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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.271524 (17 seq.)
>C08011010
CP000812
Thermotogota
Pseudothermotoga lettingae TMO [CP000812]
1883783
1883859
+
Arg
GCG
[Ensembl]
¡û
>WENV170675728
LDZQ01000383
[LDZQ] terrestrial metagenome; oil reservoir sample I2
41719
41643
-
Arg
GCG
[ENA]
¢þ
>WENV170676063
LDZR01000667
[LDZR] terrestrial metagenome; oil reservoir sample K2
12920
12844
-
Arg
GCG
[ENA]
¢þ
>WENV170676451
LDZR01002692
[LDZR] terrestrial metagenome; oil reservoir sample K2
2326
2402
+
Arg
GCG
[ENA]
¢þ
>W141561623
JHYP01000001
Thermotogota
Pseudothermotoga elfii DSM 9442 [JHYP]
445053
444977
-
Arg
GCG
[ENA]
¡û
>W141778865
JONI01000006
Thermotogota
Pseudothermotoga hypogea DSM 11164 [JONI]
207975
208051
+
Arg
GCG
[ENA]
¡û
>C141000346
AP014507
Thermotogota
Pseudothermotoga elfii DSM 9442 = NBRC 107921 [AP014507]
1918921
1918997
+
Arg
GCG
-
¡û
>C141000406
AP014508
Thermotogota
Pseudothermotoga hypogea DSM 11164 = NBRC 106472 [AP014508]
596502
596426
-
Arg
GCG
-
¡û
>C151001629
AP014509
Thermotogota
Thermotoga caldifontis AZM44c09 [AP014509]
69508
69584
+
Arg
GCG
-
¡û
>C151001709
AP014510
Thermotogota
Thermotoga profunda AZM34c06 [AP014510]
1232156
1232080
-
Arg
GCG
-
¡û
>C161005104
CP007141
Thermotogota
Pseudothermotoga hypogea DSM 11164 = NBRC 106472 [CP007141]
1390555
1390479
-
Arg
GCG
[Ensembl]
¡û
>W1610612530
LGEV01000016
Thermotogota
Thermotoga sp. 50_64 [LGEV]
41719
41643
-
Arg
GCG
[ENA]
¡û
>W1610612883
LGFF01000046
Thermotogota
Pseudothermotoga lettingae [LGFF]
12920
12844
-
Arg
GCG
[ENA]
¡û
>W1610612956
LGFH01000016
Thermotogota
Thermotoga sp. 50_1627 [LGFH]
2326
2402
+
Arg
GCG
[ENA]
¡û
>W1710733928
LGEV01000016
Thermotogota
Thermotoga sp. 50_64 [LGEV]
41719
41643
-
Arg
GCG
[ENA]
¡û
>W1710734165
LGFF01000046
Thermotogota
Pseudothermotoga lettingae [LGFF]
12920
12844
-
Arg
GCG
[ENA]
¡û
>W1710734238
LGFH01000016
Thermotogota
Thermotoga sp. 50_1627 [LGFH]
2326
2402
+
Arg
GCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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