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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.273236 (40 seq.)
>WENV012237
AACY020334096
Marine microbial communities from Global Ocean Sampling (GOS)
2325
2404
+
Pro
TGG
[ENA]
>WENV180045010
MOXS02070549
[MOXS] marine metagenome; 60 m water sample filtered on 0.2 um supor filter
373
298
-
Pro
TGG
[ENA]
¡û
>WENV180047273
MPLT02201763
[MPLT] marine metagenome; 70 m water sample filtered on 0.2 um supor filter
708
783
+
Pro
TGG
[ENA]
¡û
>WENV180107300
OAPF01100753
[OAPF] marine metagenome; ENVO:00002010
322
247
-
Pro
TGG
[ENA]
¡û
>WENV180589233
OCOR01013242
[OCOR] marine metagenome; ENVO:00002042
258
333
+
Pro
TGG
[ENA]
¡û
>WENV183699560
OZSS01032519
[OZSS] metagenome; Seawater sample
1282
1357
+
Pro
TGG
[ENA]
¡û
>WENV170335071
CESZ01029200
[CESZ] marine metagenome genome assembly TARA_078_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
88
163
+
Pro
TGG
[ENA]
¡û
>WENV170579244
FUFK010038411
[FUFK] metagenome; unknown
4978
4903
-
Pro
TGG
[ENA]
¡û
>WENV170582846
FUFK010114316
[FUFK] metagenome; unknown
1415
1340
-
Pro
TGG
[ENA]
¡û
>WENV170582876
FUFK010115279
[FUFK] metagenome; unknown
1771
1696
-
Pro
TGG
[ENA]
¡û
>WENV170583133
FUFK010123253
[FUFK] metagenome; unknown
2548
2623
+
Pro
TGG
[ENA]
¡û
>WENV170585207
FUFK010269837
[FUFK] metagenome; unknown
907
982
+
Pro
TGG
[ENA]
¡û
>WENV170586033
FUFK010354667
[FUFK] metagenome; unknown
288
363
+
Pro
TGG
[ENA]
¡û
>WENV170589718
FUFK010662680
[FUFK] metagenome; unknown
77
2
-
Pro
TGG
[ENA]
¡û
>WENV170591635
FUFK010784398
[FUFK] metagenome; unknown
1448
1523
+
Pro
TGG
[ENA]
¡û
>WENV170592181
FUFK010801436
[FUFK] metagenome; unknown
1865
1940
+
Pro
TGG
[ENA]
¡û
>WENV170739086
LULP01020613
[LULP] marine metagenome; Red Sea water column Station 149 - depth 25m
187
112
-
Pro
TGG
[ENA]
¡û
>WENV170751882
LUMI01014028
[LUMI] marine metagenome; Red Sea water column Station 34 - depth 10m
150
75
-
Pro
TGG
[ENA]
¡û
>WENV170755692
LUMN01012622
[LUMN] marine metagenome; Red Sea water column Station 22 - depth 25m
160
235
+
Pro
TGG
[ENA]
¡û
>WENV170770097
LXNH01086168
[LXNH] seawater metagenome; marine seawater
12
87
+
Pro
TGG
[ENA]
¡û
>WENV170823277
MDSY01054486
[MDSY] marine metagenome; seawater
3856
3781
-
Pro
TGG
[ENA]
¡û
>WENV170851465
MDTA01132589
[MDTA] marine metagenome; seawater
3958
4033
+
Pro
TGG
[ENA]
¡û
>WENV170863436
MDTB01091166
[MDTB] marine metagenome; seawater
131
56
-
Pro
TGG
[ENA]
¡û
>WENV170864027
MDTB01099583
[MDTB] marine metagenome; seawater
76
1
-
Pro
TGG
[ENA]
¡û
>WENV170871085
MDTB01201378
[MDTB] marine metagenome; seawater
104
29
-
Pro
TGG
[ENA]
¡û
>WENV170896879
MDTD01102456
[MDTD] marine metagenome; seawater
76
1
-
Pro
TGG
[ENA]
¡û
>WENV170898114
MDTD01121202
[MDTD] marine metagenome; seawater
1
76
+
Pro
TGG
[ENA]
¡û
>WENV170917730
MDTE01196700
[MDTE] marine metagenome; seawater
9238
9313
+
Pro
TGG
[ENA]
¡û
>WENV170925466
MDTG01084454
[MDTG] marine metagenome; seawater
24
101
+
Pro
TGG
[ENA]
¡û
>SRA1006417
SRR020488.80082
Microbial community gene content and expression in the Central North Pacific Gyre, Station ALOHA, HOT186 (SRP001041)
210
135
-
Pro
TGG
[SRA]
>SRA1006567
SRR020488.134068
Microbial community gene content and expression in the Central North Pacific Gyre, Station ALOHA, HOT186 (SRP001041)
160
85
-
Pro
TGG
[SRA]
>WENV028972
AACY021160138
Marine microbial communities from Global Ocean Sampling (GOS)
688
767
+
Pro
TGG
[ENA]
>WENV039025
AACY021978571
Marine microbial communities from Global Ocean Sampling (GOS)
689
768
+
Pro
TGG
[ENA]
>WENV039150
AACY021986987
Marine microbial communities from Global Ocean Sampling (GOS)
144
223
+
Pro
TGG
[ENA]
>WENV043849
AACY022363810
Marine microbial communities from Global Ocean Sampling (GOS)
692
613
-
Pro
TGG
[ENA]
>WENV048202
AACY022716812
Marine microbial communities from Global Ocean Sampling (GOS)
180
257
+
Pro
TGG
[ENA]
>WENV048290
AACY022723009
Marine microbial communities from Global Ocean Sampling (GOS)
583
504
-
Pro
TGG
[ENA]
>WENV049557
AACY022801664
Marine microbial communities from Global Ocean Sampling (GOS)
542
463
-
Pro
TGG
[ENA]
>WENV059763
AACY023374742
Marine microbial communities from Global Ocean Sampling (GOS)
751
830
+
Pro
TGG
[ENA]
>WENV063809
AACY023518599
Marine microbial communities from Global Ocean Sampling (GOS)
487
566
+
Pro
TGG
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK