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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.273895 (9 seq.)
>W1711629417
MPOX01000025
Bacteroidota
Proteiniphilum sp. EBM-41 [MPOX]
212855
212930
+
Pro
TGG
[ENA]
¡û
>WENV170684436
LFRM01039104
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
2059
2136
+
Pro
TGG
[ENA]
¡û
>WENV170718292
LSQX01069473
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
86
9
-
Pro
TGG
[ENA]
¡û
>WENV170721370
LSQX01187731
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
32554
32629
+
Pro
TGG
[ENA]
¡û
>WENV170724580
LSQX01310716
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
1604
1681
+
Pro
TGG
[ENA]
¡û
>WENV170726441
LSQX01380396
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
5607
5684
+
Pro
TGG
[ENA]
¡û
>C151102971
LN515532
Bacteroidota
Fermentimonas caenicola [LN515532]
1965728
1965653
-
Pro
TGG
[Ensembl]
¡û
>W2010273104
CABKUN020000001
Bacteroidota
Porphyromonadaceae bacterium [CABKUN]
212767
212842
+
Pro
TGG
[ENA]
¡û
>W1510562678
CTEJ01000001
Bacteroidota
Lascolabacillus massiliensis SIT8 [CTEJ]
212767
212842
+
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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