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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.272272 (18 seq.)
>W1711127863
LURA01000093
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S22_B5 [LURA]
17550
17625
+
Val
TAC
[ENA]
¡û
>W1711353117
MDDS01000009
Alphaproteobacteria
Sphingomonas turrisvirgatae MCT13 [MDDS]
12121
12046
-
Val
TAC
[ENA]
¡û
>C019746
CP000356
Alphaproteobacteria
Sphingopyxis alaskensis RB2256 [CP000356]
2205943
2205868
-
Val
TAC
[Ensembl]
¡û
>w027549
ABCG01000004
Alphaproteobacteria
Erythrobacter sp. SD-21 [ABCG]
113891
113819
-
Val
TAC
[ENA]
¡û
>WENV180040653
LLBZ010004597
[LLBZ] soil metagenome; soil from tomato rhizosphere
13930
14005
+
Val
TAC
[ENA]
¡û
>WENV170139942
CENX01043572
[CENX] marine metagenome genome assembly TARA_018_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
331
406
+
Val
TAC
[ENA]
¡û
>WENV170743523
LULW01000337
[LULW] marine metagenome; Red Sea water column Station 108 - depth 10m
17550
17625
+
Val
TAC
[ENA]
¡û
>W09102952
AAIP01000006
Alphaproteobacteria
Sphingopyxis alaskensis RB2256 [AAIP]
89665
89590
-
Val
TAC
[ENA]
¡û
>WENV170872027
MDTB01213353
[MDTB] marine metagenome; seawater
2621
2696
+
Val
TAC
[ENA]
¡û
>W2011530261
SBFF01000001
Alphaproteobacteria
Sphingosinicella sp. CPCC 101087 [SBFF]
507549
507624
+
Val
TAC
[ENA]
¡û
>C231287079
CP090953
Alphaproteobacteria
Sphingomonas sp. S2-65 [CP090953]
2663479
2663554
+
Val
TAC
-
¡û
>C231332106
CP093335
Alphaproteobacteria
Sphingopyxis granuli A2-E30 [CP093335]
3593258
3593183
-
Val
TAC
-
¡û
>C231375836
CP096971
Alphaproteobacteria
Sphingomonas sp. SUN019 [CP096971]
1484109
1484034
-
Val
TAC
-
¡û
>C231401126
CP098401
Alphaproteobacteria
Sphingomonas sp. RMG20 [CP098401]
2334804
2334879
+
Val
TAC
-
¡û
>C231452786
CP102384
Alphaproteobacteria
Sphingopyxis sp. DBS4 [CP102384]
3126269
3126194
-
Val
TAC
-
¡û
>C231508249
CP107048
Alphaproteobacteria
Qipengyuania sp. SS22 [CP107048]
319282
319207
-
Val
TAC
-
¡û
>C241059024
CP041659
Alphaproteobacteria
Sphingomonas xanthus AE3 [CP041659]
1791193
1791118
-
Val
TAC
-
¡û
>W1610938977
LURA01000093
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S22_B5 [LURA]
17550
17625
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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