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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.273391 (117 seq.)
>W1710822457
LKUW01000118
Betaproteobacteria
Paracidovorax citrulli [LKUW]
123034
123110
+
Gln
TTG
[ENA]
¡û
>W1710861466
LMDQ01000013
Betaproteobacteria
Acidovorax sp. Root402 [LMDQ]
154156
154080
-
Gln
TTG
[ENA]
¡û
>W1710865375
LMGP01000018
Betaproteobacteria
Acidovorax sp. Root568 [LMGP]
140007
139931
-
Gln
TTG
[ENA]
¡û
>W1710866652
LMHQ01000012
Betaproteobacteria
Acidovorax sp. Root70 [LMHQ]
186977
186901
-
Gln
TTG
[ENA]
¡û
>W1710867478
LMIH01000040
Betaproteobacteria
Acidovorax sp. Root217 [LMIH]
42177
42253
+
Gln
TTG
[ENA]
¡û
>W1710867546
LMIJ01000004
Betaproteobacteria
Acidovorax sp. Root219 [LMIJ]
31015
31091
+
Gln
TTG
[ENA]
¡û
>W1710868486
LMJC01000030
Betaproteobacteria
Acidovorax sp. Root267 [LMJC]
183330
183406
+
Gln
TTG
[ENA]
¡û
>W1710868718
LMJH01000010
Betaproteobacteria
Acidovorax sp. Root275 [LMJH]
187671
187747
+
Gln
TTG
[ENA]
¡û
>W1710872382
LMLY01000012
Betaproteobacteria
Acidovorax sp. Leaf76 [LMLY]
370438
370362
-
Gln
TTG
[ENA]
¡û
>W1710872424
LMLZ01000001
Betaproteobacteria
Acidovorax sp. Leaf78 [LMLZ]
100394
100318
-
Gln
TTG
[ENA]
¡û
>W1710872602
LMMC01000012
Betaproteobacteria
Acidovorax sp. Leaf84 [LMMC]
321084
321008
-
Gln
TTG
[ENA]
¡û
>W1710877004
LMPT01000012
Betaproteobacteria
Acidovorax sp. Leaf191 [LMPT]
393505
393429
-
Gln
TTG
[ENA]
¡û
>W1710892926
LNEG01000068
Betaproteobacteria
Burkholderiales bacterium Ga0074133 [LNEG]
3143
3067
-
Gln
TTG
[ENA]
¡û
>W1711073167
LSIH01000196
Betaproteobacteria
Acidovorax delafieldii [LSIH]
4277
4201
-
Gln
TTG
[ENA]
¡û
>W1711073554
LSIQ01000586
Betaproteobacteria
Comamonadaceae bacterium CCH12-A10 [LSIQ]
33193
33117
-
Gln
TTG
[ENA]
¡û
>W1711073679
LSIU01000751
Betaproteobacteria
Comamonadaceae bacterium CCH4-C5 [LSIU]
2683
2607
-
Gln
TTG
[ENA]
¡û
>W1711075842
LSKS01000665
Betaproteobacteria
Acidovorax sp. CCH12-A4 [LSKS]
48514
48438
-
Gln
TTG
[ENA]
¡û
>W1711125020
LUKZ01000029
Betaproteobacteria
Acidovorax sp. GW101-3H11 [LUKZ]
2909
2833
-
Gln
TTG
[ENA]
¡û
>W1711384819
MEDK01000087
Betaproteobacteria
Acidovorax sp. SCN 65-108 [MEDK]
42446
42522
+
Gln
TTG
[ENA]
¡û
>W1711384882
MEDM01000108
Betaproteobacteria
Acidovorax sp. SCN 65-28 [MEDM]
88
12
-
Gln
TTG
[ENA]
¡û
>W1711394780
MERR01000019
Betaproteobacteria
Burkholderiales bacterium GWA2_64_37 [MERR]
15783
15859
+
Gln
TTG
[ENA]
¡û
>W1711501314
MKRM01000041
Betaproteobacteria
Acidovorax sp. 65-7 [MKRM]
13561
13637
+
Gln
TTG
[ENA]
¡û
>W1711503003
MKTF01000039
Betaproteobacteria
Burkholderiales bacterium 64-34 [MKTF]
154788
154712
-
Gln
TTG
[ENA]
¡û
>C171049672
CP016447
Betaproteobacteria
Acidovorax sp. RAC01 [CP016447]
703301
703377
