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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.272483 (123 seq.)
>W1710858994
LMBR01000091
Chlorobiota
Chlorobium limicola [LMBR]
3617
3543
-
His
GTG
[ENA]
¡û
>W1711167323
LVWG01000033
Chlorobiota
Pelodictyon luteolum [LVWG]
121397
121472
+
His
GTG
[ENA]
¡û
>W1711626066
MPJE01000011
Chlorobiota
Chlorobium sp. KB01 [MPJE]
15751
15826
+
His
GTG
[ENA]
¡û
>C171114018
CP020873
Chlorobiota
Prosthecochloris sp. HL-130-GSB [CP020873]
1507261
1507187
-
His
GTG
-
¡û
>C006585
CP000492
Chlorobiota
Chlorobium phaeobacteroides DSM 266 [CP000492]
1053357
1053430
+
His
GTG
[Ensembl]
¡û
>C007016
AE006470
Chlorobiota
Chlorobaculum tepidum TLS [AE006470]
710528
710604
+
His
GTG
[Ensembl]
¡û
>C016739
CP000096
Chlorobiota
Pelodictyon luteolum DSM 273 [CP000096]
826529
826604
+
His
GTG
[Ensembl]
¡û
>C018266
CP000607
Chlorobiota
Chlorobium phaeovibrioides [CP000607]
1256833
1256758
-
His
GTG
[Ensembl]
¡û
>w018066
AASE01000037
Chlorobiota
Chlorobium ferrooxidans DSM 13031 [AASE]
10268
10346
+
His
GTG
[ENA]
¡û
>w007157
AAIJ01000005
Chlorobiota
Prosthecochloris aestuarii DSM 271 [AAIJ]
80838
80916
+
His
GTG
[ENA]
¡û
>WENV181237135
OFFA01158124
[OFFA] coral metagenome; NA
391
316
-
His
GTG
[ENA]
¢þ
>C08003514
CP001097
Chlorobiota
Chlorobium limicola DSM 245 [CP001097]
1769758
1769684
-
His
GTG
[Ensembl]
¡û
>C08003657
CP001101
Chlorobiota
Chlorobium phaeobacteroides [CP001101]
1762669
1762595
-
His
GTG
[Ensembl]
¡û
>C08003804
CP001100
Chlorobiota
Chloroherpeton thalassium ATCC 35110 [CP001100]
1779061
1779136
+
His
GTG
[Ensembl]
¡û
>C08007158
CP001108
Chlorobiota
Prosthecochloris aestuarii DSM 271 [CP001108]
894949
895023
+
His
GTG
[Ensembl]
¡û
>WENV183513449
OMKS01005044
[OMKS] sediment metagenome; hot spring sediment
8591
8666
+
His
GTG
[ENA]
¢þ
>WENV183812109
PYLN01000053
[PYLN] freshwater metagenome; meromictic lake
5932
5857
-
His
GTG
[ENA]
¢þ
>WENV170613656
FUWD012815686
[FUWD] metagenome; unknown
5952
6027
+
His
GTG
[ENA]
¢þ
>WENV170613744
FUWD012818036
[FUWD] metagenome; unknown
2187
2262
+
His
GTG
[ENA]
¢þ
>WENV170625089
FUWD013191518
[FUWD] metagenome; unknown
10970
11044
+
His
GTG
[ENA]
¢þ
>WENV170633346
FUWD013394818
[FUWD] metagenome; unknown
10970
11044
+
His
GTG
[ENA]
¢þ
>C181068793
CP022571
Chlorobiota
Prosthecochloris sp. GSB1 TY Vent [CP022571]
1533760
1533685
-
His
GTG
-
¡û
>W09103355
AAJD01000007
Chlorobiota
Chlorobium phaeovibrioides DSM 265 [AAJD]
86964
87039
+
His
GTG
[ENA]
¡û
>W1810062192
PDNX01000007
Chlorobiota
Prosthecochloris sp. ZM [PDNX]
1637496
1637421
-
His
GTG
[ENA]
¡û
>W1810062236
PDNY01000023
Chlorobiota
Prosthecochloris sp. ZM_2 [PDNY]
