
>W141070768
ASGQ01000004
Thermotogota
Thermotoga neapolitana LA10 [ASGQ]
60470
60394
-
Thr
GGT
[ENA]
¡û
>W141082671
AUNF01000055
Thermotogota
Thermotoga sp. A7A [AUNF]
46989
47065
+
Thr
GGT
[ENA]
¡û
>C08011011
CP000812
Thermotogota
Pseudothermotoga lettingae TMO [CP000812]
1933193
1933269
+
Thr
GGT
[Ensembl]
¡û
>C08010916
CP000969
Thermotogota
Thermotoga sp. RQ2 [CP000969]
611904
611831
-
Thr
GGT
[Ensembl]
¡û
>WENV170675700
LDZQ01000368
[LDZQ] terrestrial metagenome; oil reservoir sample I2
142303
142379
+
Thr
GGT
[ENA]
¢þ
>WENV170676047
LDZR01000633
[LDZR] terrestrial metagenome; oil reservoir sample K2
22011
21935
-
Thr
GGT
[ENA]
¢þ
>WENV170676160
LDZR01001274
[LDZR] terrestrial metagenome; oil reservoir sample K2
6854
6778
-
Thr
GGT
[ENA]
¢þ
>WENV170676430
LDZR01002677
[LDZR] terrestrial metagenome; oil reservoir sample K2
153180
153256
+
Thr
GGT
[ENA]
¢þ
>WENV170676760
LDZS01002164
[LDZS] terrestrial metagenome; oil reservoir sample K3
4436
4360
-
Thr
GGT
[ENA]
¢þ
>W09106552
AAWB01000007
Thermotogota
Thermotoga petrophila RKU-1 [AAWB]
39792
39716
-
Thr
GGT
[ENA]
¡û
>W09107441
ABIJ01000012
Thermotogota
Thermotoga sp. RQ2 [ABIJ]
42513
42437
-
Thr
GGT
[ENA]
¡û
>W09112236
ABXR01000028
Thermotogota
Marinitoga piezophila KA3 [ABXR]
47741
47665
-
Thr
GGT
[ENA]
¡û
>W141561624
JHYP01000001
Thermotogota
Pseudothermotoga elfii DSM 9442 [JHYP]
395630
395554
-
Thr
GGT
[ENA]
¡û
>W141778858
JONI01000005
Thermotogota
Pseudothermotoga hypogea DSM 11164 [JONI]
167500
167424
-
Thr
GGT
[ENA]
¡û
>C141000347
AP014507
Thermotogota
Pseudothermotoga elfii DSM 9442 = NBRC 107921 [AP014507]
1968344
1968420
+
Thr
GGT
-
¡û
>C141000372
AP014508
Thermotogota
Pseudothermotoga hypogea DSM 11164 = NBRC 106472 [AP014508]
1430708
1430784
+
Thr
GGT
-
¡û
>C141011547
CP007013
Thermotogota
Thermotoga maritima MSB8 [CP007013]
597213
597137
-
Thr
GGT
-
¡û
>W1910635442
LNDD01000001
Thermotogota
Thermotoga sp. SG1 [LNDD]
104775
104699
-
Thr
GGT
[ENA]
¡û
>W1910635500
LNDE01000002
Thermotogota
Thermotoga sp. KOL6 [LNDE]
122644
122720
+
Thr
GGT
[ENA]
¡û
>C09110668
CP000916
Thermotogota
Thermotoga neapolitana DSM 4359 [CP000916]
332338
332262
-
Thr
GGT
[Ensembl]
¡û
>C151001651
AP014509
Thermotogota
Thermotoga caldifontis AZM44c09 [AP014509]
1629042
1628966
-
Thr
GGT
-
¡û
>C151004292
CP003408
Thermotogota
Thermotoga sp. 2812B [CP003408]
622497
622421
-
Thr
GGT
[Ensembl]
¡û
>C151004338
CP003409
Thermotogota
Thermotoga sp. Cell2 [CP003409]
587785
587709
-
Thr
GGT
[Ensembl]
¡û
>C151030652
CP007633
Thermotogota
Thermotoga sp. RQ7 [CP007633]
614137
614061
-
Thr
GGT
[Ensembl]
¡û
>C151074596
CP010967
Thermotogota
Thermotoga maritima Tma200 [CP010967]
348409
348485
+
Thr
GGT
[Ensembl]
¡û
>C151076950
CP011107
Thermotogota
Thermotoga maritima MSB8 [CP011107]
348409
348485
+
Thr
GGT
[Ensembl]
¡û
>C151076996
CP011108
Thermotogota
Thermotoga maritima Tma100 [CP011108]
348409
348485
+
Thr
GGT
[Ensembl]
¡û
>W10105856
ACXW01000010
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
50914
50990
+
Thr
GGT
[ENA]
¡û
>C10113491
CP001839
Thermotogota
Thermotoga petrophila RKU-10 [CP001839]
1005078
1005154
+
Thr
GGT
[Ensembl]
¡û
>W11108176
ACXW01000010
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
50914
50990
+
Thr
GGT
[ENA]
¡û
>W11180817
AGIJ01000003
Thermotogota
Thermotoga maritima MSB8 [AGIJ]
345226
345302
+
Thr
GGT
[ENA]
¡û
>C161005111
CP007141
Thermotogota
Pseudothermotoga hypogea DSM 11164 = NBRC 106472 [CP007141]
362867
362791
-
Thr
GGT
[Ensembl]
¡û
>W121062186
AJII01000007
Thermotogota
Thermotoga sp. EMP [AJII]
50286
50210
-
Thr
GGT
[ENA]
¡û
>C131012486
CP004077
Thermotogota
Thermotoga maritima MSB8 [CP004077]
348409
348485
+
Thr
GGT
-
¡û
>W1610540362
JSFG01000015
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
32110
32034
-
Thr
GGT
[ENA]
¡û
>W1610540364
JSFH01000002
Thermotogota
Thermotoga sp. Mc24 [JSFH]
99648
99572
-
Thr
GGT
[ENA]
¡û
>W1610540454
JSFI01000014
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
20383
20307
-
Thr
GGT
[ENA]
¡û
>W1610540466
JSFJ01000009
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
223524
223600
+
Thr
GGT
[ENA]
¡û
>W1610612502
LGEV01000001
Thermotogota
Thermotoga sp. 50_64 [LGEV]
142303
142379
+
Thr
GGT
[ENA]
¡û
>W1610612867
LGFF01000012
Thermotogota
Pseudothermotoga lettingae [LGFF]
22011
21935
-
Thr
GGT
[ENA]
¡û
>W1610612906
LGFG01000026
Thermotogota
Thermotoga petrophila naphthophila [LGFG]
6854
6778
-
Thr
GGT
[ENA]
¡û
>W1610612935
LGFH01000001
Thermotogota
Thermotoga sp. 50_1627 [LGFH]
153180
153256
+
Thr
GGT
[ENA]
¡û
>W1610613150
LGFM01000033
Thermotogota
Thermotoga sp. 47_83 [LGFM]
4436
4360
-
Thr
GGT
[ENA]
¡û
>W1710643383
JSFG01000015
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
32110
32034
-
Thr
GGT
[ENA]
¡û
>W1710643385
JSFH01000002
Thermotogota
Thermotoga sp. Mc24 [JSFH]
99648
99572
-
Thr
GGT
[ENA]
¡û
>W1710643475
JSFI01000014
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
20383
20307
-
Thr
GGT
[ENA]
¡û
>W1710643487
JSFJ01000009
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
223524
223600
+
Thr
GGT
[ENA]
¡û
>W1710733900
LGEV01000001
Thermotogota
Thermotoga sp. 50_64 [LGEV]
142303
142379
+
Thr
GGT
[ENA]
¡û
>W1710734149
LGFF01000012
Thermotogota
Pseudothermotoga lettingae [LGFF]
22011
21935
-
Thr
GGT
[ENA]
¡û
>W1710734188
LGFG01000026
Thermotogota
Thermotoga petrophila naphthophila [LGFG]
6854
6778
-
Thr
GGT
[ENA]
¡û
>W1710734217
LGFH01000001
Thermotogota
Thermotoga sp. 50_1627 [LGFH]
153180
153256
+
Thr
GGT
[ENA]
¡û
>W1710734357
LGFM01000033
Thermotogota
Thermotoga sp. 47_83 [LGFM]
4436
4360
-
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK