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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.273837 (52 seq.)
>W1710802250
LJXT01000158
Bacteroidota
Algoriphagus marincola HL-49 [LJXT]
7703
7629
-
Met
CAT
[ENA]
¡û
>W1711021978
LQZQ01000045
Bacteroidota
Roseivirga ehrenbergii [LQZQ]
415571
415495
-
Met
CAT
[ENA]
¡û
>W1711027001
LRDB01000004
Bacteroidota
Roseivirga echinicomitans [LRDB]
174403
174327
-
Met
CAT
[ENA]
¡û
>W1711047550
LRPB01000034
Bacteroidota
Roseivirga seohaensis [LRPB]
72574
72650
+
Met
CAT
[ENA]
¡û
>W131211910
ATNM01000071
Bacteroidota
Cyclobacterium qasimii M12-11B [ATNM]
3618
3544
-
Met
CAT
[ENA]
¡û
>W131223081
AUBU01000001
Bacteroidota
Algoriphagus marincola DSM 16067 [AUBU]
475863
475787
-
Met
CAT
[ENA]
¡û
>W141039127
ALWO02000023
Bacteroidota
Indibacter alkaliphilus LW1 [ALWO]
47528
47454
-
Met
CAT
[ENA]
¡û
>WENV181233861
OFET01000163
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
45800
45874
+
Ile2
CAT
[ENA]
¢þ
>WENV181306879
OFIN01014290
[OFIN] marine metagenome; sea ice
166
240
+
Ile2
CAT
[ENA]
¢þ
>WENV181323908
OFKZ01029483
[OFKZ] marine metagenome; sea ice
309
235
-
Ile2
CAT
[ENA]
¢þ
>WENV182546267
OJBO01004857
[OJBO] seawater metagenome; Sea water
1903
1829
-
Ile2
CAT
[ENA]
¢þ
>WENV182573499
OJFP01002810
[OJFP] seawater metagenome; Sea water
2615
2541
-
Ile2
CAT
[ENA]
¢þ
>WENV182574150
OJFR01000173
[OJFR] seawater metagenome; Sea water
11001
11075
+
Ile2
CAT
[ENA]
¢þ
>WENV182576157
OJFX01004303
[OJFX] seawater metagenome; Sea water
2479
2553
+
Ile2
CAT
[ENA]
¢þ
>WENV182579977
OJGU01000851
[OJGU] seawater metagenome; Sea water
12913
12839
-
Ile2
CAT
[ENA]
¢þ
>WENV182581212
OJGX01000887
[OJGX] seawater metagenome; Sea water
10701
10627
-
Ile2
CAT
[ENA]
¢þ
>W141278934
JAFX01000001
Bacteroidota
Algoriphagus marincola HL-49 [JAFX]
447657
447583
-
Met
CAT
[ENA]
¡û
>WENV183062371
OLID01005335
[OLID] seawater metagenome; Sea water
1810
1884
+
Ile2
CAT
[ENA]
¢þ
>WENV183621226
OOFT01022317
[OOFT] marine metagenome; sea ice
736
662
-
Ile2
CAT
[ENA]
¢þ
>WENV183621786
OOFU01060107
[OOFU] marine metagenome; sea ice
229
155
-
Ile2
CAT
[ENA]
¢þ
>WENV183623615
OOGA01019709
[OOGA] marine metagenome; sea ice
420
494
+
Ile2
CAT
[ENA]
¢þ
>WENV183624541
OOGD01035557
[OOGD] marine metagenome; sea ice
157
83
-
Ile2
CAT
[ENA]
¢þ
>WENV183624860
OOGE01021215
[OOGE] marine metagenome; sea ice
123
49
-
Ile2
CAT
[ENA]
¢þ
>WENV183626731
OOGJ01021607
[OOGJ] marine metagenome; seawater
68
142
+
Ile2
CAT
[ENA]
¢þ
>WENV170155510
CEOG01037175
[CEOG] marine metagenome genome assembly TARA_034_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1393
1469
+
Met
CAT
[ENA]
¢þ
>WENV170296497
CESE01011543
[CESE] marine metagenome genome assembly TARA_085_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
172
96
-
Met
CAT
[ENA]
¢þ
>WENV170569007
FLMP01107149
[FLMP] seawater metagenome; seawater
113
37
-
Met
CAT
[ENA]
¢þ
>WENV170612903
FUWD012738104
[FUWD] metagenome; unknown
77
3
-
Met
CAT
[ENA]
¢þ
>WENV170783400
MAAC01016574
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
177
253
+
Met
CAT
[ENA]
¢þ
>WENV170920366
MDTF01017384
[MDTF] marine metagenome; seawater
583
507
-
Met
CAT
[ENA]
¢þ
>C181113276
CP025116
Bacteroidota
Nonlabens sp. MB-3u-79 [CP025116]
924059
924135
+
Met
CAT
-
¡û
>C191127247
CP034549
Bacteroidota
Nonlabens ponticola MJ115 [CP034549]
589653
589579
-
Met
CAT
-
¡û
>W141560706
JHXV01000025
Bacteroidota
Crocinitomix catalasitica ATCC 23190 [JHXV]
59599
59675
+
Met
CAT
[ENA]
¡û
>W1910785615
MQUC01000003
Bacteroidota
Nonlabens agnitus JCM 17109 [MQUC]
2583226
2583300
+
Met
CAT
[ENA]
¡û
>W1910785735
MQVW01000027
Bacteroidota
Nonlabens xylanidelens DSM 16809 [MQVW]
243563
243489
-
Met
CAT
[ENA]
¡û
>W1910932873
NIUC01000001
Bacteroidota
Algoriphagus formosus XAY3209 [NIUC]
1069944
1070018
+
Met
CAT
[ENA]
¡û
>W1810296280
PTJE01000001
Bacteroidota
Nonlabens xylanidelens DSM 16809 [PTJE]
607653
607579
-
Met
CAT
[ENA]
¡û
>W1810685945
QKZR01000001
Bacteroidota
Nonlabens dokdonensis DSM 17205 [QKZR]
1362449
1362375
-
Met
CAT
[ENA]
¡û
>C151090017
CP012040
Bacteroidota
Cyclobacterium amurskyense KCTC 12363 [CP012040]
4049851
4049927
+
Met
CAT
[Ensembl]
¡û
>SRA1051661
SRR035098.52722
454 Sequencing (SRP001819)
342
268
-
Met
CAT
[SRA]
>C11105724
CP002955
Bacteroidota
Cyclobacterium marinum DSM 745 [CP002955]
4090737
4090813
+
Met
CAT
[Ensembl]
¡û
>W1511387666
JSVA01000014
Bacteroidota
Roseivirga seohaensis D-25 [JSVA]
69313
69389
+
Met
CAT
[ENA]
¡û
>W1511564720
LADZ01000002
Bacteroidota
Flavobacteriales bacterium BRH_c54 [LADZ]
85846
85920
+
Met
CAT
[ENA]
¡û
>C161000286
AP014548
Bacteroidota
Nonlabens marinus S1-08 [AP014548]
826163
826239
+
Met
CAT
[Ensembl]
¡û
>C131001111
CP001397
Bacteroidota
Nonlabens dokdonensis DSW-6 [CP001397]
1582795
1582719
-
Met
CAT
[Ensembl]
¡û
>W1610584170
LBMJ01000001
Bacteroidota
Nonlabens sp. YIK11 [LBMJ]
573050
573126
+
Met
CAT
[ENA]
¡û
>W1610666107
LJXT01000158
Bacteroidota
Algoriphagus marincola HL-49 [LJXT]
7703
7629
-
Met
CAT
[ENA]
¡û
>W1610870266
LQZQ01000045
Bacteroidota
Roseivirga ehrenbergii [LQZQ]
415571
415495
-
Met
CAT
[ENA]
¡û
>W1610875113
LRDB01000004
Bacteroidota
Roseivirga echinicomitans [LRDB]
174403
174327
-
Met
CAT
[ENA]
¡û
>W1610888679
LRPB01000034
Bacteroidota
Roseivirga seohaensis [LRPB]
72574
72650
+
Met
CAT
[ENA]
¡û
>W1710582408
FQTW01000006
Bacteroidota
Psychroflexus salarius [FQTW]
166930
167006
+
Met
CAT
[ENA]
¡û
>W1710703318
LBMJ01000001
Bacteroidota
Nonlabens sp. YIK11 [LBMJ]
573050
573126
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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