5448
5372
-
His
GTG
[ENA]
¡û
>W1810062278
PDNZ01000005
Chlorobiota
Prosthecochloris marina V1 [PDNZ]
49576
49651
+
His
GTG
[ENA]
¡û
>SRA1016883
SRR035082.47164
454 Sequencing (SRP001803)
249
174
-
His
GTG
[SRA]
>SRA1018200
SRR035082.254988
454 Sequencing (SRP001803)
182
257
+
His
GTG
[SRA]
>SRA1019854
SRR035083.4731
454 Sequencing (SRP001804)
269
344
+
His
GTG
[SRA]
>SRA1019928
SRR035083.23536
454 Sequencing (SRP001804)
120
195
+
His
GTG
[SRA]
>SRA1020073
SRR035083.53112
454 Sequencing (SRP001804)
267
342
+
His
GTG
[SRA]
>SRA1020118
SRR035083.58896
454 Sequencing (SRP001804)
192
267
+
His
GTG
[SRA]
>SRA1020141
SRR035083.63323
454 Sequencing (SRP001804)
120
195
+
His
GTG
[SRA]
>SRA1020216
SRR035083.75399
454 Sequencing (SRP001804)
454
529
+
His
GTG
[SRA]
>SRA1020259
SRR035083.84605
454 Sequencing (SRP001804)
267
343
+
His
GTG
[SRA]
>SRA1020287
SRR035083.90286
454 Sequencing (SRP001804)
438
363
-
His
GTG
[SRA]
>SRA1020364
SRR035083.102093
454 Sequencing (SRP001804)
147
222
+
His
GTG
[SRA]
>SRA1020399
SRR035083.108935
454 Sequencing (SRP001804)
192
267
+
His
GTG
[SRA]
>SRA1020454
SRR035083.117915
454 Sequencing (SRP001804)
82
157
+
His
GTG
[SRA]
>SRA1020579
SRR035083.137531
454 Sequencing (SRP001804)
200
275
+
His
GTG
[SRA]
>SRA1020641
SRR035083.145475
454 Sequencing (SRP001804)
207
132
-
His
GTG
[SRA]
>SRA1020758
SRR035083.160115
454 Sequencing (SRP001804)
99
24
-
His
GTG
[SRA]
>SRA1020800
SRR035083.166747
454 Sequencing (SRP001804)
205
130
-
His
GTG
[SRA]
>SRA1020803
SRR035083.167015
454 Sequencing (SRP001804)
47
122
+
His
GTG
[SRA]
>SRA1020858
SRR035083.173811
454 Sequencing (SRP001804)
307
232
-
His
GTG
[SRA]
>SRA1020992
SRR035083.194474
454 Sequencing (SRP001804)
47
122
+
His
GTG
[SRA]
>SRA1021013
SRR035083.197782
454 Sequencing (SRP001804)
15
90
+
His
GTG
[SRA]
>SRA1021205
SRR035083.223320
454 Sequencing (SRP001804)
111
36
-
His
GTG
[SRA]
>SRA1021215
SRR035083.224815
454 Sequencing (SRP001804)
315
390
+
His
GTG
[SRA]
>SRA1021306
SRR035083.239522
454 Sequencing (SRP001804)
182
107
-
His
GTG
[SRA]
>SRA1021393
SRR035083.253950
454 Sequencing (SRP001804)
435
360
-
His
GTG
[SRA]
>SRA1021409
SRR035083.255524
454 Sequencing (SRP001804)
18
93
+
His
GTG
[SRA]
>SRA1021558
SRR035083.272783
454 Sequencing (SRP001804)
516
440
-
His
GTG
[SRA]
>SRA1021624
SRR035083.283469
454 Sequencing (SRP001804)
157
82
-
His
GTG
[SRA]
>SRA1021644
SRR035083.286424
454 Sequencing (SRP001804)
81
156
+
His
GTG
[SRA]
>SRA1021699
SRR035083.293966
454 Sequencing (SRP001804)
264
339
+
His
GTG
[SRA]
>SRA1021709
SRR035083.296280
454 Sequencing (SRP001804)
230
305
+
His
GTG
[SRA]
>SRA1021722
SRR035083.297405
454 Sequencing (SRP001804)
157
82
-
His
GTG
[SRA]
>SRA1021800
SRR035083.311692
454 Sequencing (SRP001804)
192
267
+
His
GTG
[SRA]
>SRA1021950
SRR035083.331374
454 Sequencing (SRP001804)
22
97
+
His
GTG
[SRA]
>SRA1021986
SRR035083.334749
454 Sequencing (SRP001804)
99
24
-
His
GTG
[SRA]
>SRA1022007
SRR035083.338461
454 Sequencing (SRP001804)
330
255
-
His
GTG
[SRA]
>SRA1022022
SRR035083.340067
454 Sequencing (SRP001804)
287
362
+
His
GTG
[SRA]
>SRA1022107
SRR035083.354300
454 Sequencing (SRP001804)
319
244
-
His
GTG
[SRA]
>SRA1022147
SRR035083.359528
454 Sequencing (SRP001804)
104
29
-
His
GTG
[SRA]
>SRA1022390
SRR035083.399099
454 Sequencing (SRP001804)
160
235
+
His
GTG
[SRA]
>SRA1022440
SRR035083.405859
454 Sequencing (SRP001804)
209
284
+
His
GTG
[SRA]
>SRA1022449
SRR035083.406285
454 Sequencing (SRP001804)
213
138
-
His
GTG
[SRA]
>SRA1022481
SRR035083.412057
454 Sequencing (SRP001804)
103
178
+
His
GTG
[SRA]
>SRA1022644
SRR035083.436573
454 Sequencing (SRP001804)
71
146
+
His
GTG
[SRA]
>SRA1022668
SRR035083.439576
454 Sequencing (SRP001804)
148
73
-
His
GTG
[SRA]
>SRA1022758
SRR035083.454818
454 Sequencing (SRP001804)
160
235
+
His
GTG
[SRA]
>SRA1022772
SRR035083.457094
454 Sequencing (SRP001804)
160
235
+
His
GTG
[SRA]
>SRA1022793
SRR035083.461625
454 Sequencing (SRP001804)
25
100
+
His
GTG
[SRA]
>SRA1022851
SRR035083.473239
454 Sequencing (SRP001804)
146
71
-
His
GTG
[SRA]
>SRA1022908
SRR035083.484113
454 Sequencing (SRP001804)
316
241
-
His
GTG
[SRA]
>SRA1022956
SRR035083.494433
454 Sequencing (SRP001804)
178
103
-
His
GTG
[SRA]
>SRA1023066
SRR035083.514093
454 Sequencing (SRP001804)
82
157
+
His
GTG
[SRA]
>SRA1026789
SRR035085.291861
454 Sequencing (SRP001806)
147
222
+
His
GTG
[SRA]
>SRA1029993
SRR035087.213158
454 Sequencing (SRP001808)
121
196
+
His
GTG
[SRA]
>SRA1032437
SRR035088.9911
454 Sequencing (SRP001809)
152
77
-
His
GTG
[SRA]
>SRA1032846
SRR035088.113989
454 Sequencing (SRP001809)
153
78
-
His
GTG
[SRA]
>SRA1033204
SRR035088.196259
454 Sequencing (SRP001809)
174
99
-
His
GTG
[SRA]
>SRA1033361
SRR035088.234789
454 Sequencing (SRP001809)
241
166
-
His
GTG
[SRA]
>SRA1034094
SRR035088.484115
454 Sequencing (SRP001809)
154
79
-
His
GTG
[SRA]
>SRA1035693
SRR035089.355870
454 Sequencing (SRP001810)
152
77
-
His
GTG
[SRA]
>SRA1036808
SRR035090.11667
454 Sequencing (SRP001811)
9
84
+
His
GTG
[SRA]
>SRA1036955
SRR035090.45661
454 Sequencing (SRP001811)
73
148
+
His
GTG
[SRA]
>SRA1037055
SRR035090.66735
454 Sequencing (SRP001811)
73
148
+
His
GTG
[SRA]
>SRA1037336
SRR035090.118414
454 Sequencing (SRP001811)
13
88
+
His
GTG
[SRA]
>SRA1037359
SRR035090.122194
454 Sequencing (SRP001811)