+
Gln
TTG
-
¡û
>W131045648
AMRP01000174
Betaproteobacteria
Paracidovorax citrulli ZJU1106 [AMRP]
4178
4102
-
Gln
TTG
[ENA]
¡û
>W131104535
APCR01000288
Betaproteobacteria
Comamonas sp. B-9 [APCR]
9031
8955
-
Gln
TTG
[ENA]
¡û
>C000122
CP000512
Betaproteobacteria
Paracidovorax citrulli AAC00-1 [CP000512]
3983496
3983572
+
Gln
TTG
[Ensembl]
¡û
>C026319
CP000542
Betaproteobacteria
Verminephrobacter eiseniae EF01-2 [CP000542]
1065809
1065733
-
Gln
TTG
[Ensembl]
¡û
>WENV180099677
NMRC01022488
[NMRC] plant metagenome; fluid collected inside the plant's pitcher
208
132
-
Gln
TTG
[ENA]
¢þ
>WENV180283655
OBID01001388
[OBID] metagenome; sludge
5770
5694
-
Gln
TTG
[ENA]
¢þ
>WENV181311301
OFJB01000666
[OFJB] sludge metagenome; sludge
638
562
-
Gln
TTG
[ENA]
¢þ
>WENV181385550
OFRI01122080
[OFRI] wastewater metagenome; Exp Tend VB 90WW
315
239
-
Gln
TTG
[ENA]
¢þ
>WENV181414704
OGCL01001096
[OGCL] hot springs metagenome; Hot spring water
13329
13405
+
Gln
TTG
[ENA]
¢þ
>WENV181835411
OGVI01000243
[OGVI] freshwater metagenome; freshwater
388
464
+
Gln
TTG
[ENA]
¢þ
>WENV181838437
OGVN01000261
[OGVN] freshwater metagenome; freshwater
1941
1865
-
Gln
TTG
[ENA]
¢þ
>WENV181842706
OGVT01013647
[OGVT] freshwater metagenome; freshwater
450
374
-
Gln
TTG
[ENA]
¢þ
>WENV183725696
PJQF01008509
[PJQF] biofilm metagenome; biomolecule (vanillin) treated reverse osmosis membrane biofilm
707
783
+
Gln
TTG
[ENA]
¢þ
>WENV183740833
PJUF01012431
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
619
695
+
Gln
TTG
[ENA]
¢þ
>WENV183743307
PJUJ01000391
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
21108
21032
-
Gln
TTG
[ENA]
¢þ
>WENV183743645
PJUJ01014157
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
507
583
+
Gln
TTG
[ENA]
¢þ
>WENV183744072
PJUK01000324
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
3039
3115
+
Gln
TTG
[ENA]
¢þ
>WENV183744866
PJUL01000470
[PJUL] feces metagenome; Chicken feces enriched on filter paper
107
31
-
Gln
TTG
[ENA]
¢þ
>WENV183744878
PJUL01000510
[PJUL] feces metagenome; Chicken feces enriched on filter paper
5512
5588
+
Gln
TTG
[ENA]
¢þ
>WENV183744920
PJUL01000658
[PJUL] feces metagenome; Chicken feces enriched on filter paper
19844
19920
+
Gln
TTG
[ENA]
¢þ
>WENV170710486
LNFM01001874
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
67033
66957
-
Gln
TTG
[ENA]
¢þ
>C181088955
CP023687
Betaproteobacteria
Paracidovorax citrulli KACC17005 [CP023687]
1366256
1366332
+
Gln
TTG
-
¡û
>C191063764
CP029373
Betaproteobacteria
Paracidovorax citrulli M6 [CP029373]
729743
729819
+
Gln
TTG
-
¡û
>C191099882
CP033069
Betaproteobacteria
Acidovorax sp. 1608163 [CP033069]
3508067
3508143
+
Gln
TTG
-
¡û
>W141701629
JMKU01000009
Betaproteobacteria
Paracidovorax oryzae ATCC 19882 [JMKU]
170005
169929
-
Gln
TTG
[ENA]
¡û
>W09106050
AASQ01000025
Betaproteobacteria
Verminephrobacter eiseniae EF01-2 [AASQ]
19074
19150
+
Gln
TTG
[ENA]
¡û
>W09106061
AASX01000001
Betaproteobacteria
Paracidovorax citrulli subsp. citrulli AAC00-1 [AASX]
118593
118669
+
Gln
TTG
[ENA]
¡û
>W1910179188
BJHU01000021
Betaproteobacteria
Acidovorax sp. NB1 [BJHU]
127815
127891
+
Gln
TTG
[ENA]
¡û
>W1910699761
MERV01000022
Betaproteobacteria
Burkholderiales bacterium RIFCSPHIGHO2_01_FULL_64_960 [MERV]
14057
14133
+
Gln
TTG
[ENA]
¡û
>W1910699814
MERW01000037
Betaproteobacteria
Burkholderiales bacterium RIFCSPHIGHO2_02_FULL_64_19 [MERW]
41524
41600
+
Gln
TTG
[ENA]
¡û
>W1910699972
MESB01000303
Betaproteobacteria
Burkholderiales bacterium RIFCSPHIGHO2_12_FULL_65_48 [MESB]
41847
41923
+
Gln
TTG
[ENA]
¡û
>W1910700281
MESJ01000034
Betaproteobacteria
Burkholderiales bacterium RIFCSPLOWO2_12_FULL_64_33 [MESJ]
12615
12539
-
Gln
TTG
[ENA]
¡û
>W1911114321
NOIG01000004
Betaproteobacteria
Acidovorax kalamii KNDSW-TSA6 [NOIG]
223671
223595
-
Gln
TTG
[ENA]
¡û
>W1911573294
PDEA01000001
Betaproteobacteria
Comamonas terrigena FDAARGOS_394 [PDEA]
4345686
4345610
-
Gln
TTG
[ENA]
¡û
>W1911647679
QAJR01000003
Betaproteobacteria
Acidovorax sp. FJL06 [QAJR]
132008
132084
+
Gln
TTG
[ENA]
¡û
>W1911775422
QXNC01000027
Betaproteobacteria
Simplicispira metamorpha NBRC 13960 [QXNC]
54011
53935
-
Gln
TTG
[ENA]
¡û
>W1810071482
PEET01000001
Betaproteobacteria
Acidovorax sp. 59 [PEET]
3481202
3481278
+
Gln
TTG
[ENA]
¡û
>W1810071613
PEEV01000001
Betaproteobacteria
Acidovorax sp. 56 [PEEV]
4797486
4797410
-
Gln
TTG
[ENA]
¡û
>W1810072509
PEFJ01000001
Betaproteobacteria
Acidovorax sp. 62 [PEFJ]
417414
417338
-
Gln
TTG
[ENA]
¡û
>W1810173365
PJMZ01000001
Betaproteobacteria
Acidovorax sp. 30 [PJMZ]
1472643
1472567
-
Gln
TTG
[ENA]
¡û
>W1810474437
QAIH01000225
Betaproteobacteria
Acidovorax sp. HMWF029 [QAIH]
57632
57708
+
Gln
TTG
[ENA]
¡û
>W1810474697
QAIM01000495
Betaproteobacteria
Acidovorax sp. HMWF018 [QAIM]
8764
8688
-
Gln
TTG
[ENA]
¡û
>W1810486328
QAXU01000023
Betaproteobacteria
Acidovorax sp. CF301 [QAXU]
79485
79561
+
Gln
TTG
[ENA]
¡û
>W1810513832
QBTZ01000001
Betaproteobacteria
Acidovorax sp. 107 [QBTZ]
4277427
4277351
-
Gln
TTG
[ENA]
¡û
>W1810573125
QEKN01000001
Betaproteobacteria
Paracidovorax citrulli AAC00-1 #5684 [QEKN]
963119
963195
+
Gln
TTG
[ENA]
¡û
>W1810573536
QEKU01000001
Betaproteobacteria
Acidovorax sp. 99 [QEKU]
3178052
3177976
-
Gln
TTG
[ENA]
¡û
>W1810580639
QETI01000013
Betaproteobacteria
Comamonas sp. JNW [QETI]
48592
48668
+
Gln
TTG
[ENA]
¡û
>W1810659455
QJKB01000003
Betaproteobacteria
Undibacterium pigrum DSM 19792 [QJKB]
577106
577182
+
Gln
TTG
[ENA]
¡û
>W1810677467
QKMS01000012
Betaproteobacteria
Acidovorax sp. OV235 [QKMS]
190362
190286
-
Gln
TTG
[ENA]
¡û
>W1810683039
QKVP01000002
Betaproteobacteria
Acidovorax sp. ST3 [QKVP]
753079
753155
+
Gln
TTG
[ENA]
¡û
>W1810696140
QLTA01000014
Betaproteobacteria
Paracidovorax anthurii CFPB 3232 [QLTA]
26313
26237
-
Gln
TTG
[ENA]
¡û
>W1810885164
QUNC01000001
Betaproteobacteria
Paracidovorax citrulli AAC00-1 #5596 [QUNC]
570981
570905
-
Gln
TTG
[ENA]
¡û
>SRA1016175
SRR023846.380322
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
174
98
-
Gln
TTG
[SRA]
>W10110558
ADCB01000027
Betaproteobacteria
Paracidovorax avenae subsp. avenae ATCC 19860 [ADCB]
16557
16481
-
Gln
TTG
[ENA]
¡û
>C11100148
CP002521
Betaproteobacteria
Paracidovorax avenae ATCC 19860 [CP002521]
3994261
3994337
+
Gln
TTG
[Ensembl]
¡û
>W11112995
ADCB01000027
Betaproteobacteria
Paracidovorax avenae subsp. avenae ATCC 19860 [ADCB]
16557
16481
-
Gln
TTG
[ENA]
¡û
>W1511503086
JXDJ01000026
Betaproteobacteria
Paracidovorax citrulli tw6 [JXDJ]
219607
219531
-
Gln
TTG
[ENA]
¡û
>W1511518939
JXYQ01000046
Betaproteobacteria
Acidovorax temperans KY4 [JXYQ]
18446
18522
+
Gln
TTG
[ENA]
¡û
>W1511527417
JYHM01000016
Betaproteobacteria
Paracidovorax citrulli pslbtw65 [JYHM]
142088
142012
-
Gln
TTG
[ENA]
¡û
>W11156549
AFBG01000019
Betaproteobacteria
Acidovorax radicis N35 [AFBG]
182795
182871
+
Gln
TTG
[ENA]
¡û
>W11156579
AFBH01000010
Betaproteobacteria
Acidovorax radicis N35v [AFBH]
566607
566531
-
Gln
TTG
[ENA]
¡û
>W11170768
AFPT01000100
Betaproteobacteria
Paracidovorax oryzae subsp. avenae RS-1 [AFPT]
46171
46247
+
Gln
TTG
[ENA]
¡û
>W121019083
AGTS01000078
Betaproteobacteria
Acidovorax sp. NO-1 [AGTS]
151086
151162
+
Gln
TTG
[ENA]
¡û
>W121086422
AKJX01000122
Betaproteobacteria
Acidovorax sp. CF316 [AKJX]
2098
2022
-
Gln
TTG
[ENA]
¡û
>W1610062638
BCNR01000007
Betaproteobacteria
Comamonas terrigena NBRC 13299 [BCNR]
255586
255510
-
Gln
TTG
[ENA]
¡û
>C131008698
CP003872
Betaproteobacteria
Acidovorax sp. KKS102 [CP003872]
1069121
1069045
-
Gln
TTG
[Ensembl]
¡û
>W1610623698
LHUP01000173
Betaproteobacteria
Acidovorax sp. SD340 [LHUP]
69463
69539
+
Gln
TTG
[ENA]
¡û
>W1610686322
LKUW01000118
Betaproteobacteria
Paracidovorax citrulli [LKUW]
123034
123110
+
Gln
TTG
[ENA]
¡û
>W1610723812
LMDQ01000013
Betaproteobacteria
Acidovorax sp. Root402 [LMDQ]
154156
154080
-
Gln
TTG
[ENA]
¡û
>W1610727721
LMGP01000018
Betaproteobacteria
Acidovorax sp. Root568 [LMGP]
140007
139931
-
Gln
TTG
[ENA]
¡û
>W1610728998
LMHQ01000012
Betaproteobacteria
Acidovorax sp. Root70 [LMHQ]
186977
186901
-
Gln
TTG
[ENA]
¡û
>W1610729824
LMIH01000040
Betaproteobacteria
Acidovorax sp. Root217 [LMIH]
42177
42253
+
Gln
TTG
[ENA]
¡û
>W1610729892
LMIJ01000004
Betaproteobacteria
Acidovorax sp. Root219 [LMIJ]
31015
31091
+
Gln
TTG
[ENA]
¡û
>W1610730832
LMJC01000030
Betaproteobacteria
Acidovorax sp. Root267 [LMJC]
183330
183406
+
Gln
TTG
[ENA]
¡û
>W1610731064
LMJH01000010
Betaproteobacteria
Acidovorax sp. Root275 [LMJH]
187671
187747
+
Gln
TTG
[ENA]
¡û
>W1610734728
LMLY01000012
Betaproteobacteria
Acidovorax sp. Leaf76 [LMLY]
370438
370362
-
Gln
TTG
[ENA]
¡û
>W1610734770
LMLZ01000001
Betaproteobacteria
Acidovorax sp. Leaf78 [LMLZ]
100394
100318
-
Gln
TTG
[ENA]
¡û
>W1610734948
LMMC01000012
Betaproteobacteria
Acidovorax sp. Leaf84 [LMMC]
321084
321008
-
Gln
TTG
[ENA]
¡û
>W1610739350
LMPT01000012
Betaproteobacteria
Acidovorax sp. Leaf191 [LMPT]
393505
393429
-
Gln
TTG
[ENA]
¡û
>W1610753192
LNEG01000068
Betaproteobacteria
Burkholderiales bacterium Ga0074133 [LNEG]
3143
3067
-
Gln
TTG
[ENA]
¡û
>W1610912472
LSIH01000196
Betaproteobacteria
Acidovorax delafieldii [LSIH]
4277
4201
-
Gln
TTG
[ENA]
¡û
>W1610912859
LSIQ01000586
Betaproteobacteria
Comamonadaceae bacterium CCH12-A10 [LSIQ]
33193
33117
-
Gln
TTG
[ENA]
¡û
>W1610912984
LSIU01000751
Betaproteobacteria
Comamonadaceae bacterium CCH4-C5 [LSIU]
2683
2607
-
Gln
TTG
[ENA]
¡û
>W1610915147
LSKS01000665
Betaproteobacteria
Acidovorax sp. CCH12-A4 [LSKS]
48514
48438
-
Gln
TTG
[ENA]
¡û
>W1610935953
LUKZ01000029
Betaproteobacteria
Acidovorax sp. GW101-3H11 [LUKZ]
2909
2833
-
Gln
TTG
[ENA]
¡û
>W1710060114
BCNR01000007
Betaproteobacteria
Comamonas terrigena NBRC 13299 [BCNR]
255586
255510
-
Gln
TTG
[ENA]
¡û
>W1710512054
FMZC01000003
Betaproteobacteria
Paracidovorax valerianellae [FMZC]
48839
48915
+
Gln
TTG
[ENA]
¡û
>W1710519719
FNEY01000008
Betaproteobacteria
Paracidovorax citrulli [FNEY]
52524
52448
-
Gln
TTG
[ENA]
¡û
>W1710525295
FNJL01000002
Betaproteobacteria
Paracidovorax cattleyae [FNJL]
180101
180025
-
Gln
TTG
[ENA]
¡û
>W1710551534
FOGD01000003
Betaproteobacteria
Giesbergeria anulus [FOGD]
22302
22226
-
Gln
TTG
[ENA]
¡û
>W1710559469
FOMQ01000026
Betaproteobacteria
Paracidovorax konjaci [FOMQ]
16440
16364
-
Gln
TTG
[ENA]
¡û
>W1710610196
FYEX01000001
Betaproteobacteria
Polynucleobacter victoriensis MWH-VicM1 [FYEX]
1011515
1011439
-
Gln
TTG
[ENA]
¡û
>W1710754788
LHUP01000173
Betaproteobacteria
Acidovorax sp. SD340 [LHUP]
69463
69539
+
Gln
TTG
[ENA]
¡û
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(or Accession No.)
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(Sample source for ENV)
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Direction
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Anticodon
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Decision
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Representative sequence of each cluster
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