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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.272478 (35 seq.)
>W1711385050
MEDR01000031
Bacteroidota
Chryseobacterium sp. SCN 40-13 [MEDR]
42544
42467
-
Pro
TGG
[ENA]
¡û
>W1711487691
MKGI01000005
Bacteroidota
Cloacibacterium normanense [MKGI]
188183
188260
+
Pro
TGG
[ENA]
¡û
>W141007786
AGYA01000017
Bacteroidota
Bergeyella zoohelcum ATCC 43767 [AGYA]
55207
55130
-
Pro
TGG
[ENA]
¡û
>W141007840
AGYB01000028
Bacteroidota
Bergeyella zoohelcum CCUG 30536 [AGYB]
59848
59925
+
Pro
TGG
[ENA]
¡û
>WENV180283887
OBID01005465
[OBID] metagenome; sludge
3363
3438
+
Pro
TGG
[ENA]
¡û
>WENV181167906
OEIU01102116
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
555
630
+
Pro
TGG
[ENA]
¡û
>WENV170010722
APMI01026177
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1372
1449
+
Pro
TGG
[ENA]
¡û
>WENV170011525
APMI01072182
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1998
1921
-
Pro
TGG
[ENA]
¡û
>WENV170654650
JRYL01003141
[JRYL] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater from different
4546
4621
+
Pro
TGG
[ENA]
¡û
>WENV170658351
JTFP01092050
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
532
609
+
Pro
TGG
[ENA]
¡û
>WENV170996161
MWWF01164144
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
451
374
-
Pro
TGG
[ENA]
¡û
>C181225809
LT906465
Bacteroidota
Chryseobacterium taklimakanense NCTC13490 [LT906465]
2592526
2592451
-
Pro
TGG
-
¡û
>C191120391
CP034157
Bacteroidota
Cloacibacterium normanense NRS-1 [CP034157]
1469026
1469101
+
Pro
TGG
-
¡û
>C191120899
CP034171
Bacteroidota
Chryseobacterium taklimakanense H4753 [CP034171]
1795507
1795582
+
Pro
TGG
-
¡û
>C191120954
CP034173
Bacteroidota
Chryseobacterium taklimakanense F9257 [CP034173]
1003174
1003099
-
Pro
TGG
-
¡û
>W1911788801
QYCZ01000001
Bacteroidota
Bergeyella cardium 1 [QYCZ]
1566576
1566501
-
Pro
TGG
[ENA]
¡û
>W1810076231
PEIH01000005
Bacteroidota
Bacteroidetes bacterium endosymbiont of Geopemphigus sp. of Geopemphigus sp. GspS2-BC2016 [PEIH]
419700
419777
+
Pro
TGG
[ENA]
¡û
>W1810758165
QPIE01000006
Bacteroidota
Chryseobacterium lacus YLOS41 [QPIE]
89979
90054
+
Pro
TGG
[ENA]
¡û
>W2010433233
JAAABJ010000043
Bacteroidota
Elizabethkingia argenteiflava YB22 [JAAABJ]
60
135
+
Pro
TGG
[ENA]
¡û
>W2011340642
QYCZ01000001
Bacteroidota
Bergeyella cardium 1 [QYCZ]
1566576
1566501
-
Pro
TGG
[ENA]
¡û
>W2011493770
RWJG01000007
Bacteroidota
Chryseobacterium sp. XH07 [RWJG]
109672
109747
+
Pro
TGG
[ENA]
¡û
>W2011493822
RWJH01000006
Bacteroidota
Chryseobacterium sp. YLOS41 [RWJH]
89979
90054
+
Pro
TGG
[ENA]
¡û
>W2011815952
UFTJ01000002
Bacteroidota
Bergeyella zoohelcum NCTC11661 [UFTJ]
132462
132387
-
Pro
TGG
[ENA]
¡û
>W2011816042
UFTL01000001
Bacteroidota
Bergeyella zoohelcum NCTC11660 [UFTL]
823185
823260
+
Pro
TGG
[ENA]
¡û
>W2011955263
UYIV01000001
Bacteroidota
Campylobacter insulaenigrae NCTC12929 [UYIV]
656555
656630
+
Pro
TGG
[ENA]
¡û
>W2110030845
BMLV01000004
Bacteroidota
Cloacibacterium rupense CGMCC 1.7656 [BMLV]
183386
183311
-
Pro
TGG
[ENA]
¡û
>W2110331142
JADKYY010000010
Bacteroidota
Chryseobacterium sp. GCR5 [JADKYY]
184
109
-
Pro
TGG
[ENA]
¡û
>C201212620
CP048222
Bacteroidota
Rhodocytophaga sp. 172606-1 [CP048222]
6167318
6167243
-
Pro
TGG
-
¡û
>C211424688
OU015319
Bacteroidota
Cloacibacterium caeni Isolate1 [OU015319]
434001
433924
-
Pro
TGG
-
¡û
>C211424850
OU015321
Bacteroidota
Cloacibacterium caeni Isolate2 [OU015321]
522115
522040
-
Pro
TGG
-
¡û
>C231499020
CP104850
Bacteroidota
Cloacibacterium sp. TD35 [CP104850]
2282428
2282503
+
Pro
TGG
-
¡û
>C241032055
CP029149
Bacteroidota
Bergeyella cardium HPQL [CP029149]
1399752
1399827
+
Pro
TGG
-
¡û
>C241221327
CP114055
Bacteroidota
Bergeyella cardium BCV [CP114055]
1399753
1399828
+
Pro
TGG
-
¡û
>W1710524989
FNJE01000002
Bacteroidota
Cloacibacterium normanense [FNJE]
568
491
-
Pro
TGG
[ENA]
¡û
>W1710606316
FWXS01000002
Bacteroidota
Moheibacter sediminis [FWXS]
440755
440678
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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