202
277
+
His
GTG
[SRA]
>SRA1037390
SRR035090.127462
454 Sequencing (SRP001811)
127
52
-
His
GTG
[SRA]
>SRA1037498
SRR035090.142953
454 Sequencing (SRP001811)
73
148
+
His
GTG
[SRA]
>SRA1037583
SRR035090.158232
454 Sequencing (SRP001811)
102
177
+
His
GTG
[SRA]
>SRA1037596
SRR035090.160410
454 Sequencing (SRP001811)
173
98
-
His
GTG
[SRA]
>SRA1037720
SRR035090.180084
454 Sequencing (SRP001811)
327
402
+
His
GTG
[SRA]
>SRA1037722
SRR035090.180577
454 Sequencing (SRP001811)
24
99
+
His
GTG
[SRA]
>SRA1037828
SRR035090.202195
454 Sequencing (SRP001811)
221
296
+
His
GTG
[SRA]
>SRA1037975
SRR035090.228087
454 Sequencing (SRP001811)
240
315
+
His
GTG
[SRA]
>SRA1038482
SRR035090.313799
454 Sequencing (SRP001811)
73
148
+
His
GTG
[SRA]
>SRA1038501
SRR035090.316210
454 Sequencing (SRP001811)
151
76
-
His
GTG
[SRA]
>SRA1038520
SRR035090.319783
454 Sequencing (SRP001811)
66
141
+
His
GTG
[SRA]
>SRA1038593
SRR035090.333096
454 Sequencing (SRP001811)
295
220
-
His
GTG
[SRA]
>SRA1038614
SRR035090.337346
454 Sequencing (SRP001811)
168
243
+
His
GTG
[SRA]
>SRA1038663
SRR035090.345926
454 Sequencing (SRP001811)
337
412
+
His
GTG
[SRA]
>SRA1038824
SRR035090.375161
454 Sequencing (SRP001811)
33
108
+
His
GTG
[SRA]
>SRA1038915
SRR035090.393340
454 Sequencing (SRP001811)
83
8
-
His
GTG
[SRA]
>SRA1039130
SRR035090.429531
454 Sequencing (SRP001811)
165
240
+
His
GTG
[SRA]
>SRA1039279
SRR035090.457197
454 Sequencing (SRP001811)
18
93
+
His
GTG
[SRA]
>SRA1039648
SRR035090.535691
454 Sequencing (SRP001811)
362
437
+
His
GTG
[SRA]
>SRA1039691
SRR035090.546114
454 Sequencing (SRP001811)
320
245
-
His
GTG
[SRA]
>SRA1039774
SRR035090.566191
454 Sequencing (SRP001811)
229
154
-
His
GTG
[SRA]
>SRA1039780
SRR035090.566882
454 Sequencing (SRP001811)
173
98
-
His
GTG
[SRA]
>SRA1042224
SRR035091.358589
454 Sequencing (SRP001812)
200
125
-
His
GTG
[SRA]
>SRA1046022
SRR035093.217743
454 Sequencing (SRP001814)
161
236
+
His
GTG
[SRA]
>SRA1046211
SRR035093.253838
454 Sequencing (SRP001814)
135
210
+
His
GTG
[SRA]
>SRA1046978
SRR035093.429532
454 Sequencing (SRP001814)
12
87
+
His
GTG
[SRA]
>SRA1053936
SRR035099.8665
454 Sequencing (SRP001820)
406
331
-
His
GTG
[SRA]
>SRA1054148
SRR035099.69952
454 Sequencing (SRP001820)
353
428
+
His
GTG
[SRA]
>SRA1054152
SRR035099.70291
454 Sequencing (SRP001820)
179
254
+
His
GTG
[SRA]
>SRA1054669
SRR035099.184825
454 Sequencing (SRP001820)
377
302
-
His
GTG
[SRA]
>W1610721340
LMBR01000091
Chlorobiota
Chlorobium limicola [LMBR]
3617
3543
-
His
GTG
[ENA]
¡û
>W1610977654
LVWG01000033
Chlorobiota
Pelodictyon luteolum [LVWG]
121397
121472
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK